NO14G01680.1, NO14G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01680.1
Unique NameNO14G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1626
Alignment locationchr14:519617..521434 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:519617..521434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01680.1 vs.
Match: EWM24652.1 (hypothetical protein Naga_100055g12 [Nannochloropsis gaditana])

HSP 1 Score: 714.9 bits (1844), Expect = 1.900e-202
Identity = 401/547 (73.31%), Postives = 454/547 (83.00%), Query Frame = 0 
Query:    2 MWRVLGLLLLSQAVLGFLPRC-------PVPAANARLASSSTAASLGPLSA-SGGGGEYDLLKGSSSVSKVSNDPAPGEFDLLGGNAQEDA-VIKEDPYDVLLAELIFTTEDVREVIYKRLDDCNAGFVDFLESRISEATDLDERQALRSLVEMVDAVKKAVERKKVEDAARMKEEQQQQLEEEAKLMAEMAEAKKRAQTVQETEAQRQSQREELQRLQGRGAGDAAAGAVGMGGNEAAAAMDPKQSYEQLLEAFLGLDFGDASYVREVVEANYERCTMEFLDLLGERLADASTPSDMLSRLTALKGHIEYILQERMSRAAERLQNIVKAGAVDAMLEKIYELNDRGEIDEPFILLLETNVQQAERAGAAPAAELFRKLVATAREAIDEKLTPSTRLVRRLLRVTDSEKRKEVLHDAFRPKATSLTAEGAKTEAMPDVPPPDFIEELRQLIKNFGNIEANDFGAMLRALVEEAEEVSTTIYGKAMTHREQQDYMWQKGSVSVFDLEALEGKAQATGEQMPWQNDAYDSMMPPGFENGVRTIGGNDKS 540
            M R+L  LLL++ V+GFLP C        VP   +   +SS +A    L+A SGGGGEYDLLKG+++V + S+   P EFDLLGG AQ++A VI+EDP+D LLAELIFTTEDVREVIYKRL+DCN+GF DFLE RIS ATDL+ERQALRSLVEM++AVKKAVERKKVED  R++EEQ +QLEEEA+L AE AEA+KR  T QE E +  S+REE      +  G   A +V      +A AMDPKQSYEQLLEAFLGLDFG   YVREVVEANYERCTMEFLDLLGERL D STP  + SRL ALKGHIE IL+ RMSRAAERLQ+IVKAGA+D M++++YELN R E+DEP ILLLETNVQQAERAGAAPAAELFRKL+ATAREAIDEKL+ STRLVRRLLRV D EKRKE+LHDAFRPKA++LTAEGAKT AMPDVPPPDFIEELRQLIKNFGNIE ++F   LR LVEEAEEVSTTIYGKAM+HREQQDYMWQKGS+SVFDLEALEGKAQA G+QMPWQNDAYD+MMPPGFE+GVRTIGGNDKS
Sbjct:    1 MRRILVSLLLAREVMGFLPPCLPHQEAAHVPVTMSPRGTSSPSA----LAAWSGGGGEYDLLKGNNNVDRTSDGNLP-EFDLLGGKAQKEASVIREDPHDTLLAELIFTTEDVREVIYKRLEDCNSGFADFLEGRISMATDLEERQALRSLVEMIEAVKKAVERKKVEDTVRIREEQLRQLEEEARLAAERAEARKRP-TWQEGEVKDSSEREEY----AQSMGTDVAPSVREDVEASALAMDPKQSYEQLLEAFLGLDFGKEEYVREVVEANYERCTMEFLDLLGERLKDDSTPPGVQSRLMALKGHIEDILRARMSRAAERLQSIVKAGALDEMVDQVYELNQRNEVDEPLILLLETNVQQAERAGAAPAAELFRKLLATAREAIDEKLSMSTRLVRRLLRVADPEKRKEILHDAFRPKASALTAEGAKTGAMPDVPPPDFIEELRQLIKNFGNIETDNFAEKLRTLVEEAEEVSTTIYGKAMSHREQQDYMWQKGSISVFDLEALEGKAQAVGDQMPWQNDAYDNMMPPGFEDGVRTIGGNDKS 537
The following BLAST results are available for this feature:
