NO14G02020.2, NO14G02020.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02020.2
Unique NameNO14G02020.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1741
Alignment locationchr14:614095..616318 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:614095..616318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02020.2 vs.
Match: EWM24603.1 (mpn pad-1 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 596.7 bits (1537), Expect = 6.700e-167
Identity = 324/501 (64.67%), Postives = 368/501 (73.45%), Query Frame = 0 
Query:    1 MPVASPAGAVVEELSKRHLKELDRYVEVPKLQDSTRLSVYYGMSKQVLAQAQQFRESRDIDRAYIFYKRFLRLALDCIPEHIAYKEATFGREKNWLVGERRQALKALEEVNGAITAEIAERCCR-----GV-ASPSCPPVASAAPPSSPGQAMEDDLERRLCHLRGWDALSSKRLLSPLGRGKEGEVGHLLEDELHSPLSVASISGSMMLEPSAPPLFLDDGPPLPPVDADNSVKSGLSATELETAFNSLRLEEADDPASPRVRHYYPCLSSPVGGKKKEKEEEEEGEGKKGELMVSPFAVPGQEVWFRKRGMLRRMVLPSGLVGKFLEIADANSRKPPDGIETCGVLAGVQDGAGLMRCTTLIIPKQEGTSDTVGMTHEEELIGYCCS-----ADGKNLLQLGWIHTHPSQKCFMSSVDIHTHCGYQTMLPEAVAVVVALCNPQKPEVGVFRLTEPEGLQLIQRCELRGFHPHPLPDPQIYKNHHAVMWEDSAFAVVDLR 491
            MP  S  GA  EEL++RHLKELDRYV+VP+L DSTRLSVYYGMSKQVLAQAQ+FR S D++RAYIFYKRFLRLALDCIPEH+AYK+ TF R+KNWLV ERRQALKALEEVN  ITAE A    R     GV  +PS P   ++   +S     ++DL RR   LRG  A S   + S  G+G          +E  +PLS        M EPSAPPLFLDDGP   P DA  +   GLSA EL+ AF SLR+ + DD  S +VR +YP L S        +  + +GE    E M SP  +PGQ  WF KRG LR ++LP+GLVGKFLEIAD NSRKPPDGIETCGVLAGV+DG GLMRCTTLIIPKQEGTSDTV MTHEEELI +CCS      +  NLLQLGWIHTHPSQ CFMSSVDIHTHCGYQTMLPEAVAVVVAL N ++P+VGVFRLTEPEGLQLIQRCELRGFHPHP+PDPQIYK+HH V+WE+S F+VVDLR
Sbjct:   12 MPSTSSGGASAEELTRRHLKELDRYVDVPRLNDSTRLSVYYGMSKQVLAQAQEFRRSHDLERAYIFYKRFLRLALDCIPEHVAYKDGTFSRDKNWLVRERRQALKALEEVNADITAETAAYHRRVPPALGVPPAPSFPSRGASLSAASDCSGEDEDLTRRFQRLRGGGAPSYPGIDSSFGQGDTA------SEENEAPLSPV----LTMPEPSAPPLFLDDGP--APQDA--AENEGLSARELDAAFQSLRMADGDDEPS-QVRRFYPSLPS-------SRASQPKGE----ERMGSPL-IPGQANWFSKRGKLRPLMLPAGLVGKFLEIADKNSRKPPDGIETCGVLAGVRDGQGLMRCTTLIIPKQEGTSDTVSMTHEEELISFCCSGKHPMGEEGNLLQLGWIHTHPSQSCFMSSVDIHTHCGYQTMLPEAVAVVVALVNSRRPQVGVFRLTEPEGLQLIQRCELRGFHPHPIPDPQIYKSHHTVVWEESGFSVVDLR 485
The following BLAST results are available for this feature:
