NO14G01710.1, NO14G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01710.1
Unique NameNO14G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2396
Alignment locationchr14:527861..530485 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:527861..530485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01710.1 vs.
Match: EWM24663.1 (peptidase u34 dipeptidase [Nannochloropsis gaditana])

HSP 1 Score: 841.3 bits (2172), Expect = 1.800e-240
Identity = 399/544 (73.35%), Postives = 460/544 (84.56%), Query Frame = 0 
Query:   16 LLLAVFLPWVEGCSCFIVTSGASQTETLQVTYAADSHTLYGYLQFFPRSNHSSGDKIKVTDWDSGEYRGVIDQVPLTYNVIGNVNEYGLCITESTWGGLEELASQPDAILDYGSLIYIALQRATSARQALKIMTDLVTEYGYASEGESFTVADPDEVWILEMIGKGGYEKGAVWAAQRIPNGYISAHANQARICSLFPEGNEDEILYSDDAIAFARHIGRFPSDAPDEAFSFSDVYNPLTFETARGCEGRVWDFFHRATAADASIMGPYLDYALGFNLTNRMPLYIKPLAPLRTSDILEAMRSHYEDTPLSFNTDVGAEAFGLPYRWRPLTWTASDGQTYFHERAAATQQTGFNLLAQLRRDMPDPIKALQLFAVDDTDSSVMTPVYGGQTRVPPSYGPGDIAVFEPEKAFWVFNMVANFAYTRYSLIHPDVKQRQKVREEKHQELAASIDNEFVRLWAEDEDKALAMMTNRCVGNAEDLVAEWRKFFGELFVKFMDGNVKTKEDPRQLLPTVKQPGYCIEWRDRVVQETGDRFRVPVAIETME 560
            L L   L   E C+CFIVT GASQ   +QVTYAADSHTLYGYLQF+PRS HS G+ I VTDWDSG +RGVI QVPLTYNV+GNVNE+GLCITESTWGGL ELA QP AILDYGSLIYI LQRA SA++AL++MTDLV EYGYASEGE+FTVADP+EVW+LEMIGKG + KGAVWAA+RIP+GYISAHANQARI +L  EG  D++L+SDD I FAR IGRFP++A D+ FSFSDVYNP+T+  AR CEGRVWDFF RATAAD SIMGPYLDY  G NLT RMPLYIKP+APL TSDI++AMRSHYE+TPL+F+ DVGAEAFGLPYRWRPLTW   DG+T+F+ERAAATQQTGF+LLAQLRR +PDPIKALQ FAVDDTDSSVM PVYGG   VPPSYGPG I+VFEPEKAFW FNMVANFAY RY++I+PDV++RQ   E +  +LA  ID EF RLW ED+ KA+AMMT  CV NAE LV EWR+F+GELFVKFMDGN+KTK++P QLLP V+QPGY +EWR+R+V+ETG+R+R P  + T +
Sbjct:   12 LTLLCVLSMGESCTCFIVTPGASQVGAMQVTYAADSHTLYGYLQFWPRSRHSDGEVINVTDWDSGLFRGVIRQVPLTYNVVGNVNEFGLCITESTWGGLAELAHQPGAILDYGSLIYITLQRAASAQEALQVMTDLVAEYGYASEGETFTVADPEEVWVLEMIGKGEHGKGAVWAAKRIPDGYISAHANQARIQTLESEGI-DQVLFSDDVIDFARRIGRFPTEAQDDLFSFSDVYNPITYLAARACEGRVWDFFRRATAADQSIMGPYLDYVTGRNLTKRMPLYIKPVAPLSTSDIVDAMRSHYENTPLAFDQDVGAEAFGLPYRWRPLTWQLDDGRTFFNERAAATQQTGFSLLAQLRRGVPDPIKALQFFAVDDTDSSVMIPVYGGMALVPPSYGPGSISVFEPEKAFWAFNMVANFAYARYAIINPDVRRRQGALEAQQWKLAVEIDEEFTRLWGEDQIKAVAMMTTACVSNAESLVLEWRRFYGELFVKFMDGNIKTKDNPEQLLPDVEQPGYRLEWRERIVRETGERYRFPADMFTSQ 554
