NO14G02580.1, NO14G02580.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02580.1
Unique Name	NO14G02580.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3131
Alignment location	chr14:769925..773853 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:769925..773853 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO14G02580.1 vs.
Match: EWM24551.1 (globin domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 152.1 bits (383), Expect = 2.700e-33
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = 0

Query:  147 MLVRLGKRHQALGVKPQQYSSMRRSILASLEELLGHEWNSEYSDAWASVFNFISHVMIKAAQEEGQRIAKGGKEEEAGNVIGRELPGVPGG--GGGGGGGSGCPFAAAARMPVNKVLSGLQLDDALKGNNVETDGHFLHQAVA 288
            ML+RLGKRH  LGV+PQQY SM+RSIL SLEELLG EWN +Y DAWASVF+FISHVMIKAA EE QR+A+ GK+E      GR   G  GG    G G G GCP  A A MPVNKVLSGLQL+     +    DGH+LH+  A
Sbjct:    3 MLIRLGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAAAEEAQRVAREGKQEGGK---GRGEGGEGGGEASHGEGRGKGCPITAPAHMPVNKVLSGLQLESI---HTSHPDGHYLHRTPA 139

The following BLAST results are available for this feature:

BLAST of NO14G02580.1 vs.

BLAST of NO14G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24551.1	2.700e-33	61.54	globin domain protein, partial [Nannochloropsis ga...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G02580	NO14G02580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02580.1	NO14G02580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02580.1.cds1	NO14G02580.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02580.1.cds2	NO14G02580.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02580.1.cds3	NO14G02580.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02580.1.cds4	NO14G02580.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G02580.1.cds5	NO14G02580.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:769925..773853+
coding sequence from alignment at chr14:769925..773853+