BLAST of NO14G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24652.11.900e-20273.31hypothetical protein Naga_100055g12 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01680NO14G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01680.1NO14G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01680.1.cds1NO14G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01680.1.cds2NO14G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01680.1 ID=NO14G01680.1|Name=NO14G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
ATGATGTGGCGCGTTCTGGGTCTTCTCCTCCTCTCCCAAGCGGTTTTAGG
TTTTTTGCCTCGTTGTCCGGTACCTGCCGCTAATGCCCGCCTAGCCTCCA
GTAGCACAGCCGCAAGTCTAGGGCCCTTGTCAGCCTCGGGCGGCGGAGGG
GAATACGACCTTCTCAAAGGTAGTAGTAGTGTCAGCAAGGTCAGCAATGA
TCCGGCTCCAGGCGAATTCGACTTGTTGGGTGGAAACGCACAGGAAGATG
CCGTCATCAAAGAGGACCCATATGACGTGTTGCTGGCGGAGCTCATCTTT
ACGACCGAGGACGTGCGGGAAGTGATTTACAAGCGACTGGACGACTGTAA
TGCCGGGTTTGTGGACTTTTTGGAAAGCCGCATCAGCGAGGCCACGGACC
TGGACGAGCGGCAAGCGCTGCGCTCGCTCGTGGAAATGGTAGACGCCGTC
AAGAAGGCCGTGGAGCGGAAGAAGGTGGAAGACGCGGCGCGGATGAAGGA
GGAACAGCAACAGCAGCTGGAGGAAGAAGCTAAGCTTATGGCAGAAATGG
CAGAGGCCAAGAAGCGGGCCCAGACAGTGCAAGAGACTGAAGCGCAACGT
CAGAGCCAGCGTGAGGAGCTCCAGCGTCTGCAGGGTAGGGGTGCGGGAGA
TGCGGCGGCGGGGGCGGTGGGGATGGGCGGGAACGAGGCGGCCGCGGCCA
TGGACCCAAAACAGAGCTATGAGCAGTTGCTGGAGGCCTTCTTGGGTCTT
GACTTTGGGGATGCCTCGTATGTGCGGGAGGTAGTAGAGGCCAACTATGA
GCGATGCACCATGGAGTTCTTGGACCTGCTGGGCGAGCGCCTGGCAGATG
CCTCCACGCCTTCCGACATGCTCTCCCGCCTGACGGCTCTTAAGGGCCAC
ATCGAGTATATTCTGCAGGAGCGCATGTCCCGAGCGGCGGAGCGTTTGCA
AAACATCGTCAAGGCCGGGGCCGTGGACGCCATGCTCGAGAAGATTTACG
AGCTGAACGACCGGGGCGAAATTGATGAGCCCTTTATCTTGCTACTCGAG
ACGAATGTGCAGCAGGCGGAGCGAGCTGGGGCAGCTCCTGCGGCGGAATT
ATTTCGCAAACTCGTGGCCACGGCCCGGGAAGCGATCGACGAGAAGCTGA
CTCCGTCCACGCGGTTGGTCCGACGCTTGCTGCGGGTGACCGACTCGGAG
AAGCGCAAGGAGGTGTTGCACGACGCCTTTCGACCCAAGGCCACCTCCTT
GACGGCAGAGGGGGCTAAAACCGAGGCTATGCCGGACGTGCCCCCGCCCG
ATTTCATCGAGGAGCTCCGGCAGCTCATCAAGAACTTTGGGAACATCGAG
GCCAACGACTTTGGGGCCATGCTGCGGGCCCTGGTGGAGGAGGCGGAAGA
GGTCTCCACCACTATCTATGGCAAGGCCATGACCCATCGCGAGCAACAGG
ACTACATGTGGCAGAAGGGCTCCGTCTCGGTCTTTGACCTTGAGGCCTTG
GAAGGCAAGGCGCAGGCAACAGGTGAGCAAATGCCATGGCAAAATGATGC
CTATGACTCCATGATGCCCCCAGGTTTTGAGAACGGCGTCCGCACCATTG
GCGGCAACGACAAGAGCAAATTTTGA
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protein sequence of NO14G01680.1

>NO14G01680.1-protein ID=NO14G01680.1-protein|Name=NO14G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MMWRVLGLLLLSQAVLGFLPRCPVPAANARLASSSTAASLGPLSASGGGG