The following BLAST results are available for this feature:
BLAST of NO14G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24663.11.800e-24073.35peptidase u34 dipeptidase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01710NO14G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01710.1NO14G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01710.1.cds1NO14G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01710.1.cds2NO14G01710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01710.1.cds3NO14G01710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01710.1 ID=NO14G01710.1|Name=NO14G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp
AATCTTTCTCTGCTTGGTTCTTTTTGTTCACGCGTTTCCGTAACATCTCC
TGAAAGTGCACGCACCTCCACATATGATTTTCTGCGTTTCCTAGAATTAC
TTTGACTACATAGTGTATGTCATAGTGTCCTCCCTTCTCCGCGCATATAT
CAGCGAAAAGTAGTTACTCAAATGAAAAAAAAAACACCTTCTCATGCACC
TGGAGTAATGGCACCTCGACCACAATTCATTGACCGGTCTCAGCCACACT
ACCCGTAGAGCAGCCGTGGTGGCAGAGCCATCACATACTCGACTGCAAAC
CACGACCCAAAATTGTCCGACATCCGAGTCGGAACCTCCGACGACAGTCT
GTTGGAACCGAACAACCGAACAAATTCATTGTCAAATATACGAAGGCTAC
CAGGTGCAGAGCAGGCCTTCTTGTTTTCTCATCGCACATTTATCCTCTTT
TCTCCCTCATTATTCGCACTCAAACGTTCCCTCCTCCCTACTTCGATGAG
CGCTAATATGCGGTACTGGCGGCTGCGGGCGTCGCTGCTCTTGCTGCTGG
CTGTATTTTTGCCGTGGGTCGAAGGCTGCTCGTGCTTCATTGTCACTTCG
GGCGCGTCACAAACCGAGACTTTGCAAGTCACCTATGCGGCGGACTCCCA
TACTTTGTATGGGTATCTTCAGTTCTTCCCTCGCAGTAATCATTCATCTG
GGGATAAAATCAAAGTGACGGACTGGGATTCAGGTGAATATCGAGGCGTC
ATTGATCAGGTGCCTTTAACATATAATGTTATCGGAAACGTCAATGAATA
TGGGTTGTGCATCACGGAATCGACCTGGGGAGGCCTTGAGGAGCTAGCGA
GTCAGCCCGATGCAATCCTTGACTACGGCTCGCTTATCTATATCGCTCTT
CAGCGTGCTACTTCCGCGCGTCAAGCACTTAAAATCATGACAGATCTTGT
CACCGAGTATGGATACGCTTCGGAAGGAGAAAGCTTCACGGTGGCTGATC
CTGATGAGGTGTGGATCTTGGAGATGATTGGGAAGGGTGGGTACGAGAAA
GGTGCCGTCTGGGCGGCGCAACGGATCCCAAATGGCTACATCTCTGCCCA
TGCGAACCAGGCACGCATTTGCAGTCTATTTCCAGAGGGTAACGAGGATG
AGATTCTGTACTCGGACGATGCGATTGCATTTGCCCGTCATATTGGCCGC
TTTCCCTCTGACGCTCCCGACGAGGCCTTTTCGTTCAGCGATGTGTACAA
TCCTTTGACTTTTGAAACCGCGAGAGGATGTGAGGGCCGTGTCTGGGATT
TCTTCCATCGTGCCACGGCTGCTGATGCGTCCATCATGGGACCCTATCTC
GATTATGCTTTGGGTTTTAATTTGACGAATCGTATGCCCCTGTACATCAA
GCCGCTGGCGCCGCTGCGGACCTCGGACATCCTTGAGGCCATGCGTAGCC
ACTACGAAGATACACCCTTGTCCTTCAACACGGACGTGGGTGCGGAGGCG
TTCGGTCTCCCTTACCGCTGGCGACCTTTGACGTGGACAGCGAGTGACGG
