NO14G01600.2, NO14G01600.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01600.2
Unique NameNO14G01600.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3081
Alignment locationchr14:503725..507090 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:503725..507090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G01600.2 vs.
Match: EWM24667.1 (Protein of unknown function DUF3172 [Nannochloropsis gaditana])

HSP 1 Score: 220.7 bits (561), Expect = 6.900e-54
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0 
Query:  231 FTQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLE-NPKLGVGEDVYDK 339
            F QRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLE NPKLGVGEDVYDK
Sbjct:  164 FCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYDK 272
The following BLAST results are available for this feature:
BLAST of NO14G01600.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24667.16.900e-5498.17Protein of unknown function DUF3172 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01600NO14G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01600.2NO14G01600.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01600.2.cds1NO14G01600.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01600.2.cds2NO14G01600.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01600.2.cds3NO14G01600.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01600.2 ID=NO14G01600.2|Name=NO14G01600.2|organism=Nannochloropsis oceanica|type=mRNA|length=3081bp
ACGACTATTATATTTTTTGCTTCTTTTGGGGTTTTCCTTTTTTCTGACTG
GGGGATATACAAATTAACAAGCGTACATGAAAGTGGCGACGTATTCGCAT
ATACATTCACATGCTTCTCTTCCTCCTTCGTATTCATTCTTTTGCTTTGT
AAATGCTGCTCACCTTGGCGCTCGATGACCTGGCTTGGGTGAGGCGGCTC
TCTTGGCCACACTCGCTTTTTTGGGCTTGACAACACCCCCATTCGTGGCC
TTTCCCCCACCGGCCTCGTCTGTCCTTTCCTGTGCTGCATGACGACGAGT
GGCGCTGGCCGGCGTGTCCTTGCCACCCCGTACGGTTGTCATCAGCGTCT
CCACTGCCCCTGTTCCTGTCATGCATTCATCAAGCTCGACCCCGTTAAGC
AGCTTGCTGGGTGGGATCCCTGACCCTAGCGCGGGAGAAGGTGTCCTCTC
GGCAACATCCCTTTGTCGGACAGCAGCAGTGGCGGCCCGGACAAGGGTGT
AGGTCCCAAGGCCTACAACTACCATGGCTAGAAGTTTGCAGGTAACAGAA
AGATCGCCTTGCTTGCCAAAGGGCCACGCCAAGCCCCAAAGATCCCGCCG
CCCGCGCCCTCCGCTTGGCAAGGTGCCGCTGAGAGGCCGGGTGTCAGGGG
AAGCGTCCGTAGGCAAGGGCGCGAACGTAATGGGCTCGAGGCGCCCAAAG
AAGGCGCGGAGGTTGAGACCAGGCCCTGGGTGACAACGCATGTCGATGGC
TTCCACCAGGTGGCTGCGAATTCCGCCATCCACCATCGCCCGGCGAGGAG
GGTCTTGTTCAAACATGAAGAAGAAGGTGGGGATCAAGCTGCCCTCCGCC
CTCAATGAAGAACCCGAATCCATGGCAAGCATTAAGTTGTTCAGGTGCAT
GAGATTGCCGCACTCCACCTTCTCCATGTGCTTCACAATCACCACCAACT
CCCCGTCTACGCCCACCGCCTGGGACGCCTGGACCAAAGCATCACGCACA
CCGCCCGTCGATGTCACCCAGTCACCTGGCTTTGCGAGTTGAGCCGCGTT
CCATTGCATGCAGCCCCGACCGTCTGCCAGCACTTCAAGGACCGCTCTTG
CCGCAGTCCGGGCCTGCGCCCCGATGAGAGCTAGCTTGGTTACTTTGTCT
CCAGAGTATAACCCGTCGCTCAGCGCATTGACCAGCTGTTGAATGGCCCG
AGCTTGGCTCACAACCACCAGGCTCTCGGCTGTGTATTCAGTGGTGTATA
GAGACATGACGGCATGGTGTTGGGAGAGGCGTGGAGTAGAAAAGACAACA
TATTGTAGGTGTGAGCATGACCGGGCTGGTATGAGAGGTACATGTATATG
AATGGGAAACTTGGAAAGGAGAGGTTAAGAAACTCCACACTTACTCAAGC
GGTCCTTCATCGTCGCTTCATCCCGAGAGGCCGGCACAATCTGCAGCAAC
ACCATCAGCAGGACATATCCCAGGAGCTGGCGCGGCACGCTCCAAATATG
GCGGTGGGCAGCCATCATGACGACACGTCCGGGTTGAGACGTGTTTGGAG