mRNA sequence

>NO14G02580.1 ID=NO14G02580.1|Name=NO14G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3131bp
TCCTCCCCCCCTCCCCCTCCATCTTTAGAACATACGTTGGTGATCCCACT
GGTATGACCTGCTAGTAACCCCACCGCGCCCTCCGTCCTCAAATCCCACA
ATTTTATCAACCCGTCGTCGGCTCCCGACAGCACGAGGGAGGGAGAATGG
ACAGGGTCAACAAAACACACGGTATTTACATCATCATAATGCGCTTGCTC
GATACGAGAAACAGCCTTGCGCTCCAACTGGATCAGGTGAAGGCATCCAT
CGTTTCCGCCCCCAATCACCTGGGCCCCATCAGCGGAGAAAGCCAGGGAA
AACAAACAGAAATTAGCGCTCCGATGAGGGGAGACACTTACCCGCTCATG
CAACTCGTGCTGTCCAAAGGTGTTGGTAAGGTGAAGATAGCGCGACCAAG
ACGAATAAGCAATCCATTTGGCGTCGGGGCTGAAAGCAGAACCGACAATA
GACCAGCCTATGTCTTGACAACGGATGCGTTTCTTCGGACGAATCACAGG
ATGGGCGGAGGACGAGGAGGAGGACGAGGAGGAGGAAATAGACGAGAAAA
GACCCGAGTACATACGTGGTGCGCTCCGACCGCCCGCCATGGGCAGGGAA
AGGCGATGTTGGTGCTGTGCTTGGGCATATAACAACTGGTCGAGGTCGTA
CAGGTTGATGGTGCCGTCTTGACAGGCCGTGAAGACCATTTGTCCATCCC
TGCTAAAGCTCGCACTGAAGAGGGCTGACTGAAAACCTCCCACGGCTCCC
GCTAGGGACGTGGGGTGGAGATTGACTCCGTTTAATGCGGCGCGCACGAA
GCGATGGTGAGGACCTAAATTACCGGCGCCGTGGGTCTCGCGGTAGAACA
AGTGGTTCATGTTGAACTTGCCGCTTGAAGGTAGGAAGGGTGGCGGGAGG
AGTGTGTACGCTTTGTCGTCCAGCATGGGTGGCGCGTCGCGAGGAGTGGG
ACACGGAGGGGAAGAAGGCGAGGAATTTATCGAGGAGGAGGAGAAGGAGG
AGGAGGAGGAAGAGGAGGCGATGGAGGAGGAAGAGGACGAGGAGGAAGAC
TCGGAGGAGTCGGAGTTAGATACGCTGGCAGAGTAAGGGTTGGCTGCTGC
CAAGCGGGCGCTACGCCTGGGCGGTGAAGGTGACGAGGAGTCGGGAGGTA
AAGAAGAGGACGACATATCTTGTGTACAGAATGTAAGCCTGTGCTTGTGT
TGTGAAATGCCAACTCAGCATGTTGACCTCCCCCACTATGTCCAATCTTA
GATATCGAGAAAGACTCCGGAGCTTGCCCTTGGCATCGGGTGACATCGGA
TAAGTTGAGGAGAGGAGACTATTGCCCTTGACAATGACATATCTAGCTCT
CACAAAGTTGCACGCATTATAGTCATCAGGTGCCCTCCTCTGAGTCTGCA
ATATCGGTCGCGGCAATAGCGATAACGTTGGCGAGTGGAAGATTACCGTG
ACCCTCACATCCTCTGCCTCACCTCCCCTGTCACACGACGGTCGCGCGCC
TCATGGCCATGCTGCTTTCGAAAAATAACCACACGCCCCATACGCACATG
CCCCAGCCGCGTCCTCCTACTTACAGTATATAGTACATCCTTCTTACCAT
TCACACACAGGGACCTGGAAGCTCCTCGTTGTCGGCCGTCTTGCTTGGGA
TATACACCGTTGTCGTCCTTGCCGGGCTGCCTGGTGATTTAGGTCCAACG
CGAAGTATCACCACTACCCCTAACTATCGCTCCACTGAATAGCAACAGGC
CTTTATTCCTCTTCGTTCCGTTTATTCCTCGTCTTGATCTCCCTCGTCCT
TCCACCTTTCAAAATGGTTGGCAGCAGGAGCAGTAATAGCAAGAGCAAGC
TGTACCTGGCAGTGGGCGGGCTGGCAGCACTGAGCTATTTTATGCATTGG
ATTTACACTCGGTCCGAGAAACGGACCTTGCGGCATGAGGCCCGAAATGC
GACTTTGCTCGAGCAGATGTCGGTGAGGGACTACGTTGCGTCTTACTTGG
AAGATCCCGCGATGAAGAGGCAGTTCATGCGGCAGGTGGAGCTCGTGCGA
GAGAGCTGGAACCGCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCATGT
GATGTACCAAAAGCTGCGTCAAGAGGACCCAAGCACCCAGGAAGTCTTCG
ACAAGCGACTGGACTGGAGCAGCCAAGAACGTATCTTTACCGTTATGATC
GGAAACCTAATTAGCCGTTTAGGCGACCCTTCAGAAGAGGCATTTTTGGG
GATGCTCGTTCGCCTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCCAC
AGCAGTACAGCAGCATGCGACGTTCGATCTTGGCCAGTTTGGAGGAACTG
TTGGGGCATGAATGGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTATT
TAATTTCATTTCGCACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCAGC
GAATCGCCAAGGGAGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGCGG
GAGCTACCGGGAGTGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGG
GTGTCCATTCGCGGCGGCAGCGCGGATGCCAGTAAATAAGGTATTGAGTG
GGTTGCAGCTTGACGATGCGTTGAAAGGCAACAACGTTGAGACGGACGGG
CATTTTTTACACCAGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGC
TGGCAGTAGCAGTAGTGGTAGAAGTAGTTGAAGCAGTAAATGTATTAGTT
AATTATTAATTGAAGCTATTTATTCATCCACTCATTGGTTTGTTTATTTG
CATACGTGTAAACATATATGTGTATGAAGACGAGAATTCACATATATAAT
GGGCGAAAGGAAAAGAGAACAAACAGGATCACGAGGAGGGTGAGAAAGCG
GTGAAAAAAATATTTTGAAATCGGGCTGATGATGCTTGGTGCTATGTAGG
GCAAGGAAGAAGAAGAAGGGATATCGCGTCCAGGTGCGGCTTAAGGTGGG
GATGCTGCCGGTGGTGCTGGTGCTGGTGCTCCCGCGGGCTGTCGGAGAGG
AAAAAGAGAATGAAGTAAAAAGAAAAGAAGAACAAATCGAAGAAGAAGAA
GAAGAAGAACAAAACGAAGAACAGGACCAAG

