NO14G02150.1, NO14G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02150.1
Unique NameNO14G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2132
Alignment locationchr14:647918..650049 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:647918..650049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02150.1 vs.
Match: XP_005855405.1 (hypothetical protein NGA_2005920 [Nannochloropsis gaditana CCMP526]; XP_005855816.1 hypothetical protein NGA_2005910 [Nannochloropsis gaditana CCMP526]; EKU20544.1 hypothetical protein NGA_2005910 [Nannochloropsis gaditana CCMP526]; EKU20954.1 hypothetical protein NGA_2005920 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 473.8 bits (1218), Expect = 5.300e-130
Identity = 254/386 (65.80%), Postives = 300/386 (77.72%), Query Frame = 0 
Query:    7 LHPFLRVAIVAAFVISSTQAFLSSTKPKVSSTLRTTSRLASTSSTTSSTTSPPSPPPQSETLALTAFADANQQRNELKVALFRSLGQQPPSTSSFGDDDEGLDRVLVCPLTLKPVRRVVRLAGPFGQIANMVSSSGTKYPANDIYIDLVPQDERNQIPFFSPTAMVTQELFRSPLTSFLYERGWRDNFKTAGFPGIDTEFIDLEKFMSPLLLSPATVEAPRQPQQQQQKIRMTSTTIVDLSCGSGLMARRLVRSKKWDRVIAADFSESMLRETRRRFVEEKLAVPELVRVDASRLPFQTDSVDGIHAGAALHCWPRLEESLRECFRVLKPGGRMYASTFEVNERLRSNTFRFFQLEELRKLFVMSGFGEVEVRREGTACLIVKAVK 393
            L PF  +   AAF +++TQ F+    P  S         ++ S + S   +PP+ P ++  +      DA++ R  LK AL+RSLG +  ++S  G+ D  ++ VL CPLTLKP+RRVVRLAGPFGQ+ NMV++ G KYPAN++Y+DLVP +ER Q+PFFSP+A+VTQELFRSPLTSFLYERGWRDNFKTAGFPGID EF DLE F +PL  S A  E+ R+ +QQ++  R    T++DLSCGSGLMARRL RS+KW RVIAADFSESMLRETRRRF+EEKL VPELVR DASR PFQT SVD IHAGAALHCWPRLEESLREC RVLKPGGRMYASTFEVNERL+SNTFRFFQL+ELR+LFV SGF EVEVRREG ACLIVKAVK
Sbjct:    8 LQPF-GLCAAAAFAVTTTQGFVPPITPATSHAGSCVC-FSAPSPSVSIAPTPPTNPAEASPI------DAHELRGVLKDALYRSLGNEATTSSRAGNYD-AMEHVLACPLTLKPLRRVVRLAGPFGQVVNMVTTRGNKYPANEVYMDLVPVEERMQVPFFSPSAIVTQELFRSPLTSFLYERGWRDNFKTAGFPGIDEEFRDLEAFFAPL--SDAGSESEREGEQQRRSGR---GTVIDLSCGSGLMARRLCRSRKWKRVIAADFSESMLRETRRRFLEEKLPVPELVRADASRQPFQTSSVDAIHAGAALHCWPRLEESLRECLRVLKPGGRMYASTFEVNERLQSNTFRFFQLDELRRLFVSSGFVEVEVRREGVACLIVKAVK 379
The following BLAST results are available for this feature:
BLAST of NO14G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855405.15.300e-13065.80hypothetical protein NGA_2005920 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02150NO14G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02150.1NO14G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02150.1.cds1NO14G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02150.1 ID=NO14G02150.1|Name=NO14G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp
