NO14G02540.1, NO14G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02540.1
Unique NameNO14G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1383
Alignment locationchr14:765395..766777 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:765395..766777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02540.1 vs.
Match: XP_002186312.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; ACI65782.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 179.1 bits (453), Expect = 3.100e-41
Identity = 117/302 (38.74%), Postives = 162/302 (53.64%), Query Frame = 0 
Query:   62 PDMFPKLLGPISPDAFLREHYHTKSPLLIK------GHNFVPFLDEEMEGGDILGLLESSPSENISVWTVTGPAQKINTARVQDAGSAAALYVAGHSVYCRAPEAVESVLVESAIGALGLGCRMSQP---GVKSVIEGEVEMFLSHAGHHTPFHFDFQENVTLQLKGRKRWRLKKG-VKNPVRGCTPHYRQVDGVLDAAGEEQVKVHRLRDSHFVFQGPKED-----EEEEMVVMVEEGDVFYHPAGVWHAVECLEESISINVSLDGMTYADLFSGALKQVLWGEEDGR--FTAMVATGDGS 347
            PD+   LL P++ D FL  ++  KS + +           +  L   +   D   +L+ + S+ + VW        I +  V D  +A AL+ AGH+ YCRAP ++E +LV + +   GLGC    P    + S+  GEVE+F   AGH   +H DFQEN T+QL G KRWRL+KG V +P+RGCTPHYR    V     E Q+K  R+ D +F F  PK+D     E EE  V++  GDV Y PAG+WH V   E  +S+N+SL    YA L   AL+ VL  +   R   T  V+T +GS
Sbjct:   40 PDLLHDLLDPMTNDEFLNRNFR-KSAVHVTVTQEKDREQRIAKLRARLFDLDSESILQHTASDTVFVWLRNTTTGLIQSIAVADLETALALHRAGHATYCRAPPSLERLLVGALLENTGLGCGQYDPTGSSLTSLGRGEVEVFQGTAGHVPSWHTDFQENFTVQLSGVKRWRLQKGSVTHPLRGCTPHYRSPSSV-----EPQLKAARMIDKNFQFAHPKKDVNAVGEVEE--VVLRPGDVLYFPAGMWHQVVTEEPGVSLNISLMATNYAALTCQALQHVLLQKSSWRECVTRSVSTSNGS 333
The following BLAST results are available for this feature:
BLAST of NO14G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002186312.13.100e-4138.74predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02540NO14G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02540.1NO14G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02540.1.cds1NO14G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02540.1 ID=NO14G02540.1|Name=NO14G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
ATGGCGCGCGAAGCCCCGGTCACTAAGACCAAGAAACAGCGTATCAACAC
GAAACGTTCCGCCAACGATATAAGGGCGACTTTTTCCACATCCTCAGACG
AAAGCTCTGCTGGCATTAAAGCCAAAAAGAGTGTTCGCTCCCTCTCGGCC
AGCAAGGAACATGGGAGCCACCTGCACCTATCTCCCGACATGTTTCCCAA
GCTGCTCGGCCCTATTTCCCCCGATGCCTTTCTCCGAGAGCATTACCACA
CCAAATCCCCCCTTCTTATCAAAGGCCACAATTTTGTTCCCTTTCTTGAT
GAGGAGATGGAGGGTGGGGATATTTTAGGGCTCCTCGAATCGAGCCCAAG
TGAGAATATCAGCGTTTGGACAGTAACTGGCCCTGCGCAGAAGATCAACA
CTGCACGCGTCCAAGATGCGGGAAGCGCTGCGGCATTGTATGTAGCAGGT
CATAGTGTGTATTGTCGGGCACCAGAGGCGGTGGAGAGCGTGTTGGTGGA
