NO14G02280.1, NO14G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02280.1
Unique NameNO14G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr14:686246..687838 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:686246..687838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02280.1 vs.
Match: EWM24580.1 (40s ribosomal protein s2 [Nannochloropsis gaditana])

HSP 1 Score: 537.3 bits (1383), Expect = 3.600e-149
Identity = 281/309 (90.94%), Postives = 288/309 (93.20%), Query Frame = 0 
Query:   54 PLFSLPPPSTHTNRTQLFLPLPQHHPSMEGGGDVGRGRGGFGRGRGDRGGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEFQIIDKFLAAPPPGVLAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGQAPYQEHTDFLASGKVEYARRKEVE 363
            P   LP   +  +    FL   Q   SMEGGGDVGRGRGGFGRGRGDR GDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKE+QIIDKFLAAPPPGV+APTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALG+ PYQEHTDFL+SGKVE+ RRKEVE
Sbjct:   21 PFLYLPSLPSQLSTGSFFLQAIQ---SMEGGGDVGRGRGGFGRGRGDR-GDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE 325
The following BLAST results are available for this feature:
BLAST of NO14G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24580.13.600e-14990.9440s ribosomal protein s2 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02280NO14G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02280.1NO14G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02280.1.cds1NO14G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02280.1 ID=NO14G02280.1|Name=NO14G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATCTCCTTCTGTCATGCCCTCCGCCCTTTTTCTCTGTTGCCTCTCTTGAA
CCGCACTTGATGCCCTTTCTGACCGCTCACTAAGCAAAGGTGTGTGACTG
AATAACACATGTGCAGGCACATTTGCTGGTGCGGTGGTTGAGGCGCGGAG
GGAGAGCGGATGGTGGGGAGGCTAGCTTCTGGCTTCGCCGACACCCGCCC
TCCCTCCAATGCCTTTGGGCGTCAGGCCATCACCACACTTACGCAACGCG
GGTGGCTTCAGCATGCAGACCATCATGATCATCATGTGTACAAACTGTGG
TTGCCTGGCATTCTCTTGGCTTCTATGCAATCAACGCAACTCACCCTCAC
TCATGCCTCCTCCCCCTCCCCTCTTCTCCCTCCCTCCGCCATCAACCCAC
ACAAACCGCACACAGTTGTTTCTTCCCCTACCCCAACATCATCCAAGCAT
GGAGGGCGGCGGCGACGTTGGACGCGGACGCGGCGGCTTCGGCCGAGGAC
GTGGAGACAGAGGAGGCGACCGTGGTCGTGGCCGTGGCCGCGGACGCGGG
CGTGGTGGGGACAAAGACGAGAAGGAGGGCTGGACCCCCGTGACCAAACT
CGGTCGCCTGGTGAAGGAGGGCAAGATCAAGAGCTTGGAGGAGATCTTCC
TTTACTCTCTGCCTGTCAAGGAGTTTCAGATCATCGACAAGTTCCTCGCT
GCCCCTCCCCCCGGGGTCCTCGCCCCTACCTCGGGCCTTCGCGACGAGGT
CATGAAGATCATGCCCGTGCAAAAGCAGACGTCCGCCGGGCAGCGCACGC