BLAST of NO14G02020.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24603.16.700e-16764.67mpn pad-1 domain-containing protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02020NO14G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02020.2NO14G02020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02020.2.cds1NO14G02020.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02020.2.cds2NO14G02020.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02020.2.cds3NO14G02020.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02020.2.cds4NO14G02020.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02020.2 ID=NO14G02020.2|Name=NO14G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp
CTTAAGCTTCAGTCGGAATCGGGTATACGTAATTTGAGATCAGATAGACG
CAACGGCAGGAGGGAAGGCCGCCTCGCCGCCACTACATCACACCCTCACT
CCCTCCTTATCCACCTCATACACAGACACGGCTCCAATGCCCGTGGCGTC
GCCTGCTGGTGCAGTCGTGGAGGAGCTCTCCAAGCGCCATTTGAAGGAGC
TGGACAGGTATGTGGAGGTTCCCAAGCTTCAAGACAGCACCCGTCTCAGT
GTTTACTATGGGATGAGCAAGCAGGTCCTGGCTCAGGCACAGCAATTCAG
GGAATCGCGCGACATCGATCGGGCCTACATTTTCTATAAGCGCTTCCTCC
GCCTCGCCCTCGATTGCATTCCCGAGCACATTGCCTACAAAGAAGCCACT
TTCGGCCGTGAAAAGAACTGGTTAGTAGGTGAGCGTCGACAGGCGCTTAA
GGCACTGGAAGAGGTCAATGGCGCGATCACAGCAGAAATCGCCGAGCGCT
GTTGTCGAGGTGTGGCTTCTCCTTCTTGCCCTCCCGTTGCATCAGCCGCT
CCTCCATCATCACCAGGCCAAGCTATGGAAGATGACTTGGAAAGGCGCCT
GTGCCATTTAAGAGGATGGGATGCCTTGTCTAGCAAGCGATTGCTCAGTC
CCCTGGGCCGAGGAAAGGAGGGAGAGGTTGGACACCTGCTCGAGGACGAG
CTACATTCACCGTTGTCAGTGGCAAGCATATCTGGGAGCATGATGCTCGA
GCCGTCGGCGCCTCCTTTGTTTTTGGATGATGGCCCTCCTCTTCCTCCGG
TGGACGCCGACAACAGTGTGAAGAGCGGCTTGAGCGCCACTGAGCTCGAA
ACCGCATTTAATTCCTTGCGGTTGGAGGAGGCGGATGACCCTGCATCACC
GAGAGTACGGCATTACTACCCTTGTCTTTCCTCGCCTGTGGGGGGGAAGA
AGAAGGAGAAAGAGGAGGAGGAGGAGGGGGAGGGGAAGAAGGGGGAGTTG
ATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTTTAGGAAGAG
GGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGGGCAAGTTTC
TAGAGATTGCCGATGCGAATAGTAGGAAGCCACCAGATGGCATCGAGACA
TGCGGTGTTCTCGCTGGGGTCCAAGACGGGGCAGGGCTCATGCGTTGCAC
CACTCTAATTATACCCAAGCAAGAGGGCACGTCGGACACCGTCGGCATGA
CACACGAAGAGGAACTCATTGGGTACTGCTGTTCGGCAGATGGGAAGAAT
TTGCTGCAGCTTGGCTGGATCCATACGCACCCGAGTCAGAAGTGCTTCAT
GTCTTCTGTCGACATCCACACGCATTGCGGCTATCAAACCATGTTGCCAG
AAGCCGTCGCCGTGGTCGTCGCGCTGTGCAATCCTCAGAAGCCAGAAGTG
GGCGTCTTCCGCCTGACCGAACCCGAGGGCTTGCAGCTTATTCAGAGGTG
CGAACTACGCGGTTTCCACCCTCATCCTCTGCCCGACCCCCAAATCTACA
AGAACCACCACGCGGTCATGTGGGAAGACTCAGCGTTTGCCGTCGTGGAC
TTGAGATGATGCGATCTTACAATAAGGAGGAAGGAAAATTCAACGAAATG
GATGTACACGTAATTAAGCAAGCATGAGAAGAAACATAAAGTTTACCTGA
AGAAGCTCGAAGCTCGGATCTAATGTATACCGAGAGCTTGC
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protein sequence of NO14G02020.2

>NO14G02020.2-protein ID=NO14G02020.2-protein|Name=NO14G02020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MPVASPAGAVVEELSKRHLKELDRYVEVPKLQDSTRLSVYYGMSKQVLAQ
AQQFRESRDIDRAYIFYKRFLRLALDCIPEHIAYKEATFGREKNWLVGER