GTCGGCCATTGGGGCTTTAGGGTTAGGGTGTCGAATGAGCCAGCCTGGGG
TTAAGTCAGTGATTGAAGGAGAGGTAGAGATGTTCTTGAGTCATGCGGGA
CACCATACCCCTTTCCATTTCGATTTCCAGGAAAATGTGACGTTGCAATT
GAAGGGACGGAAGAGGTGGCGGTTGAAAAAAGGGGTTAAGAATCCGGTGA
GAGGATGTACGCCTCACTACCGGCAGGTGGATGGAGTGTTGGATGCGGCG
GGGGAGGAACAAGTGAAGGTACATCGATTAAGGGATTCACATTTTGTGTT
TCAAGGGCCTAAAGAGGATGAGGAGGAGGAGATGGTGGTGATGGTGGAGG
AGGGGGACGTGTTCTACCACCCGGCAGGTGTGTGGCATGCGGTGGAGTGC
TTGGAGGAAAGTATTTCAATTAACGTTAGCCTGGACGGGATGACCTACGC
GGATTTATTCTCGGGGGCCCTTAAGCAAGTGCTATGGGGGGAGGAGGATG
GTAGATTTACGGCAATGGTGGCCACAGGTGATGGGAGTGCGAAGGATGGA
GGGAAGGAAGGTGGGAAAGATGATAGTAGGAGACAGAGGAAGCAGAAGCA
ACAGAAACGGCAAGAGGATGTAACGGAGAAGCCCCAGGCGAGGATGAGAA
GGTTGTTGCTGGAGGCGTCAGAAAGATTCAAGGTGCTGGCCGAAAGGCCC
GAGGCGTTATTGCCCCCGTGTGTTTGGTGGAATTCTGGTTTGCCGCCAAT
GAAGGATGCTGCTGCTGCTCCTTACGAGAAGGGGGAGGAGGCGGAGGAGG
GAGAGGGGGACGAGGGGGGGATGGGGAAGAGGAGGAGGAAGGTGATGATG
ACTTTCACTGCAAGGATTTCGCTGTGCCTGTAG
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protein sequence of NO14G02540.1

>NO14G02540.1-protein ID=NO14G02540.1-protein|Name=NO14G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MAREAPVTKTKKQRINTKRSANDIRATFSTSSDESSAGIKAKKSVRSLSA
SKEHGSHLHLSPDMFPKLLGPISPDAFLREHYHTKSPLLIKGHNFVPFLD
EEMEGGDILGLLESSPSENISVWTVTGPAQKINTARVQDAGSAAALYVAG
HSVYCRAPEAVESVLVESAIGALGLGCRMSQPGVKSVIEGEVEMFLSHAG
HHTPFHFDFQENVTLQLKGRKRWRLKKGVKNPVRGCTPHYRQVDGVLDAA
GEEQVKVHRLRDSHFVFQGPKEDEEEEMVVMVEEGDVFYHPAGVWHAVEC
LEESISINVSLDGMTYADLFSGALKQVLWGEEDGRFTAMVATGDGSAKDG
GKEGGKDDSRRQRKQKQQKRQEDVTEKPQARMRRLLLEASERFKVLAERP
EALLPPCVWWNSGLPPMKDAAAAPYEKGEEAEEGEGDEGGMGKRRRKVMM
TFTARISLCL*
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mRNA from alignment at chr14:765395..766777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02540.1 ID=NO14G02540.1|Name=NO14G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp|location=Sequence derived from alignment at chr14:765395..766777- (Nannochloropsis oceanica)
ATGGCGCGCGAAGCCCCGGTCACTAAGACCAAGAAACAGCGTATCAACAC
GAAACGTTCCGCCAACGATATAAGGGCGACTTTTTCCACATCCTCAGACG
AAAGCTCTGCTGGCATTAAAGCCAAAAAGAGTGTTCGCTCCCTCTCGGCC
AGCAAGGAACATGGGAGCCACCTGCACCTATCTCCCGACATGTTTCCCAA
GCTGCTCGGCCCTATTTCCCCCGATGCCTTTCTCCGAGAGCATTACCACA
CCAAATCCCCCCTTCTTATCAAAGGCCACAATTTTGTTCCCTTTCTTGAT
GAGGAGATGGAGGGTGGGGATATTTTAGGGCTCCTCGAATCGAGCCCAAG
TGAGAATATCAGCGTTTGGACAGTAACTGGCCCTGCGCAGAAGATCAACA
CTGCACGCGTCCAAGATGCGGGAAGCGCTGCGGCATTGTATGTAGCAGGT
CATAGTGTGTATTGTCGGGCACCAGAGGCGGTGGAGAGCGTGTTGGTGGA
GTCGGCCATTGGGGCTTTAGGGTTAGGGTGTCGAATGAGCCAGCCTGGGG
TTAAGTCAGTGATTGAAGGAGAGGTAGAGATGTTCTTGAGTCATGCGGGA