protein sequence of NO14G02580.1

>NO14G02580.1-protein ID=NO14G02580.1-protein|Name=NO14G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MVGSRSSNSKSKLYLAVGGLAALSYFMHWIYTRSEKRTLRHEARNATLLE
QMSVRDYVASYLEDPAMKRQFMRQVELVRESWNRLKPNRLELTAHVMYQK
LRQEDPSTQEVFDKRLDWSSQERIFTVMIGNLISRLGDPSEEAFLGMLVR
LGKRHQALGVKPQQYSSMRRSILASLEELLGHEWNSEYSDAWASVFNFIS
HVMIKAAQEEGQRIAKGGKEEEAGNVIGRELPGVPGGGGGGGGGSGCPFA
AAARMPVNKVLSGLQLDDALKGNNVETDGHFLHQAVASLEGGGGAAGSSS
SGRSS*

mRNA from alignment at chr14:769925..773853+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G02580.1 ID=NO14G02580.1|Name=NO14G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3929bp|location=Sequence derived from alignment at chr14:769925..773853+ (Nannochloropsis oceanica)
TCCTCCCCCCCTCCCCCTCCATCTTTAGAACATACGTTGGTGATCCCACT
GGTATGACCTGCTAGTAACCCCACCGCGCCCTCCGTCCTCAAATCCCACA
ATTTTATCAACCCGTCGTCGGCTCCCGACAGCACGAGGGAGGGAGAATGG
ACAGGGTCAACAAAACACACGGTATTTACATCATCATAATGCGCTTGCTC
GATACGAGAAACAGCCTTGCGCTCCAACTGGATCAGGTGAAGGCATCCAT
CGTTTCCGCCCCCAATCACCTGGGCCCCATCAGCGGAGAAAGCCAGGGAA
AACAAACAGAAATTAGCGCTCCGATGAGGGGAGACACTTACCCGCTCATG
CAACTCGTGCTGTCCAAAGGTGTTGGTAAGGTGAAGATAGCGCGACCAAG
ACGAATAAGCAATCCATTTGGCGTCGGGGCTGAAAGCAGAACCGACAATA
GACCAGCCTATGTCTTGACAACGGATGCGTTTCTTCGGACGAATCACAGG
ATGGGCGGAGGACGAGGAGGAGGACGAGGAGGAGGAAATAGACGAGAAAA
GACCCGAGTACATACGTGGTGCGCTCCGACCGCCCGCCATGGGCAGGGAA
AGGCGATGTTGGTGCTGTGCTTGGGCATATAACAACTGGTCGAGGTCGTA
CAGGTTGATGGTGCCGTCTTGACAGGCCGTGAAGACCATTTGTCCATCCC
TGCTAAAGCTCGCACTGAAGAGGGCTGACTGAAAACCTCCCACGGCTCCC
GCTAGGGACGTGGGGTGGAGATTGACTCCGTTTAATGCGGCGCGCACGAA
GCGATGGTGAGGACCTAAATTACCGGCGCCGTGGGTCTCGCGGTAGAACA
AGTGGTTCATGTTGAACTTGCCGCTTGAAGGTAGGAAGGGTGGCGGGAGG
AGTGTGTACGCTTTGTCGTCCAGCATGGGTGGCGCGTCGCGAGGAGTGGG
ACACGGAGGGGAAGAAGGCGAGGAATTTATCGAGGAGGAGGAGAAGGAGG
AGGAGGAGGAAGAGGAGGCGATGGAGGAGGAAGAGGACGAGGAGGAAGAC
TCGGAGGAGTCGGAGTTAGATACGCTGGCAGAGTAAGGGTTGGCTGCTGC
CAAGCGGGCGCTACGCCTGGGCGGTGAAGGTGACGAGGAGTCGGGAGGTA
AAGAAGAGGACGACATATCTTGTGTACAGAATGTAAGCCTGTGCTTGTGT
TGTGAAATGCCAACTCAGCATGTTGACCTCCCCCACTATGTCCAATCTTA
GATATCGAGAAAGACTCCGGAGCTTGCCCTTGGCATCGGGTGACATCGGA
TAAGTTGAGGAGAGGAGACTATTGCCCTTGACAATGACATATCTAGCTCT
CACAAAGTTGCACGCATTATAGTCATCAGGTGCCCTCCTCTGAGTCTGCA
ATATCGGTCGCGGCAATAGCGATAACGTTGGCGAGTGGAAGATTACCGTG
ACCCTCACATCCTCTGCCTCACCTCCCCTGTCACACGACGGTCGCGCGCC
TCATGGCCATGCTGCTTTCGAAAAATAACCACACGCCCCATACGCACATG
CCCCAGCCGCGTCCTCCTACTTACAGTATATAGTACATCCTTCTTACCAT
TCACACACAGGGACCTGGAAGCTCCTCGTTGTCGGCCGTCTTGCTTGGGA