CCAAACGTACTTCCATGAACGTGCAGCCGCCACGCAGCAAACTGGATTCA
ATCTCTTGGCACAACTACGTCGTGACATGCCCGATCCGATCAAGGCTCTG
CAACTGTTTGCGGTGGACGATACGGACTCTTCGGTCATGACTCCTGTTTA
TGGCGGCCAAACGCGTGTCCCCCCTAGCTACGGTCCTGGGGATATCGCGG
TATTTGAGCCGGAGAAGGCATTTTGGGTCTTCAATATGGTTGCAAACTTT
GCCTATACCCGCTACTCTCTAATCCATCCGGATGTCAAGCAACGGCAAAA
AGTCCGAGAAGAAAAGCACCAAGAGCTTGCAGCCTCGATCGACAACGAGT
TTGTTCGACTGTGGGCTGAAGATGAGGACAAGGCGCTCGCCATGATGACG
AACAGATGTGTAGGCAATGCCGAGGACCTTGTGGCTGAATGGAGGAAGTT
TTTTGGGGAATTGTTCGTAAAATTCATGGACGGAAATGTCAAGACGAAGG
AGGATCCACGACAGCTTTTGCCGACAGTCAAGCAACCCGGCTATTGCATT
GAATGGCGAGACCGTGTTGTTCAAGAGACGGGGGACCGATTTCGAGTGCC
AGTAGCGATAGAGACAATGGAGGCAAGGGGATAACCTGCGGTAGAAACGT
GAGTGCGAGTTCTTCGAAGGTTTATTCCGAAAAGGTTAGACTTTGGATGA
TAAGAAGAATAAGTGTCAATAGAATAGTCACGACAAAGGGAAGGAAGTGT
TGAAAGGGAAGGCTAAGGGGACATTGTGTACACTGAAATGAGAAGAAAGA
AAAAAATCGAACACAAAATACACCTCACCTTTTGCGTACTATCCAG
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protein sequence of NO14G01710.1

>NO14G01710.1-protein ID=NO14G01710.1-protein|Name=NO14G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MSANMRYWRLRASLLLLLAVFLPWVEGCSCFIVTSGASQTETLQVTYAAD
SHTLYGYLQFFPRSNHSSGDKIKVTDWDSGEYRGVIDQVPLTYNVIGNVN
EYGLCITESTWGGLEELASQPDAILDYGSLIYIALQRATSARQALKIMTD
LVTEYGYASEGESFTVADPDEVWILEMIGKGGYEKGAVWAAQRIPNGYIS
AHANQARICSLFPEGNEDEILYSDDAIAFARHIGRFPSDAPDEAFSFSDV
YNPLTFETARGCEGRVWDFFHRATAADASIMGPYLDYALGFNLTNRMPLY
IKPLAPLRTSDILEAMRSHYEDTPLSFNTDVGAEAFGLPYRWRPLTWTAS
DGQTYFHERAAATQQTGFNLLAQLRRDMPDPIKALQLFAVDDTDSSVMTP
VYGGQTRVPPSYGPGDIAVFEPEKAFWVFNMVANFAYTRYSLIHPDVKQR
QKVREEKHQELAASIDNEFVRLWAEDEDKALAMMTNRCVGNAEDLVAEWR
KFFGELFVKFMDGNVKTKEDPRQLLPTVKQPGYCIEWRDRVVQETGDRFR
VPVAIETMEARG*
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mRNA from alignment at chr14:527861..530485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01710.1 ID=NO14G01710.1|Name=NO14G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2625bp|location=Sequence derived from alignment at chr14:527861..530485+ (Nannochloropsis oceanica)
AATCTTTCTCTGCTTGGTTCTTTTTGTTCACGCGTTTCCGTAACATCTCC
TGAAAGTGCACGCACCTCCACATATGATTTTCTGCGTTTCCTAGAATTAC
TTTGACTACATAGTGTATGTCATAGTGTCCTCCCTTCTCCGCGCATATAT
CAGCGAAAAGTAGTTACTCAAATGAAAAAAAAAACACCTTCTCATGCACC
TGGAGTAATGGCACCTCGACCACAATTCATTGACCGGTCTCAGCCACACT