CGGAGGATGACGGCCTGGAGGAGGGTGAGACTATCCACCCACCTATACCT
ATATTCTTTCCTTTTGAGCCCTCTATGACATATTCATGCGTTGCCTACTG
AGTTTGAGAAGATGGTGTCTATTTGCATGTTGGGCATGGGATGGATGTGG
GGCGGTGGGCTTGGCGAATATGATCGCACGAAAAACAGCAGGATTGTACC
ATGCCATTCACCCTCATGAAAAATGACAAATCAAGAACCGAGGCATACAA
AAGCAACATACTTTATATTTCATCATCCACATTATGTCGCAATTTTGCTG
AGGTCACCTGGAGACCAATGAGTGATTGGAAGATGAAGATCTTGCTTCAT
CATCATTTTTAAAATCAATGGTTCTATTTGGTAAGGCCCAAAGATTGCTT
TACATCCAGTCATTCTGAAAACCAGACACACGCGGGTGGGATGGACACAG
ACAGACGGCATGCGGCAATATTAGCGGTACGCAGGGGTAAAACAATCAAT
GAAAGTCAATCTTGTGACTAGCAGGAGGAAAAATGCGCCCTCGGACAAGA
AAGGTTTTTCATTTCCTTCGATTCCTAGCAGTTTCCGCTGGCCTTCTTGA
TTATCATTCATTGTGCGCATGAGGTCGTATGATTTATTCAAAGTAAATTA
GCCAGTACCACACAACAGAATACGGTGCAGCGGCTCCTAACAGCAAGCTC
TGTCCGCCCCTTGTCAGAAATCTCCCCCTGCTCTTTCCAGTACAACGCCT
GAGTCATGTCCTGCTCCTATCCACTTCACCCATTTCTACGCGTGGCCATT
GTCGCAGCCTTCGTCATCTCATCCACACAAGCCTTTCTCTCGTCCACTAA
GCCAAAGGTGTCTTCTACGTTGCGCACAACTTCGCGACTGGCCTCCACAT
CGTCCACCACCTCGTCCACCACCTCGCCTCCTTCCCCTCCTCCTCAATCG
GAGACTCTCGCCCTCACCGCATTCGCAGACGCGAACCAGCAGCGTAATGA
GCTGAAGGTCGCCTTGTTTCGGAGCCTGGGACAGCAGCCACCAAGCACCA
GTTCATTTGGTGATGACGACGAGGGTCTTGACCGAGTCCTGGTTTGCCCC
TTAACCCTGAAGCCCGTGCGCCGCGTCGTCCGTCTAGCGGGCCCTTTTGG
GCAGATCGCGAACATGGTTAGCTCGTCTGGAACCAAATACCCTGCGAATG
ATATATACATTGATTTGGTCCCACAAGATGAACGGAATCAGATTCCTTTC
TTCTCCCCCACTGCTATGGTCACCCAAGAGCTGTTTCGTTCCCCGCTCAC
GTCCTTCTTGTACGAACGTGGATGGAGGGATAATTTCAAGACTGCGGGGT
TCCCAGGGATTGACACAGAGTTTATCGACCTGGAGAAATTCATGTCTCCG
CTCTTGCTATCTCCTGCGACCGTTGAGGCACCTCGCCAACCGCAGCAGCA
GCAGCAGAAGATAAGGATGACAAGCACGACGATCGTGGACTTGAGCTGTG
GGAGTGGATTGATGGCCCGTCGGTTGGTTCGTTCCAAGAAATGGGACAGA
GTGATTGCCGCGGATTTCAGTGAGAGTATGCTGCGAGAAACACGGCGCCG
ATTCGTGGAGGAGAAGTTGGCAGTACCGGAGCTAGTGCGTGTTGATGCAT
CGAGGCTCCCATTTCAGACTGACAGTGTGGATGGGATCCATGCGGGAGCG
GCGTTGCACTGTTGGCCTAGGCTGGAGGAAAGCTTGAGGGAGTGCTTTCG
GGTGTTGAAGCCGGGTGGGAGGATGTACGCGTCGACGTTTGAGGTCAACG
AGAGGTTGCGGAGCAATACGTTTCGGTTTTTCCAGTTGGAAGAGCTGAGA
AAGTTGTTTGTCATGAGTGGGTTTGGAGAGGTGGAAGTGCGGAGGGAGGG
GACTGCTTGTTTGATTGTCAAGGCTGTAAAGAAGGGGTAGCATAAGATGT
ACGGAGAAGGAGCAGCACAAAGAGAAGTGACGAATATAGGTGGGATAATG
TAAACAGGCACTAACACGCGCGCGTCCGATTCTCCCCTCTAGCCATTACT
CACCCTAGTGCTTTCTTGCAGGAGAAGATATACAGTGGAGTCTCCAAATT