TATACACCGTTGTCGTCCTTGCCGGGCTGCCTGGTGATTTAGGTCCAACG
CGAAGTATCACCACTACCCCTAACTATCGCTCCACTGAATAGCAACAGGC
CTTTATTCCTCTTCGTTCCGTTTATTCCTCGTCTTGATCTCCCTCGTCCT
TCCACCTTTCAAAATGGTTGGCAGCAGGAGCAGTAATAGCAAGAGCAAGC
TGTACCTGGCAGTGGGCGGGCTGGCAGCACTGAGCTATTTTATGCATGTA
CGTGGCCCCAATAATTATCCTCCCATCCTTCGTATTCCCACCCATGCCAT
TTCATTTCATGATGACCCACTGACCCCCTTCCTTCCCCCCTTCCTTCCCC
ACTTTCTCCCTCCATTCCCTCCCTCCATTCCACCAGTGGATTTACACTCG
GTCCGAGAAACGGACCTTGCGGCATGAGGCCCGAAATGCGACTTTGCTCG
AGCAGATGTCGGTGAGGGACTACGTTGCGTCTTACTTGGAAGATCCCGCG
ATGAAGAGGCAGTTCATGCGGCAGGTAGGCAAGGAGGGAGGGAGGGACGA
AGGGGGAAAGGAGGGATGAACGGTGGGAGGCATTTAGCTACAGCGTCAAT
CGCCGTTGTTGTAAGTGCCCTTTATCGGCCTGTCACAGGATGAGGAAAGT
TTTGCCTGAGAGAGGAACAGGGGAGGCAGGGAGGGCATGATGCCAGGTAT
ATATAGACAAACATACATATTTGCCACACACTTATTATTCGGTAATCTTC
TGTGCACGGCGGCATATTTGTGATTGATAGTATCACCCCTTTCTCTTTCT
CATTTCCACCCACTCTCTCTCGTGGACCAAACAGGTGGAGCTCGTGCGAG
AGAGCTGGAACCGCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCATGTG
ATGTACCAAAAGCTGCGTCAAGAGGACCCAAGCACCCAGGAAGTGTAAGT
CATATACATATGATATACATGTTTGTATAAATGTACACGTATATATACAT
ATTATGTATGAAAATATTCATATGGAATTACATACACACATTCGGTTTTT
GAGTTTGAATATTCGTTGCAGCCGGTCATGTGGAGGTGTTGATTATTTTT
CTCCATCGGTTTTCCCCCTCCACTCCCTTCTTCAGCTTCGACAAGCGACT
GGACTGGAGCAGCCAAGAACGTATCTTTACCGTTATGATCGGAAACCTAA
TTAGCCGTTTAGGCGACCCTTCAGAAGAGGCATTTTTGGGTACGGAGGGA
GGGAGGGAGGGAGGGAGGGGGAGGGGGGGGAGGAAGAAAATTGTGACAGA
CGATGTCAGGCATATTGAAATGCTGGTACTGTGACTGCTTCCAGTCACGC
GTTACAATCTTCCTTGCTCACTCCTTCCCCTCCATTCCCTCTTGCAGGGA
TGCTCGTTCGCCTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCCACAG
CAGTACAGCAGCATGCGACGTTCGATCTTGGCCAGTTTGGAGGAACTGTT
GGGGCATGAATGGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTATTTA
ATTTCATTTCGCACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGA
ATCGCCAAGGGAGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGCGGGA
GCTACCGGGAGTGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGGGT
GTCCATTCGCGGCGGCAGCGCGGATGCCAGTAAATAAGGTATTGAGTGGG
TTGCAGCTTGACGATGCGTTGAAAGGCAACAACGTTGAGACGGACGGGCA
TTTTTTACACCAGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGCTG
GCAGTAGCAGTAGTGGTAGAAGTAGTTGAAGCAGTAAATGTATTAGTTAA
TTATTAATTGAAGCTATTTATTCATCCACTCATTGGTTTGTTTATTTGCA
TACGTGTAAACATATATGTGTATGAAGACGAGAATTCACATATATAATGG
GCGAAAGGAAAAGAGAACAAACAGGATCACGAGGAGGGTGAGAAAGCGGT
GAAAAAAATATTTTGAAATCGGGCTGATGATGCTTGGTGCTATGTAGGGC
AAGGAAGAAGAAGAAGGGATATCGCGTCCAGGTGCGGCTTAAGGTGGGGA
TGCTGCCGGTGGTGCTGGTGCTGGTGCTCCCGCGGGCTGTCGGAGAGGAA
AAAGAGAATGAAGTAAAAAGAAAAGAAGAACAAATCGAAGAAGAAGAAGA
AGAAGAACAAAACGAAGAACAGGACCAAG