GTTTTAAGGCCTTCGTGGCCATTGGTGACTACGACGGACACGTCGGCCTC
GGTGTGAAGTGCGCCAAGGAAGTGGCCACAGCTATCCGAGGGGCGATCAT
CATGGCTAAGCTCTCCATCGTCCCTGTGCGCCGTGGGTACTGGGGTCGAA
AGATCGGGAAGCCCCATACCATCCCGGTGAAGGTTACGGGCAAATGCGGC
TCCGTCTCCGTGCGCCTCGTCCCGGCGCCCCGTGGTTGCGGCCTGGTCGC
TGCCCCCGTCCCGAAGAAGTTGTTGAACATGGCGGGGATCAAGGACGTGT
ATACGGCCACGACCGGTAACTCTCGCACGCTTGGAAATTTCGTCAAGGCC
GTCTTCTCAGCTCTTTCGAAGACCTACGGCTATTTGACCCCCGACCTGTG
GCAGCCGACGGCACTGGGGCAGGCCCCTTATCAAGAGCACACGGACTTTT
TGGCGAGCGGTAAAGTAGAGTATGCGCGACGCAAGGAAGTCGAATATTAA
GTAGGATCTTGCAGGGGCGCGGGATGGAGGGAAGAAGGGAGTGTGGGACG
GATAGGGCTTGACGGCATGCATTGCGTGACGTGGTGGCGGGTCTTCTGGA
GGATGGTATATGGTATGAGTCATGGAAAGGAAGGGAGGGGACGAGAGGCT
TTCGTGCGAGAGCCTTTTGTCTAGAATCAAAGGTATGGACATTCTTGTCG
TCCTTTTCTGGAGGTACCGACAGATGAAAGAAGAAGGAAAAAGCGTCATT
CAGTACAAGCAGACATAGTATACAACAACAATGGAGGGGCGGA
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protein sequence of NO14G02280.1

>NO14G02280.1-protein ID=NO14G02280.1-protein|Name=NO14G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MPLGVRPSPHLRNAGGFSMQTIMIIMCTNCGCLAFSWLLCNQRNSPSLMP
PPPPLFSLPPPSTHTNRTQLFLPLPQHHPSMEGGGDVGRGRGGFGRGRGD
RGGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYS
LPVKEFQIIDKFLAAPPPGVLAPTSGLRDEVMKIMPVQKQTSAGQRTRFK
AFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIG
KPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTA
TTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGQAPYQEHTDFLAS
GKVEYARRKEVEY*
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mRNA from alignment at chr14:686246..687838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02280.1 ID=NO14G02280.1|Name=NO14G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at chr14:686246..687838- (Nannochloropsis oceanica)
ATCTCCTTCTGTCATGCCCTCCGCCCTTTTTCTCTGTTGCCTCTCTTGAA
CCGCACTTGATGCCCTTTCTGACCGCTCACTAAGCAAAGGTGTGTGACTG
AATAACACATGTGCAGGCACATTTGCTGGTGCGGTGGTTGAGGCGCGGAG
GGAGAGCGGATGGTGGGGAGGCTAGCTTCTGGCTTCGCCGACACCCGCCC
TCCCTCCAATGCCTTTGGGCGTCAGGCCATCACCACACTTACGCAACGCG
GGTGGCTTCAGCATGCAGACCATCATGATCATCATGTGTACAAACTGTGG
TTGCCTGGCATTCTCTTGGCTTCTATGCAATCAACGCAACTCACCCTCAC
TCATGCCTCCTCCCCCTCCCCTCTTCTCCCTCCCTCCGCCATCAACCCAC
ACAAACCGCACACAGTTGTTTCTTCCCCTACCCCAACATCATCCAAGCAT
GGAGGGCGGCGGCGACGTTGGACGCGGACGCGGCGGCTTCGGCCGAGGAC
GTGGAGACAGAGGAGGCGACCGTGGTCGTGGCCGTGGCCGCGGACGCGGG
CGTGGTGGGGACAAAGACGAGAAGGAGGGCTGGACCCCCGTGACCAAACT
CGGTCGCCTGGTGAAGGAGGGCAAGATCAAGAGCTTGGAGGAGATCTTCC