ACCCGTAGAGCAGCCGTGGTGGCAGAGCCATCACATACTCGACTGCAAAC
CACGACCCAAAATTGTCCGACATCCGAGTCGGAACCTCCGACGACAGTCT
GTTGGAACCGAACAACCGAACAAATTCATTGTCAAATATACGAAGGCTAC
CAGGTGCAGAGCAGGCCTTCTTGTTTTCTCATCGCACATTTATCCTCTTT
TCTCCCTCATTATTCGCACTCAAACGTTCCCTCCTCCCTACTTCGATGAG
CGCTAATATGCGGTACTGGCGGCTGCGGGCGTCGCTGCTCTTGCTGCTGG
CTGTATTTTTGCCGTGGGTCGAAGGCTGCTCGTGCTTCATTGTCACTTCG
GGCGCGTCACAAACCGAGACTTTGCAAGTCACCTATGCGGCGGACTCCCA
TACTTTGTATGGGTATCTTCAGGTAAGGATTGGGCACGGAATTCTCCCCG
GGGAGCATCTTTTACGGTTGGGCTCATGTGCGGGCCTAACGTTAGGAAGC
CTGTCCCGTATATATATGAAAACACCCGTCCGCATGAATACGCAGTTCTT
CCCTCGCAGTAATCATTCATCTGGGGATAAAATCAAAGTGACGGACTGGG
ATTCAGGTGAATATCGAGGCGTCATTGATCAGGTAAATACATCCTCCCCA
CCCACAAGCGCCCTCATGCCTTTTGAGAGTGTACTTCTGTGTATCAACGC
CCCAGCCCCATCGTCTGTCGAATTCACTCTTGCCTCAGGTGCCTTTAACA
TATAATGTTATCGGAAACGTCAATGAATATGGGTTGTGCATCACGGAATC
GACCTGGGGAGGCCTTGAGGAGCTAGCGAGTCAGCCCGATGCAATCCTTG
ACTACGGCTCGCTTATCTATATCGCTCTTCAGCGTGCTACTTCCGCGCGT
CAAGCACTTAAAATCATGACAGATCTTGTCACCGAGTATGGATACGCTTC
GGAAGGAGAAAGCTTCACGGTGGCTGATCCTGATGAGGTGTGGATCTTGG
AGATGATTGGGAAGGGTGGGTACGAGAAAGGTGCCGTCTGGGCGGCGCAA
CGGATCCCAAATGGCTACATCTCTGCCCATGCGAACCAGGCACGCATTTG
CAGTCTATTTCCAGAGGGTAACGAGGATGAGATTCTGTACTCGGACGATG
CGATTGCATTTGCCCGTCATATTGGCCGCTTTCCCTCTGACGCTCCCGAC
GAGGCCTTTTCGTTCAGCGATGTGTACAATCCTTTGACTTTTGAAACCGC
GAGAGGATGTGAGGGCCGTGTCTGGGATTTCTTCCATCGTGCCACGGCTG
CTGATGCGTCCATCATGGGACCCTATCTCGATTATGCTTTGGGTTTTAAT
TTGACGAATCGTATGCCCCTGTACATCAAGCCGCTGGCGCCGCTGCGGAC
CTCGGACATCCTTGAGGCCATGCGTAGCCACTACGAAGATACACCCTTGT
CCTTCAACACGGACGTGGGTGCGGAGGCGTTCGGTCTCCCTTACCGCTGG
CGACCTTTGACGTGGACAGCGAGTGACGGCCAAACGTACTTCCATGAACG
TGCAGCCGCCACGCAGCAAACTGGATTCAATCTCTTGGCACAACTACGTC
GTGACATGCCCGATCCGATCAAGGCTCTGCAACTGTTTGCGGTGGACGAT
ACGGACTCTTCGGTCATGACTCCTGTTTATGGCGGCCAAACGCGTGTCCC
CCCTAGCTACGGTCCTGGGGATATCGCGGTATTTGAGCCGGAGAAGGCAT
TTTGGGTCTTCAATATGGTTGCAAACTTTGCCTATACCCGCTACTCTCTA
ATCCATCCGGATGTCAAGCAACGGCAAAAAGTCCGAGAAGAAAAGCACCA
AGAGCTTGCAGCCTCGATCGACAACGAGTTTGTTCGACTGTGGGCTGAAG
ATGAGGACAAGGCGCTCGCCATGATGACGAACAGATGTGTAGGCAATGCC
GAGGACCTTGTGGCTGAATGGAGGAAGTTTTTTGGGGAATTGTTCGTAAA
ATTCATGGACGGAAATGTCAAGACGAAGGAGGATCCACGACAGCTTTTGC
CGACAGTCAAGCAACCCGGCTATTGCATTGAATGGCGAGACCGTGTTGTT
CAAGAGACGGGGGACCGATTTCGAGTGCCAGTAGCGATAGAGACAATGGA
GGCAAGGGGATAACCTGCGGTAGAAACGTGAGTGCGAGTTCTTCGAAGGT