RQALKALEEVNGAITAEIAERCCRGVASPSCPPVASAAPPSSPGQAMEDD
LERRLCHLRGWDALSSKRLLSPLGRGKEGEVGHLLEDELHSPLSVASISG
SMMLEPSAPPLFLDDGPPLPPVDADNSVKSGLSATELETAFNSLRLEEAD
DPASPRVRHYYPCLSSPVGGKKKEKEEEEEGEGKKGELMVSPFAVPGQEV
WFRKRGMLRRMVLPSGLVGKFLEIADANSRKPPDGIETCGVLAGVQDGAG
LMRCTTLIIPKQEGTSDTVGMTHEEELIGYCCSADGKNLLQLGWIHTHPS
QKCFMSSVDIHTHCGYQTMLPEAVAVVVALCNPQKPEVGVFRLTEPEGLQ
LIQRCELRGFHPHPLPDPQIYKNHHAVMWEDSAFAVVDLR*
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mRNA from alignment at chr14:614095..616318+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02020.2 ID=NO14G02020.2|Name=NO14G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp|location=Sequence derived from alignment at chr14:614095..616318+ (Nannochloropsis oceanica)
CTTAAGCTTCAGTCGGAATCGGGTATACGTAATTTGAGATCAGATAGACG
CAACGGCAGGAGGGAAGGCCGCCTCGCCGCCACTACATCACACCCTCACT
CCCTCCTTATCCACCTCATACACAGACACGGCTCCAATGCCCGTGGCGTC
GCCTGCTGGTGCAGTCGTGGAGGAGCTCTCCAAGCGCCATTTGAAGGAGC
TGGACAGGTGCGTAGAAAGAAGAGCAGTCACCTGCTGCCGCGAGTTGTAG
GAAGCATGATCAAACCCTCCCTCCTCCCTCCCTGACATAGGTATGTGGAG
GTTCCCAAGCTTCAAGACAGCACCCGTCTCAGTGTTTACTATGGGATGAG
CAAGCAGGTCCTGGCTCAGGCACAGCAATTCAGGGAATCGCGCGACATCG
ATCGGGTACGTCGCACTTCCCTTCTGGGAGGGAAGGAGGGGTTGGAAAGG
CATGCCTTCGGCCGACATCAAGCATAGGGAAGATAAATCCGTATCTGAAT
GAGGAATAATTTGATCGTAATGATGTCTGAAGGGAAAATTTTCCTTGCTT
TGGGATGATCAACTCTTTCAAACACACACCATCTTTTCTCCGTCCCTCTG
CCCTCCTACCACACCGCACGTACCCCAACAGGCCTACATTTTCTATAAGC
GCTTCCTCCGCCTCGCCCTCGATTGCATTCCCGAGCACATTGCCTACAAA
GAAGCCACTTTCGGCCGTGAAAAGAACTGGTTAGTAGGTGAGCGTCGACA
GGCGCTTAAGGCACTGGAAGAGGTCAATGGCGCGATCACAGCAGAAATCG
CCGAGCGCTGTTGTCGAGGTGTGGCTTCTCCTTCTTGCCCTCCCGTTGCA
TCAGCCGCTCCTCCATCATCACCAGGCCAAGCTATGGAAGATGACTTGGA
AAGGCGCCTGTGCCATTTAAGAGGATGGGATGCCTTGTCTAGCAAGCGAT
TGCTCAGTCCCCTGGGCCGAGGAAAGGAGGGAGAGGTTGGACACCTGCTC
GAGGACGAGCTACATTCACCGTTGTCAGTGGCAAGCATATCTGGGAGCAT
GATGCTCGAGCCGTCGGCGCCTCCTTTGTTTTTGGATGATGGCCCTCCTC
TTCCTCCGGTGGACGCCGACAACAGTGTGAAGAGCGGCTTGAGCGCCACT
GAGCTCGAAACCGCATTTAATTCCTTGCGGTTGGAGGAGGCGGATGACCC
TGCATCACCGAGAGTACGGCATTACTACCCTTGTCTTTCCTCGCCTGTGG
GGGGGAAGAAGAAGGAGAAAGAGGAGGAGGAGGAGGGGGAGGGGAAGAAG
GGGGAGTTGATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTT
TAGGAAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGG
GCAAGTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGGTGCGTGCTTCG
GTGCTGGTGGGATGAGAGGAGGAGTGATGACAGGGGTGGTTGGATGTATG
CTTGTCATACTCCGTTTTCTCGTCGTTTCCCTCGGATTATTCTATGGGGC
CTCAATGAAGATCATATTAACCCTGATGTCATTCCTTCTCTCATCTACTC
TCCTTCTCGTAGCCACCAGATGGCATCGAGACATGCGGTGTTCTCGCTGG