GTTTAAAAGAACTAGTGAAGCACATGGGCACA
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protein sequence of NO14G02150.1

>NO14G02150.1-protein ID=NO14G02150.1-protein|Name=NO14G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MSCSYPLHPFLRVAIVAAFVISSTQAFLSSTKPKVSSTLRTTSRLASTSS
TTSSTTSPPSPPPQSETLALTAFADANQQRNELKVALFRSLGQQPPSTSS
FGDDDEGLDRVLVCPLTLKPVRRVVRLAGPFGQIANMVSSSGTKYPANDI
YIDLVPQDERNQIPFFSPTAMVTQELFRSPLTSFLYERGWRDNFKTAGFP
GIDTEFIDLEKFMSPLLLSPATVEAPRQPQQQQQKIRMTSTTIVDLSCGS
GLMARRLVRSKKWDRVIAADFSESMLRETRRRFVEEKLAVPELVRVDASR
LPFQTDSVDGIHAGAALHCWPRLEESLRECFRVLKPGGRMYASTFEVNER
LRSNTFRFFQLEELRKLFVMSGFGEVEVRREGTACLIVKAVKKG*
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mRNA from alignment at chr14:647918..650049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02150.1 ID=NO14G02150.1|Name=NO14G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp|location=Sequence derived from alignment at chr14:647918..650049- (Nannochloropsis oceanica)
CGGAGGATGACGGCCTGGAGGAGGGTGAGACTATCCACCCACCTATACCT
ATATTCTTTCCTTTTGAGCCCTCTATGACATATTCATGCGTTGCCTACTG
AGTTTGAGAAGATGGTGTCTATTTGCATGTTGGGCATGGGATGGATGTGG
GGCGGTGGGCTTGGCGAATATGATCGCACGAAAAACAGCAGGATTGTACC
ATGCCATTCACCCTCATGAAAAATGACAAATCAAGAACCGAGGCATACAA
AAGCAACATACTTTATATTTCATCATCCACATTATGTCGCAATTTTGCTG
AGGTCACCTGGAGACCAATGAGTGATTGGAAGATGAAGATCTTGCTTCAT
CATCATTTTTAAAATCAATGGTTCTATTTGGTAAGGCCCAAAGATTGCTT
TACATCCAGTCATTCTGAAAACCAGACACACGCGGGTGGGATGGACACAG
ACAGACGGCATGCGGCAATATTAGCGGTACGCAGGGGTAAAACAATCAAT
GAAAGTCAATCTTGTGACTAGCAGGAGGAAAAATGCGCCCTCGGACAAGA
AAGGTTTTTCATTTCCTTCGATTCCTAGCAGTTTCCGCTGGCCTTCTTGA
TTATCATTCATTGTGCGCATGAGGTCGTATGATTTATTCAAAGTAAATTA
GCCAGTACCACACAACAGAATACGGTGCAGCGGCTCCTAACAGCAAGCTC
TGTCCGCCCCTTGTCAGAAATCTCCCCCTGCTCTTTCCAGTACAACGCCT
GAGTCATGTCCTGCTCCTATCCACTTCACCCATTTCTACGCGTGGCCATT
GTCGCAGCCTTCGTCATCTCATCCACACAAGCCTTTCTCTCGTCCACTAA
GCCAAAGGTGTCTTCTACGTTGCGCACAACTTCGCGACTGGCCTCCACAT
CGTCCACCACCTCGTCCACCACCTCGCCTCCTTCCCCTCCTCCTCAATCG
GAGACTCTCGCCCTCACCGCATTCGCAGACGCGAACCAGCAGCGTAATGA
GCTGAAGGTCGCCTTGTTTCGGAGCCTGGGACAGCAGCCACCAAGCACCA
GTTCATTTGGTGATGACGACGAGGGTCTTGACCGAGTCCTGGTTTGCCCC
TTAACCCTGAAGCCCGTGCGCCGCGTCGTCCGTCTAGCGGGCCCTTTTGG
GCAGATCGCGAACATGGTTAGCTCGTCTGGAACCAAATACCCTGCGAATG
ATATATACATTGATTTGGTCCCACAAGATGAACGGAATCAGATTCCTTTC
TTCTCCCCCACTGCTATGGTCACCCAAGAGCTGTTTCGTTCCCCGCTCAC
GTCCTTCTTGTACGAACGTGGATGGAGGGATAATTTCAAGACTGCGGGGT