TTTACTCTCTGCCTGTCAAGGAGTTTCAGATCATCGACAAGTTCCTCGCT
GCCCCTCCCCCCGGGGTCCTCGCCCCTACCTCGGGCCTTCGCGACGAGGT
CATGAAGATCATGCCCGTGCAAAAGCAGACGTCCGCCGGGCAGCGCACGC
GTTTTAAGGCCTTCGTGGCCATTGGTGACTACGACGGACACGTCGGCCTC
GGTGTGAAGTGCGCCAAGGAAGTGGCCACAGCTATCCGAGGGGCGATCAT
CATGGCTAAGCTCTCCATCGTCCCTGTGCGCCGTGGGTACTGGGGTCGAA
AGATCGGGAAGCCCCATACCATCCCGGTGAAGGTTACGGGCAAATGCGGC
TCCGTCTCCGTGCGCCTCGTCCCGGCGCCCCGTGGTTGCGGCCTGGTCGC
TGCCCCCGTCCCGAAGAAGTTGTTGAACATGGCGGGGATCAAGGACGTGT
ATACGGCCACGACCGGTAACTCTCGCACGCTTGGAAATTTCGTCAAGGCC
GTCTTCTCAGCTCTTTCGAAGACCTACGGCTATTTGACCCCCGACCTGTG
GCAGCCGACGGCACTGGGGCAGGCCCCTTATCAAGAGCACACGGACTTTT
TGGCGAGCGGTAAAGTAGAGTATGCGCGACGCAAGGAAGTCGAATATTAA
GTAGGATCTTGCAGGGGCGCGGGATGGAGGGAAGAAGGGAGTGTGGGACG
GATAGGGCTTGACGGCATGCATTGCGTGACGTGGTGGCGGGTCTTCTGGA
GGATGGTATATGGTATGAGTCATGGAAAGGAAGGGAGGGGACGAGAGGCT
TTCGTGCGAGAGCCTTTTGTCTAGAATCAAAGGTATGGACATTCTTGTCG
TCCTTTTCTGGAGGTACCGACAGATGAAAGAAGAAGGAAAAAGCGTCATT
CAGTACAAGCAGACATAGTATACAACAACAATGGAGGGGCGGA
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Coding sequence (CDS) from alignment at chr14:686246..687838-

>NO14G02280.1 ID=NO14G02280.1|Name=NO14G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr14:686246..687838- (Nannochloropsis oceanica)
ATGCCTTTGGGCGTCAGGCCATCACCACACTTACGCAACGCGGGTGGCTT
CAGCATGCAGACCATCATGATCATCATGTGTACAAACTGTGGTTGCCTGG
CATTCTCTTGGCTTCTATGCAATCAACGCAACTCACCCTCACTCATGCCT
CCTCCCCCTCCCCTCTTCTCCCTCCCTCCGCCATCAACCCACACAAACCG
CACACAGTTGTTTCTTCCCCTACCCCAACATCATCCAAGCATGGAGGGCG
GCGGCGACGTTGGACGCGGACGCGGCGGCTTCGGCCGAGGACGTGGAGAC
AGAGGAGGCGACCGTGGTCGTGGCCGTGGCCGCGGACGCGGGCGTGGTGG
GGACAAAGACGAGAAGGAGGGCTGGACCCCCGTGACCAAACTCGGTCGCC
TGGTGAAGGAGGGCAAGATCAAGAGCTTGGAGGAGATCTTCCTTTACTCT
CTGCCTGTCAAGGAGTTTCAGATCATCGACAAGTTCCTCGCTGCCCCTCC
CCCCGGGGTCCTCGCCCCTACCTCGGGCCTTCGCGACGAGGTCATGAAGA
TCATGCCCGTGCAAAAGCAGACGTCCGCCGGGCAGCGCACGCGTTTTAAG
GCCTTCGTGGCCATTGGTGACTACGACGGACACGTCGGCCTCGGTGTGAA
GTGCGCCAAGGAAGTGGCCACAGCTATCCGAGGGGCGATCATCATGGCTA
AGCTCTCCATCGTCCCTGTGCGCCGTGGGTACTGGGGTCGAAAGATCGGG
AAGCCCCATACCATCCCGGTGAAGGTTACGGGCAAATGCGGCTCCGTCTC
CGTGCGCCTCGTCCCGGCGCCCCGTGGTTGCGGCCTGGTCGCTGCCCCCG
TCCCGAAGAAGTTGTTGAACATGGCGGGGATCAAGGACGTGTATACGGCC
ACGACCGGTAACTCTCGCACGCTTGGAAATTTCGTCAAGGCCGTCTTCTC
AGCTCTTTCGAAGACCTACGGCTATTTGACCCCCGACCTGTGGCAGCCGA
CGGCACTGGGGCAGGCCCCTTATCAAGAGCACACGGACTTTTTGGCGAGC
GGTAAAGTAGAGTATGCGCGACGCAAGGAAGTCGAATATTAA
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Synonyms
Publications