CACCATACCCCTTTCCATTTCGATTTCCAGGAAAATGTGACGTTGCAATT
GAAGGGACGGAAGAGGTGGCGGTTGAAAAAAGGGGTTAAGAATCCGGTGA
GAGGATGTACGCCTCACTACCGGCAGGTGGATGGAGTGTTGGATGCGGCG
GGGGAGGAACAAGTGAAGGTACATCGATTAAGGGATTCACATTTTGTGTT
TCAAGGGCCTAAAGAGGATGAGGAGGAGGAGATGGTGGTGATGGTGGAGG
AGGGGGACGTGTTCTACCACCCGGCAGGTGTGTGGCATGCGGTGGAGTGC
TTGGAGGAAAGTATTTCAATTAACGTTAGCCTGGACGGGATGACCTACGC
GGATTTATTCTCGGGGGCCCTTAAGCAAGTGCTATGGGGGGAGGAGGATG
GTAGATTTACGGCAATGGTGGCCACAGGTGATGGGAGTGCGAAGGATGGA
GGGAAGGAAGGTGGGAAAGATGATAGTAGGAGACAGAGGAAGCAGAAGCA
ACAGAAACGGCAAGAGGATGTAACGGAGAAGCCCCAGGCGAGGATGAGAA
GGTTGTTGCTGGAGGCGTCAGAAAGATTCAAGGTGCTGGCCGAAAGGCCC
GAGGCGTTATTGCCCCCGTGTGTTTGGTGGAATTCTGGTTTGCCGCCAAT
GAAGGATGCTGCTGCTGCTCCTTACGAGAAGGGGGAGGAGGCGGAGGAGG
GAGAGGGGGACGAGGGGGGGATGGGGAAGAGGAGGAGGAAGGTGATGATG
ACTTTCACTGCAAGGATTTCGCTGTGCCTGTAG
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Coding sequence (CDS) from alignment at chr14:765395..766777-

>NO14G02540.1 ID=NO14G02540.1|Name=NO14G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr14:765395..766777- (Nannochloropsis oceanica)
ATGGCGCGCGAAGCCCCGGTCACTAAGACCAAGAAACAGCGTATCAACAC
GAAACGTTCCGCCAACGATATAAGGGCGACTTTTTCCACATCCTCAGACG
AAAGCTCTGCTGGCATTAAAGCCAAAAAGAGTGTTCGCTCCCTCTCGGCC
AGCAAGGAACATGGGAGCCACCTGCACCTATCTCCCGACATGTTTCCCAA
GCTGCTCGGCCCTATTTCCCCCGATGCCTTTCTCCGAGAGCATTACCACA
CCAAATCCCCCCTTCTTATCAAAGGCCACAATTTTGTTCCCTTTCTTGAT
GAGGAGATGGAGGGTGGGGATATTTTAGGGCTCCTCGAATCGAGCCCAAG
TGAGAATATCAGCGTTTGGACAGTAACTGGCCCTGCGCAGAAGATCAACA
CTGCACGCGTCCAAGATGCGGGAAGCGCTGCGGCATTGTATGTAGCAGGT
CATAGTGTGTATTGTCGGGCACCAGAGGCGGTGGAGAGCGTGTTGGTGGA
GTCGGCCATTGGGGCTTTAGGGTTAGGGTGTCGAATGAGCCAGCCTGGGG
TTAAGTCAGTGATTGAAGGAGAGGTAGAGATGTTCTTGAGTCATGCGGGA
CACCATACCCCTTTCCATTTCGATTTCCAGGAAAATGTGACGTTGCAATT
GAAGGGACGGAAGAGGTGGCGGTTGAAAAAAGGGGTTAAGAATCCGGTGA
GAGGATGTACGCCTCACTACCGGCAGGTGGATGGAGTGTTGGATGCGGCG
GGGGAGGAACAAGTGAAGGTACATCGATTAAGGGATTCACATTTTGTGTT
TCAAGGGCCTAAAGAGGATGAGGAGGAGGAGATGGTGGTGATGGTGGAGG
AGGGGGACGTGTTCTACCACCCGGCAGGTGTGTGGCATGCGGTGGAGTGC
TTGGAGGAAAGTATTTCAATTAACGTTAGCCTGGACGGGATGACCTACGC
GGATTTATTCTCGGGGGCCCTTAAGCAAGTGCTATGGGGGGAGGAGGATG
GTAGATTTACGGCAATGGTGGCCACAGGTGATGGGAGTGCGAAGGATGGA
GGGAAGGAAGGTGGGAAAGATGATAGTAGGAGACAGAGGAAGCAGAAGCA
ACAGAAACGGCAAGAGGATGTAACGGAGAAGCCCCAGGCGAGGATGAGAA
GGTTGTTGCTGGAGGCGTCAGAAAGATTCAAGGTGCTGGCCGAAAGGCCC
GAGGCGTTATTGCCCCCGTGTGTTTGGTGGAATTCTGGTTTGCCGCCAAT
GAAGGATGCTGCTGCTGCTCCTTACGAGAAGGGGGAGGAGGCGGAGGAGG
GAGAGGGGGACGAGGGGGGGATGGGGAAGAGGAGGAGGAAGGTGATGATG
ACTTTCACTGCAAGGATTTCGCTGTGCCTGTAG
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Synonyms
Publications