EYDLLKGSSSVSKVSNDPAPGEFDLLGGNAQEDAVIKEDPYDVLLAELIF
TTEDVREVIYKRLDDCNAGFVDFLESRISEATDLDERQALRSLVEMVDAV
KKAVERKKVEDAARMKEEQQQQLEEEAKLMAEMAEAKKRAQTVQETEAQR
QSQREELQRLQGRGAGDAAAGAVGMGGNEAAAAMDPKQSYEQLLEAFLGL
DFGDASYVREVVEANYERCTMEFLDLLGERLADASTPSDMLSRLTALKGH
IEYILQERMSRAAERLQNIVKAGAVDAMLEKIYELNDRGEIDEPFILLLE
TNVQQAERAGAAPAAELFRKLVATAREAIDEKLTPSTRLVRRLLRVTDSE
KRKEVLHDAFRPKATSLTAEGAKTEAMPDVPPPDFIEELRQLIKNFGNIE
ANDFGAMLRALVEEAEEVSTTIYGKAMTHREQQDYMWQKGSVSVFDLEAL
EGKAQATGEQMPWQNDAYDSMMPPGFENGVRTIGGNDKSKF*
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mRNA from alignment at chr14:519617..521434+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01680.1 ID=NO14G01680.1|Name=NO14G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr14:519617..521434+ (Nannochloropsis oceanica)
ATGATGTGGCGCGTTCTGGGTCTTCTCCTCCTCTCCCAAGCGGTTTTAGG
TTTTTTGCCTCGTTGTCCGGTACCTGCCGCTAATGCCCGCCTAGCCTCCA
GTAGCACAGCCGCAAGTCTAGGGCCCTTGTCAGCCTCGGGCGGCGGAGGG
GAATACGACCTTCTCAAAGGTAGTAGTAGTGTCAGCAAGGTCAGCAATGA
TCCGGCTCCAGGCGAATTCGACTTGTTGGGTGGAAACGCACAGGAAGATG
CCGTCATCAAAGAGGTAAGTTGTGCGGATTAGGGTATGAGACGTGATACG
AGCGCAGCACTCGAAAGGGAGTGTCGGTACGTGGTCAGCAAGGTCGCGTT
GGAGAATATATGCTGAATGATGTTTGGTGTGTGATATGAGATGTCGTCCC
CGTTGTATTCGTCTCTCAATCACCCGCCTTTCCGTACCCTCTCCACCCTT
CCTCAGGACCCATATGACGTGTTGCTGGCGGAGCTCATCTTTACGACCGA
GGACGTGCGGGAAGTGATTTACAAGCGACTGGACGACTGTAATGCCGGGT
TTGTGGACTTTTTGGAAAGCCGCATCAGCGAGGCCACGGACCTGGACGAG
CGGCAAGCGCTGCGCTCGCTCGTGGAAATGGTAGACGCCGTCAAGAAGGC
CGTGGAGCGGAAGAAGGTGGAAGACGCGGCGCGGATGAAGGAGGAACAGC
AACAGCAGCTGGAGGAAGAAGCTAAGCTTATGGCAGAAATGGCAGAGGCC
AAGAAGCGGGCCCAGACAGTGCAAGAGACTGAAGCGCAACGTCAGAGCCA
GCGTGAGGAGCTCCAGCGTCTGCAGGGTAGGGGTGCGGGAGATGCGGCGG
CGGGGGCGGTGGGGATGGGCGGGAACGAGGCGGCCGCGGCCATGGACCCA
AAACAGAGCTATGAGCAGTTGCTGGAGGCCTTCTTGGGTCTTGACTTTGG
GGATGCCTCGTATGTGCGGGAGGTAGTAGAGGCCAACTATGAGCGATGCA
CCATGGAGTTCTTGGACCTGCTGGGCGAGCGCCTGGCAGATGCCTCCACG
CCTTCCGACATGCTCTCCCGCCTGACGGCTCTTAAGGGCCACATCGAGTA
TATTCTGCAGGAGCGCATGTCCCGAGCGGCGGAGCGTTTGCAAAACATCG
TCAAGGCCGGGGCCGTGGACGCCATGCTCGAGAAGATTTACGAGCTGAAC
GACCGGGGCGAAATTGATGAGCCCTTTATCTTGCTACTCGAGACGAATGT
GCAGCAGGCGGAGCGAGCTGGGGCAGCTCCTGCGGCGGAATTATTTCGCA
AACTCGTGGCCACGGCCCGGGAAGCGATCGACGAGAAGCTGACTCCGTCC
ACGCGGTTGGTCCGACGCTTGCTGCGGGTGACCGACTCGGAGAAGCGCAA
GGAGGTGTTGCACGACGCCTTTCGACCCAAGGCCACCTCCTTGACGGCAG
AGGGGGCTAAAACCGAGGCTATGCCGGACGTGCCCCCGCCCGATTTCATC