TCCCAGGGATTGACACAGAGTTTATCGACCTGGAGAAATTCATGTCTCCG
CTCTTGCTATCTCCTGCGACCGTTGAGGCACCTCGCCAACCGCAGCAGCA
GCAGCAGAAGATAAGGATGACAAGCACGACGATCGTGGACTTGAGCTGTG
GGAGTGGATTGATGGCCCGTCGGTTGGTTCGTTCCAAGAAATGGGACAGA
GTGATTGCCGCGGATTTCAGTGAGAGTATGCTGCGAGAAACACGGCGCCG
ATTCGTGGAGGAGAAGTTGGCAGTACCGGAGCTAGTGCGTGTTGATGCAT
CGAGGCTCCCATTTCAGACTGACAGTGTGGATGGGATCCATGCGGGAGCG
GCGTTGCACTGTTGGCCTAGGCTGGAGGAAAGCTTGAGGGAGTGCTTTCG
GGTGTTGAAGCCGGGTGGGAGGATGTACGCGTCGACGTTTGAGGTCAACG
AGAGGTTGCGGAGCAATACGTTTCGGTTTTTCCAGTTGGAAGAGCTGAGA
AAGTTGTTTGTCATGAGTGGGTTTGGAGAGGTGGAAGTGCGGAGGGAGGG
GACTGCTTGTTTGATTGTCAAGGCTGTAAAGAAGGGGTAGCATAAGATGT
ACGGAGAAGGAGCAGCACAAAGAGAAGTGACGAATATAGGTGGGATAATG
TAAACAGGCACTAACACGCGCGCGTCCGATTCTCCCCTCTAGCCATTACT
CACCCTAGTGCTTTCTTGCAGGAGAAGATATACAGTGGAGTCTCCAAATT
GTTTAAAAGAACTAGTGAAGCACATGGGCACA
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Coding sequence (CDS) from alignment at chr14:647918..650049-

>NO14G02150.1 ID=NO14G02150.1|Name=NO14G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr14:647918..650049- (Nannochloropsis oceanica)
ATGTCCTGCTCCTATCCACTTCACCCATTTCTACGCGTGGCCATTGTCGC
AGCCTTCGTCATCTCATCCACACAAGCCTTTCTCTCGTCCACTAAGCCAA
AGGTGTCTTCTACGTTGCGCACAACTTCGCGACTGGCCTCCACATCGTCC
ACCACCTCGTCCACCACCTCGCCTCCTTCCCCTCCTCCTCAATCGGAGAC
TCTCGCCCTCACCGCATTCGCAGACGCGAACCAGCAGCGTAATGAGCTGA
AGGTCGCCTTGTTTCGGAGCCTGGGACAGCAGCCACCAAGCACCAGTTCA
TTTGGTGATGACGACGAGGGTCTTGACCGAGTCCTGGTTTGCCCCTTAAC
CCTGAAGCCCGTGCGCCGCGTCGTCCGTCTAGCGGGCCCTTTTGGGCAGA
TCGCGAACATGGTTAGCTCGTCTGGAACCAAATACCCTGCGAATGATATA
TACATTGATTTGGTCCCACAAGATGAACGGAATCAGATTCCTTTCTTCTC
CCCCACTGCTATGGTCACCCAAGAGCTGTTTCGTTCCCCGCTCACGTCCT
TCTTGTACGAACGTGGATGGAGGGATAATTTCAAGACTGCGGGGTTCCCA
GGGATTGACACAGAGTTTATCGACCTGGAGAAATTCATGTCTCCGCTCTT
GCTATCTCCTGCGACCGTTGAGGCACCTCGCCAACCGCAGCAGCAGCAGC
AGAAGATAAGGATGACAAGCACGACGATCGTGGACTTGAGCTGTGGGAGT
GGATTGATGGCCCGTCGGTTGGTTCGTTCCAAGAAATGGGACAGAGTGAT
TGCCGCGGATTTCAGTGAGAGTATGCTGCGAGAAACACGGCGCCGATTCG
TGGAGGAGAAGTTGGCAGTACCGGAGCTAGTGCGTGTTGATGCATCGAGG
CTCCCATTTCAGACTGACAGTGTGGATGGGATCCATGCGGGAGCGGCGTT
GCACTGTTGGCCTAGGCTGGAGGAAAGCTTGAGGGAGTGCTTTCGGGTGT
TGAAGCCGGGTGGGAGGATGTACGCGTCGACGTTTGAGGTCAACGAGAGG
TTGCGGAGCAATACGTTTCGGTTTTTCCAGTTGGAAGAGCTGAGAAAGTT
GTTTGTCATGAGTGGGTTTGGAGAGGTGGAAGTGCGGAGGGAGGGGACTG
CTTGTTTGATTGTCAAGGCTGTAAAGAAGGGGTAG
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Synonyms
Publications