NO14G02470.1, NO14G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02470.1
Unique NameNO14G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr14:738812..740690 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:738812..740690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02470.1 vs.
Match: EWM24562.1 (delta-24-sterol methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 606.7 bits (1563), Expect = 5.200e-170
Identity = 299/405 (73.83%), Postives = 335/405 (82.72%), Query Frame = 0 
Query:    1 MLQQINKTLEPLLGEHNVAAAVTLSVIALTIVVFRVRRP-----------CSFDVMNIMKNSDFEAHKAKDVQTSVDQYATLFTGARTKIGSISSAGSIESRQQNYKTLVGNFYDLATDFYEYGWGQSFHFAPRWKGEAFRESIKRAEYHLSSRLGLKPGMRVLDVGCGVGGPMRNIAIFSGAKIDGISINEYQVKIGNKYNEQHGLADACKSHQGDFQNLSDQWEEASFDAAFAVEATCHSPDKTKCFSEVLKILKPGGLFANYEWIVTDKYSPSNPTHTRIKEGIEVGNGLPTLATAGEVLDAVRAAGFEVVDAYDANAGVHSPNQIPWYDTLTGKFTLGGFRMTWLGRVITHLFVSVLELVRIAPRGTSKISSILNATAIDLVEGGKREIFTPSFFFVARKP 395
            ML+ IN+  +P + EH+VA AVTLSVI LT+VV RVRR             + DV+ IMKNSDFEAHK KDV +SV +YA+LFTGAR  +G IS+  SI++RQ NY+ LV NFYDL TDFYEYGWGQSFHF PRW+GE+F ESIKRAEYHL SRLGLKPGMRVLD+GCGVGGPMRN+AIFSGAKIDGI+INEYQV IGNKYN Q GLAD C++ QGDFQNL   W   +FDAAFAVEATCHSPDK +CFSE  ++LKPGGLF NYEWIVTDK+  SNP HTRIKEGIEVGNGLPTLATA +VL AVRAAGFEV+DAYDANA VHSP+QIPWY+ LTGK +  GFRMTWLGR++TH FV+VLE  RIAP GT KIS ILNATAIDLVEGGK EIFTPSFFFVARKP
Sbjct:   38 MLESINEFFKPFVAEHSVAVAVTLSVIGLTVVVLRVRRVNLRRDGMDYKGTAADVLKIMKNSDFEAHKDKDVHSSVSEYASLFTGARASVGRISTDASIKTRQANYQKLVTNFYDLVTDFYEYGWGQSFHFGPRWQGESFVESIKRAEYHLCSRLGLKPGMRVLDMGCGVGGPMRNMAIFSGAKIDGITINEYQVNIGNKYNAQRGLADQCQARQGDFQNLP--WPADTFDAAFAVEATCHSPDKRRCFSEAFRVLKPGGLFGNYEWIVTDKFDASNPEHTRIKEGIEVGNGLPTLATAEQVLAAVRAAGFEVLDAYDANADVHSPHQIPWYEPLTGKLSWSGFRMTWLGRIMTHAFVTVLEAARIAPTGTGKISGILNATAIDLVEGGKAEIFTPSFFFVARKP 440
The following BLAST results are available for this feature:
BLAST of NO14G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24562.15.200e-17073.83delta-24-sterol methyltransferase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02470NO14G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02470.1NO14G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02470.1.cds1NO14G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02470.1.cds2NO14G02470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02470.1.cds3NO14G02470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02470.1.cds4NO14G02470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02470.1.cds5NO14G02470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02470.1 ID=NO14G02470.1|Name=NO14G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTTGGGCGAGCACAA
TGTTGCGGCAGCGGTGACGCTGAGTGTAATCGCCTTGACCATTGTCGTTT
TCCGCGTTCGACGACCATGCTCCTTCGACGTGATGAACATCATGAAGAAC
AGCGACTTCGAGGCGCATAAAGCCAAGGACGTGCAAACCTCAGTGGATCA
GTACGCTACCCTTTTCACCGGCGCCCGGACCAAAATCGGCTCCATCTCCA
GCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACAAAACATTGGTGGGA
AACTTCTACGATCTAGCCACCGACTTTTACGAGTACGGCTGGGGTCAGTC
CTTTCACTTTGCTCCTCGTTGGAAGGGAGAAGCGTTCAGAGAGTCAATCA
AGCGGGCTGAATATCATCTAAGCTCACGCTTAGGGTTGAAGCCAGGCATG
CGCGTGTTGGATGTCGGGTGTGGAGTAGGTGGTCCAATGAGAAACATAGC
CATCTTCTCAGGTGCGAAAATCGATGGGATCTCGATCAATGAGTACCAGG
TGAAGATAGGCAACAAGTACAACGAACAACATGGCCTCGCGGACGCCTGC
AAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGAAGC
TTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCGACA
AGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGCCTG
TTCGCGAATTATGAGTGGATCGTAACGGATAAGTACTCCCCATCCAACCC
CACGCACACACGCATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGCCCA
CCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGCTTC
GAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTGCATTCTCCGAATCA
GATTCCCTGGTACGACACATTGACGGGAAAATTTACCTTGGGTGGTTTCA
GGATGACCTGGCTGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTGCTG
GAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCATTTT
GAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTTTTA
CACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGTAG
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protein sequence of NO14G02470.1

>NO14G02470.1-protein ID=NO14G02470.1-protein|Name=NO14G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MLQQINKTLEPLLGEHNVAAAVTLSVIALTIVVFRVRRPCSFDVMNIMKN
SDFEAHKAKDVQTSVDQYATLFTGARTKIGSISSAGSIESRQQNYKTLVG
NFYDLATDFYEYGWGQSFHFAPRWKGEAFRESIKRAEYHLSSRLGLKPGM
RVLDVGCGVGGPMRNIAIFSGAKIDGISINEYQVKIGNKYNEQHGLADAC
KSHQGDFQNLSDQWEEASFDAAFAVEATCHSPDKTKCFSEVLKILKPGGL
FANYEWIVTDKYSPSNPTHTRIKEGIEVGNGLPTLATAGEVLDAVRAAGF
EVVDAYDANAGVHSPNQIPWYDTLTGKFTLGGFRMTWLGRVITHLFVSVL
ELVRIAPRGTSKISSILNATAIDLVEGGKREIFTPSFFFVARKPQ*
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mRNA from alignment at chr14:738812..740690+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02470.1 ID=NO14G02470.1|Name=NO14G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr14:738812..740690+ (Nannochloropsis oceanica)
ATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTTGGGCGAGCACAA
TGTTGCGGCAGCGGTACGTGCGTGTCATCTTACCTGATCTCTACATTCAC
AGTTTCTCTGGTTCCTGCCTGATCAGTGCACCTGAGGGATTCATGTGCAG
CGTTTCTTTTGTGTGATACCTTGAACATTTTTTTTGGTGCCGGTACATGC
TTGTGCTGATGGCCACGAGCTCTCACTGGAGTTGTTGTTCGGATGGGAGC
TTGCGCTTGTGTATATGCATGTCTCCATGGTATGTGTTCTTCCCTGTGTG
CCTTCCCCACTTACGTGTCTACTTCTCAATTTTTTTTTGTAATAGGTGAC
GCTGAGTGTAATCGCCTTGACCATTGTCGTTTTCCGCGTTCGACGACCAT
GCTCCTTCGACGTGATGAACATCATGAAGAACAGCGACTTCGAGGCGCAT
AAAGCCAAGGTAGGTGTCGGGTTGGGAGGACGAGAGGACGGGAGGCGTTG
AACAATGGGGTGTTAAGCTAGGGGACAAGCCATACTTATGTGACATGAAA
GCTGCCTTTCGCAAGCGTTTGACCTCTCCATGTTTCCATGGGATAAGAAC
AACCTTTTCATTATATCTATTTCTCCTCTTCTTCCATCAGGACGTGCAAA
CCTCAGTGGATCAGTACGCTACCCTTTTCACCGGCGCCCGGACCAAAATC
GGCTCCATCTCCAGCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACAA
AACATTGGTGGGAAACTTCTACGATCTAGCCACCGACTTTTACGAGTACG