TGGGCGATCACGGGGACAAAAGCGCAACGCAGCCTTTCGAAAGCTTTTCT
GTGCAGTTGTGGGAAGAAGACAAGGGGTTATGGCATGTGATGTTTAGTTG
TGGTTGCTGGCTGCCTAAACCAGCCTCGAGTGCCAAGGTCCTGGGCCCAC
GGACTTCTCGGACTACTGCATAGCTTCGTAACTTGGGCGAGAGCTTCCGC
GAAGGCCACCGCTCTGCCGCACTGGCTCACTATGCCTAATAAAGACCTTT
TATCCCTAATCATACCCAACAGGACAGGAAGACCCCACGAAGGACTCACC
GGCTGTGCTGGAAAGCTGCAGTCTCCAGCAAGCGCGTAACTAGCCAAGCT
TACTCAAGGTCTTGCTTCGCTCATTCATGGAGCCTCAGCCCACTATCTCT
CGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGGCTGGCTCT
GCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTTC
CCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGCTTGGTCTC
CGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGGAGGAGGCT
AGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAAACGCCGTC
GTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGGAAGAGGAA
GAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTACGCCCTCC
ACCCCCGCCCCGGATCCGCCCAGAGGTGGGCAAGAACCGGCTACCATTTG
GCGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCATGGGCACA
TTTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCATCAACAC
CAACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAACGCCCCTA
ATCCCAAATTCTGCCAGGTGAGTTGCGCGTTGCTCGTCAGTCTTGAACCA
CCCTCTCGCCTGTCTTGTTCACTTGTCGCCCCATTCATCTCCTCGGGTCA
TACCCTCCTTACCTCCTTCACCCAGCGCTACGGTGCCAGCACATTAGTGC
TGGACAACCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTACGTAACG
CAGGCTGACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATGTGGTACA
GGCCCTGCAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAATGTCTGTA
AGAACGGCAATAATACCTGGGCGTACGTTGGTGACATCAATGACAAGCCC
CAGCTCTCCTGTGTGTACCAATCCGACGACGCACAGAATGAGTTTTTGGA
GAACCCCAAGCTGGGCGTAGGAGAAGATGTGTACGACAAATAGACAATGA
AAGTGGAAAAAAAATTAAATCCTTGCTGTAAATACTGGTGAAGAAAGACT
CATGAAGGGTTAGAAGCGTGCGTGATCCCCGCTCAGTAAAAATGTTGAAA
AACGAAGAAGTAACAGTAACATTGCGAAAAG
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protein sequence of NO14G01600.2

>NO14G01600.2-protein ID=NO14G01600.2-protein|Name=NO14G01600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MEPQPTISRSTRRKTIAPLPCGLALLFIVCGCCLPLSQAFLPPHFSQAGS
RTLSLLGLRQPSSSRSSSLRLGRRLGIPLYSMLDKEGNKRRRRRRQGNGN
ESNEKEEEEEYRAMRPAALDRVRPPPPPRIRPEVGKNRLPFGVSWIPQGL
SAALLMGTFVLGVGTGVTVDSAINTNPKDLASRDAIDKNAPNPKFCQVSC
ALLVSLEPPSRLSCSLVAPFISSGHTLLTSFTQRYGASTLVLDNRIFVSF
NPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAY
VGDINDKPQLSCVYQSDDAQNEFLENPKLGVGEDVYDK*
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mRNA from alignment at chr14:503725..507090+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01600.2 ID=NO14G01600.2|Name=NO14G01600.2|organism=Nannochloropsis oceanica|type=mRNA|length=3366bp|location=Sequence derived from alignment at chr14:503725..507090+ (Nannochloropsis oceanica)
ACGACTATTATATTTTTTGCTTCTTTTGGGGTTTTCCTTTTTTCTGACTG
GGGGATATACAAATTAACAAGCGTACATGAAAGTGGCGACGTATTCGCAT
ATACATTCACATGCTTCTCTTCCTCCTTCGTATTCATTCTTTTGCTTTGT
AAATGCTGCTCACCTTGGCGCTCGATGACCTGGCTTGGGTGAGGCGGCTC
TCTTGGCCACACTCGCTTTTTTGGGCTTGACAACACCCCCATTCGTGGCC
TTTCCCCCACCGGCCTCGTCTGTCCTTTCCTGTGCTGCATGACGACGAGT
GGCGCTGGCCGGCGTGTCCTTGCCACCCCGTACGGTTGTCATCAGCGTCT
CCACTGCCCCTGTTCCTGTCATGCATTCATCAAGCTCGACCCCGTTAAGC