GGTCCAAGACGGGGCAGGGCTCATGCGTTGCACCACTCTAATTATACCCA
AGCAAGAGGGCACGTCGGACACCGTCGGCATGACACACGAAGAGGAACTC
ATTGGGTACTGCTGTTCGGCAGATGGGAAGAATTTGCTGCAGCTTGGCTG
GATCCATACGCACCCGAGTCAGAAGTGCTTCATGTCTTCTGTCGACATCC
ACACGCATTGCGGCTATCAAACCATGTTGCCAGAAGCCGTCGCCGTGGTC
GTCGCGCTGTGCAATCCTCAGAAGCCAGAAGTGGGCGTCTTCCGCCTGAC
CGAACCCGAGGGCTTGCAGCTTATTCAGAGGTGCGAACTACGCGGTTTCC
ACCCTCATCCTCTGCCCGACCCCCAAATCTACAAGAACCACCACGCGGTC
ATGTGGGAAGACTCAGCGTTTGCCGTCGTGGACTTGAGATGATGCGATCT
TACAATAAGGAGGAAGGAAAATTCAACGAAATGGATGTACACGTAATTAA
GCAAGCATGAGAAGAAACATAAAGTTTACCTGAAGAAGCTCGAAGCTCGG
ATCTAATGTATACCGAGAGCTTGC
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Coding sequence (CDS) from alignment at chr14:614095..616318+

>NO14G02020.2 ID=NO14G02020.2|Name=NO14G02020.2|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr14:614095..616318+ (Nannochloropsis oceanica)
ATGCCCGTGGCGTCGCCTGCTGGTGCAGTCGTGGAGGAGCTCTCCAAGCG
CCATTTGAAGGAGCTGGACAGGTATGTGGAGGTTCCCAAGCTTCAAGACA
GCACCCGTCTCAGTGTTTACTATGGGATGAGCAAGCAGGTCCTGGCTCAG
GCACAGCAATTCAGGGAATCGCGCGACATCGATCGGGCCTACATTTTCTA
TAAGCGCTTCCTCCGCCTCGCCCTCGATTGCATTCCCGAGCACATTGCCT
ACAAAGAAGCCACTTTCGGCCGTGAAAAGAACTGGTTAGTAGGTGAGCGT
CGACAGGCGCTTAAGGCACTGGAAGAGGTCAATGGCGCGATCACAGCAGA
AATCGCCGAGCGCTGTTGTCGAGGTGTGGCTTCTCCTTCTTGCCCTCCCG
TTGCATCAGCCGCTCCTCCATCATCACCAGGCCAAGCTATGGAAGATGAC
TTGGAAAGGCGCCTGTGCCATTTAAGAGGATGGGATGCCTTGTCTAGCAA
GCGATTGCTCAGTCCCCTGGGCCGAGGAAAGGAGGGAGAGGTTGGACACC
TGCTCGAGGACGAGCTACATTCACCGTTGTCAGTGGCAAGCATATCTGGG
AGCATGATGCTCGAGCCGTCGGCGCCTCCTTTGTTTTTGGATGATGGCCC
TCCTCTTCCTCCGGTGGACGCCGACAACAGTGTGAAGAGCGGCTTGAGCG
CCACTGAGCTCGAAACCGCATTTAATTCCTTGCGGTTGGAGGAGGCGGAT
GACCCTGCATCACCGAGAGTACGGCATTACTACCCTTGTCTTTCCTCGCC
TGTGGGGGGGAAGAAGAAGGAGAAAGAGGAGGAGGAGGAGGGGGAGGGGA
AGAAGGGGGAGTTGATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTT
TGGTTTAGGAAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCT
GGTGGGCAAGTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGCCACCAG
ATGGCATCGAGACATGCGGTGTTCTCGCTGGGGTCCAAGACGGGGCAGGG
CTCATGCGTTGCACCACTCTAATTATACCCAAGCAAGAGGGCACGTCGGA
CACCGTCGGCATGACACACGAAGAGGAACTCATTGGGTACTGCTGTTCGG
CAGATGGGAAGAATTTGCTGCAGCTTGGCTGGATCCATACGCACCCGAGT
CAGAAGTGCTTCATGTCTTCTGTCGACATCCACACGCATTGCGGCTATCA
AACCATGTTGCCAGAAGCCGTCGCCGTGGTCGTCGCGCTGTGCAATCCTC
AGAAGCCAGAAGTGGGCGTCTTCCGCCTGACCGAACCCGAGGGCTTGCAG
CTTATTCAGAGGTGCGAACTACGCGGTTTCCACCCTCATCCTCTGCCCGA
CCCCCAAATCTACAAGAACCACCACGCGGTCATGTGGGAAGACTCAGCGT
TTGCCGTCGTGGACTTGAGATGA
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Synonyms
Publications