Coding sequence (CDS) from alignment at chr14:769925..773853+

>NO14G02580.1 ID=NO14G02580.1|Name=NO14G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr14:769925..773853+ (Nannochloropsis oceanica)
ATGGTTGGCAGCAGGAGCAGTAATAGCAAGAGCAAGCTGTACCTGGCAGT
GGGCGGGCTGGCAGCACTGAGCTATTTTATGCATTGGATTTACACTCGGT
CCGAGAAACGGACCTTGCGGCATGAGGCCCGAAATGCGACTTTGCTCGAG
CAGATGTCGGTGAGGGACTACGTTGCGTCTTACTTGGAAGATCCCGCGAT
GAAGAGGCAGTTCATGCGGCAGGTGGAGCTCGTGCGAGAGAGCTGGAACC
GCCTCAAGCCCAACCGGCTCGAGCTGACGGCCCATGTGATGTACCAAAAG
CTGCGTCAAGAGGACCCAAGCACCCAGGAAGTCTTCGACAAGCGACTGGA
CTGGAGCAGCCAAGAACGTATCTTTACCGTTATGATCGGAAACCTAATTA
GCCGTTTAGGCGACCCTTCAGAAGAGGCATTTTTGGGGATGCTCGTTCGC
CTGGGCAAGCGGCACCAGGCATTGGGCGTGAAGCCACAGCAGTACAGCAG
CATGCGACGTTCGATCTTGGCCAGTTTGGAGGAACTGTTGGGGCATGAAT
GGAACAGTGAGTACAGCGATGCGTGGGCGAGTGTATTTAATTTCATTTCG
CACGTGATGATTAAGGCGGCGCAGGAGGAGGGGCAGCGAATCGCCAAGGG
AGGGAAGGAGGAAGAGGCAGGGAATGTTATTGGGCGGGAGCTACCGGGAG
TGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGTTCAGGGTGTCCATTCGCG
GCGGCAGCGCGGATGCCAGTAAATAAGGTATTGAGTGGGTTGCAGCTTGA
CGATGCGTTGAAAGGCAACAACGTTGAGACGGACGGGCATTTTTTACACC
AGGCGGTGGCGAGTTTGGAGGGAGGGGGAGGGGCTGCTGGCAGTAGCAGT
AGTGGTAGAAGTAGTTGA

Synonyms

Publications