GCTGGGGTCAGGTACGGAGGGAGTGAGTGAGGGAGGGATGGAGGGATGGA
GGGAATGAGAAGTATATCGCTTGCTAACTGTCCCCTTCCTCCCTCTCTTC
CCCCCTTCGTCTGGGCAGTCCTTTCACTTTGCTCCTCGTTGGAAGGGAGA
AGCGTTCAGAGAGTCAATCAAGCGGGCTGAATATCATCTAAGCTCACGCT
TAGGGTTGAAGCCAGGCATGCGCGTGTTGGATGTCGGGTGTGGAGTAGGT
GGTCCAATGAGAAACATAGCCATCTTCTCAGGTGCGAAAATCGATGGGAT
CTCGATCAATGAGTACCAGGTAAGGCTTAAGAGAAAGATGGAGGAGGGGA
GGGAGGGAGGGAGGGGAGCGGAGGAAGAGAGGGCCACCCTCCTTCTCCTT
GATTTCTCCCGCCCACCCCCCCTCCTCCCCTACTCCCCAGGTGAAGATAG
GCAACAAGTACAACGAACAACATGGCCTCGCGGACGCCTGCAAGTCCCAT
CAAGGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGAAGCTTCGTTCGA
TGCCGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCGACAAGACCAAGT
GCTTTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGCCTGTTCGCGAAT
TATGAGTGGATCGTAACGGATAAGTACTCCCCATCCAACCCCACGCACAC
ACGCATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGCCCACCCTGGCAA
CGGCCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGCTTCGAGGTCGTT
GACGCGTACGATGCGAATGCAGGCGTGCATTCTCCGAATCAGATTCCCTG
GTACGACACATTGACGGGAAAATTTACCTTGGGTGGTTTCAGGATGACCT
GGCTGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTGCTGGAGCTGGTG
CGGATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCATTTTGAATGCAAC
GGCGATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTTTTACACCGAGTT
TCTTTTTTGTGGCAAGAAAGCCGCAGTAG
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Coding sequence (CDS) from alignment at chr14:738812..740690+

>NO14G02470.1 ID=NO14G02470.1|Name=NO14G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr14:738812..740690+ (Nannochloropsis oceanica)
ATGCTGCAGCAAATCAACAAGACTTTGGAGCCACTCTTGGGCGAGCACAA
TGTTGCGGCAGCGGTGACGCTGAGTGTAATCGCCTTGACCATTGTCGTTT
TCCGCGTTCGACGACCATGCTCCTTCGACGTGATGAACATCATGAAGAAC
AGCGACTTCGAGGCGCATAAAGCCAAGGACGTGCAAACCTCAGTGGATCA
GTACGCTACCCTTTTCACCGGCGCCCGGACCAAAATCGGCTCCATCTCCA
GCGCCGGCAGTATCGAGTCCCGGCAACAAAACTACAAAACATTGGTGGGA
AACTTCTACGATCTAGCCACCGACTTTTACGAGTACGGCTGGGGTCAGTC
CTTTCACTTTGCTCCTCGTTGGAAGGGAGAAGCGTTCAGAGAGTCAATCA
AGCGGGCTGAATATCATCTAAGCTCACGCTTAGGGTTGAAGCCAGGCATG
CGCGTGTTGGATGTCGGGTGTGGAGTAGGTGGTCCAATGAGAAACATAGC
CATCTTCTCAGGTGCGAAAATCGATGGGATCTCGATCAATGAGTACCAGG
TGAAGATAGGCAACAAGTACAACGAACAACATGGCCTCGCGGACGCCTGC
AAGTCCCATCAAGGCGATTTTCAGAACCTCTCCGATCAGTGGGAGGAAGC
TTCGTTCGATGCCGCTTTTGCCGTGGAAGCCACTTGCCACTCCCCCGACA
AGACCAAGTGCTTTTCCGAAGTCCTGAAAATTCTCAAACCTGGCGGCCTG
TTCGCGAATTATGAGTGGATCGTAACGGATAAGTACTCCCCATCCAACCC
CACGCACACACGCATCAAGGAAGGGATTGAGGTTGGCAACGGGCTGCCCA
CCCTGGCAACGGCCGGGGAAGTGCTCGACGCAGTCCGTGCAGCGGGCTTC
GAGGTCGTTGACGCGTACGATGCGAATGCAGGCGTGCATTCTCCGAATCA
GATTCCCTGGTACGACACATTGACGGGAAAATTTACCTTGGGTGGTTTCA
GGATGACCTGGCTGGGGAGGGTAATCACGCACCTGTTTGTCTCTGTGCTG
GAGCTGGTGCGGATTGCGCCGAGGGGGACGTCGAAGATCAGTTCCATTTT
GAATGCAACGGCGATCGACTTGGTAGAGGGGGGAAAGCGGGAGATTTTTA
CACCGAGTTTCTTTTTTGTGGCAAGAAAGCCGCAGTAG
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Synonyms
Publications