TTATTCCGAAAAGGTTAGACTTTGGATGATAAGAAGAATAAGTGTCAATA
GAATAGTCACGACAAAGGGAAGGAAGTGTTGAAAGGGAAGGCTAAGGGGA
CATTGTGTACACTGAAATGAGAAGAAAGAAAAAAATCGAACACAAAATAC
ACCTCACCTTTTGCGTACTATCCAG
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Coding sequence (CDS) from alignment at chr14:527861..530485+

>NO14G01710.1 ID=NO14G01710.1|Name=NO14G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr14:527861..530485+ (Nannochloropsis oceanica)
ATGAGCGCTAATATGCGGTACTGGCGGCTGCGGGCGTCGCTGCTCTTGCT
GCTGGCTGTATTTTTGCCGTGGGTCGAAGGCTGCTCGTGCTTCATTGTCA
CTTCGGGCGCGTCACAAACCGAGACTTTGCAAGTCACCTATGCGGCGGAC
TCCCATACTTTGTATGGGTATCTTCAGTTCTTCCCTCGCAGTAATCATTC
ATCTGGGGATAAAATCAAAGTGACGGACTGGGATTCAGGTGAATATCGAG
GCGTCATTGATCAGGTGCCTTTAACATATAATGTTATCGGAAACGTCAAT
GAATATGGGTTGTGCATCACGGAATCGACCTGGGGAGGCCTTGAGGAGCT
AGCGAGTCAGCCCGATGCAATCCTTGACTACGGCTCGCTTATCTATATCG
CTCTTCAGCGTGCTACTTCCGCGCGTCAAGCACTTAAAATCATGACAGAT
CTTGTCACCGAGTATGGATACGCTTCGGAAGGAGAAAGCTTCACGGTGGC
TGATCCTGATGAGGTGTGGATCTTGGAGATGATTGGGAAGGGTGGGTACG
AGAAAGGTGCCGTCTGGGCGGCGCAACGGATCCCAAATGGCTACATCTCT
GCCCATGCGAACCAGGCACGCATTTGCAGTCTATTTCCAGAGGGTAACGA
GGATGAGATTCTGTACTCGGACGATGCGATTGCATTTGCCCGTCATATTG
GCCGCTTTCCCTCTGACGCTCCCGACGAGGCCTTTTCGTTCAGCGATGTG
TACAATCCTTTGACTTTTGAAACCGCGAGAGGATGTGAGGGCCGTGTCTG
GGATTTCTTCCATCGTGCCACGGCTGCTGATGCGTCCATCATGGGACCCT
ATCTCGATTATGCTTTGGGTTTTAATTTGACGAATCGTATGCCCCTGTAC
ATCAAGCCGCTGGCGCCGCTGCGGACCTCGGACATCCTTGAGGCCATGCG
TAGCCACTACGAAGATACACCCTTGTCCTTCAACACGGACGTGGGTGCGG
AGGCGTTCGGTCTCCCTTACCGCTGGCGACCTTTGACGTGGACAGCGAGT
GACGGCCAAACGTACTTCCATGAACGTGCAGCCGCCACGCAGCAAACTGG
ATTCAATCTCTTGGCACAACTACGTCGTGACATGCCCGATCCGATCAAGG
CTCTGCAACTGTTTGCGGTGGACGATACGGACTCTTCGGTCATGACTCCT
GTTTATGGCGGCCAAACGCGTGTCCCCCCTAGCTACGGTCCTGGGGATAT
CGCGGTATTTGAGCCGGAGAAGGCATTTTGGGTCTTCAATATGGTTGCAA
ACTTTGCCTATACCCGCTACTCTCTAATCCATCCGGATGTCAAGCAACGG
CAAAAAGTCCGAGAAGAAAAGCACCAAGAGCTTGCAGCCTCGATCGACAA
CGAGTTTGTTCGACTGTGGGCTGAAGATGAGGACAAGGCGCTCGCCATGA
TGACGAACAGATGTGTAGGCAATGCCGAGGACCTTGTGGCTGAATGGAGG
AAGTTTTTTGGGGAATTGTTCGTAAAATTCATGGACGGAAATGTCAAGAC
GAAGGAGGATCCACGACAGCTTTTGCCGACAGTCAAGCAACCCGGCTATT
GCATTGAATGGCGAGACCGTGTTGTTCAAGAGACGGGGGACCGATTTCGA
GTGCCAGTAGCGATAGAGACAATGGAGGCAAGGGGATAA
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Synonyms
Publications