GAGGAGCTCCGGCAGCTCATCAAGAACTTTGGGAACATCGAGGCCAACGA
CTTTGGGGCCATGCTGCGGGCCCTGGTGGAGGAGGCGGAAGAGGTCTCCA
CCACTATCTATGGCAAGGCCATGACCCATCGCGAGCAACAGGACTACATG
TGGCAGAAGGGCTCCGTCTCGGTCTTTGACCTTGAGGCCTTGGAAGGCAA
GGCGCAGGCAACAGGTGAGCAAATGCCATGGCAAAATGATGCCTATGACT
CCATGATGCCCCCAGGTTTTGAGAACGGCGTCCGCACCATTGGCGGCAAC
GACAAGAGCAAATTTTGA
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Coding sequence (CDS) from alignment at chr14:519617..521434+

>NO14G01680.1 ID=NO14G01680.1|Name=NO14G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr14:519617..521434+ (Nannochloropsis oceanica)
ATGATGTGGCGCGTTCTGGGTCTTCTCCTCCTCTCCCAAGCGGTTTTAGG
TTTTTTGCCTCGTTGTCCGGTACCTGCCGCTAATGCCCGCCTAGCCTCCA
GTAGCACAGCCGCAAGTCTAGGGCCCTTGTCAGCCTCGGGCGGCGGAGGG
GAATACGACCTTCTCAAAGGTAGTAGTAGTGTCAGCAAGGTCAGCAATGA
TCCGGCTCCAGGCGAATTCGACTTGTTGGGTGGAAACGCACAGGAAGATG
CCGTCATCAAAGAGGACCCATATGACGTGTTGCTGGCGGAGCTCATCTTT
ACGACCGAGGACGTGCGGGAAGTGATTTACAAGCGACTGGACGACTGTAA
TGCCGGGTTTGTGGACTTTTTGGAAAGCCGCATCAGCGAGGCCACGGACC
TGGACGAGCGGCAAGCGCTGCGCTCGCTCGTGGAAATGGTAGACGCCGTC
AAGAAGGCCGTGGAGCGGAAGAAGGTGGAAGACGCGGCGCGGATGAAGGA
GGAACAGCAACAGCAGCTGGAGGAAGAAGCTAAGCTTATGGCAGAAATGG
CAGAGGCCAAGAAGCGGGCCCAGACAGTGCAAGAGACTGAAGCGCAACGT
CAGAGCCAGCGTGAGGAGCTCCAGCGTCTGCAGGGTAGGGGTGCGGGAGA
TGCGGCGGCGGGGGCGGTGGGGATGGGCGGGAACGAGGCGGCCGCGGCCA
TGGACCCAAAACAGAGCTATGAGCAGTTGCTGGAGGCCTTCTTGGGTCTT
GACTTTGGGGATGCCTCGTATGTGCGGGAGGTAGTAGAGGCCAACTATGA
GCGATGCACCATGGAGTTCTTGGACCTGCTGGGCGAGCGCCTGGCAGATG
CCTCCACGCCTTCCGACATGCTCTCCCGCCTGACGGCTCTTAAGGGCCAC
ATCGAGTATATTCTGCAGGAGCGCATGTCCCGAGCGGCGGAGCGTTTGCA
AAACATCGTCAAGGCCGGGGCCGTGGACGCCATGCTCGAGAAGATTTACG
AGCTGAACGACCGGGGCGAAATTGATGAGCCCTTTATCTTGCTACTCGAG
ACGAATGTGCAGCAGGCGGAGCGAGCTGGGGCAGCTCCTGCGGCGGAATT
ATTTCGCAAACTCGTGGCCACGGCCCGGGAAGCGATCGACGAGAAGCTGA
CTCCGTCCACGCGGTTGGTCCGACGCTTGCTGCGGGTGACCGACTCGGAG
AAGCGCAAGGAGGTGTTGCACGACGCCTTTCGACCCAAGGCCACCTCCTT
GACGGCAGAGGGGGCTAAAACCGAGGCTATGCCGGACGTGCCCCCGCCCG
ATTTCATCGAGGAGCTCCGGCAGCTCATCAAGAACTTTGGGAACATCGAG
GCCAACGACTTTGGGGCCATGCTGCGGGCCCTGGTGGAGGAGGCGGAAGA
GGTCTCCACCACTATCTATGGCAAGGCCATGACCCATCGCGAGCAACAGG
ACTACATGTGGCAGAAGGGCTCCGTCTCGGTCTTTGACCTTGAGGCCTTG
GAAGGCAAGGCGCAGGCAACAGGTGAGCAAATGCCATGGCAAAATGATGC
CTATGACTCCATGATGCCCCCAGGTTTTGAGAACGGCGTCCGCACCATTG
GCGGCAACGACAAGAGCAAATTTTGA
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Synonyms
Publications