AGCTTGCTGGGTGGGATCCCTGACCCTAGCGCGGGAGAAGGTGTCCTCTC
GGCAACATCCCTTTGTCGGACAGCAGCAGTGGCGGCCCGGACAAGGGTGT
AGGTCCCAAGGCCTACAACTACCATGGCTAGAAGTTTGCAGGTAACAGAA
AGATCGCCTTGCTTGCCAAAGGGCCACGCCAAGCCCCAAAGATCCCGCCG
CCCGCGCCCTCCGCTTGGCAAGGTGCCGCTGAGAGGCCGGGTGTCAGGGG
AAGCGTCCGTAGGCAAGGGCGCGAACGTAATGGGCTCGAGGCGCCCAAAG
AAGGCGCGGAGGTTGAGACCAGGCCCTGGGTGACAACGCATGTCGATGGC
TTCCACCAGGTGGCTGCGAATTCCGCCATCCACCATCGCCCGGCGAGGAG
GGTCTTGTTCAAACATGAAGAAGAAGGTGGGGATCAAGCTGCCCTCCGCC
CTCAATGAAGAACCCGAATCCATGGCAAGCATTAAGTTGTTCAGGTGCAT
GAGATTGCCGCACTCCACCTTCTCCATGTGCTTCACAATCACCACCAACT
CCCCGTCTACGCCCACCGCCTGGGACGCCTGGACCAAAGCATCACGCACA
CCGCCCGTCGATGTCACCCAGTCACCTGGCTTTGCGAGTTGAGCCGCGTT
CCATTGCATGCAGCCCCGACCGTCTGCCAGCACTTCAAGGACCGCTCTTG
CCGCAGTCCGGGCCTGCGCCCCGATGAGAGCTAGCTTGGTTACTTTGTCT
CCAGAGTATAACCCGTCGCTCAGCGCATTGACCAGCTGTTGAATGGCCCG
AGCTTGGCTCACAACCACCAGGCTCTCGGCTGTGTATTCAGTGGTGTATA
GAGACATGACGGCATGGTGTTGGGAGAGGCGTGGAGTAGAAAAGACAACA
TATTGTAGGTGTGAGCATGACCGGGCTGGTATGAGAGGTACATGTATATG
AATGGGAAACTTGGAAAGGAGAGGTTAAGAAACTCCACACTTACTCAAGC
GGTCCTTCATCGTCGCTTCATCCCGAGAGGCCGGCACAATCTGCAGCAAC
ACCATCAGCAGGACATATCCCAGGAGCTGGCGCGGCACGCTCCAAATATG
GCGGTGGGCAGCCATCATGACGACACGTCCGGGTTGAGACGTGTTTGGAG
TGGGCGATCACGGGGACAAAAGCGCAACGCAGCCTTTCGAAAGCTTTTCT
GTGCAGTTGTGGGAAGAAGACAAGGGGTTATGGCATGTGATGTTTAGTTG
TGGTTGCTGGCTGCCTAAACCAGCCTCGAGTGCCAAGGTCCTGGGCCCAC
GGACTTCTCGGACTACTGCATAGCTTCGTAACTTGGGCGAGAGCTTCCGC
GAAGGCCACCGCTCTGCCGCACTGGCTCACTATGCCTAATAAAGACCTTT
TATCCCTAATCATACCCAACAGGACAGGAAGACCCCACGAAGGACTCACC
GGCTGTGCTGGAAAGCTGCAGTCTCCAGCAAGCGCGTAACTAGCCAAGCT
TACTCAAGGTCTTGCTTCGCTCATTCATGGAGCCTCAGCCCACTATCTCT
CGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGGCTGGCTCT
GCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTTC
CCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGCTTGGTCTC
CGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGGAGGAGGCT
AGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAAACGCCGTC
GTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGGAAGAGGAA
GAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTACGCCCTCC
ACCCCCGCCCCGGATCCGCCCAGGTAATTAATTAAGTGCAAGACTATTTA
GGCGGGAGCGGATGCGCGGGTGTGGCTTGTGGGTACCAAACTGATAGTAA
CACTACAAGAGGGAGGCCGAATTCATGTGCCCAGCATCTCACCGCCACTA
CCACAAAACACACACGCGATAGAGGTGGGCAAGAACCGGCTACCATTTGG
CGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCATGGGCACAT
TTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCATCAACACC
AACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAACGCCCCTAA
TCCCAAATTCTGCCAGGTGAGTTGCGCGTTGCTCGTCAGTCTTGAACCAC
CCTCTCGCCTGTCTTGTTCACTTGTCGCCCCATTCATCTCCTCGGGTCAT
ACCCTCCTTACCTCCTTCACCCAGCGCTACGGTGCCAGCACATTAGTGCT
GGACAACCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTACGTAACGC
AGGCTGACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATGTGGTACAG
GCCCTGCAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAGGGCTTAAAG
AGAAGAAAAAGAAAAGAGGAAGCGAAGTGGGAGAAGCTGGGAGACGTAAG
GGGAGTGCGGCTGCTTAGGGTCTACAAAGCAGTAAATCTCACCGAGTTTT
CCTCCTCCTTTTTGCTTCACAGGTGAATGTCTGTAAGAACGGCAATAATA
CCTGGGCGTACGTTGGTGACATCAATGACAAGCCCCAGCTCTCCTGTGTG
TACCAATCCGACGACGCACAGAATGAGTTTTTGGAGAACCCCAAGCTGGG
CGTAGGAGAAGATGTGTACGACAAATAGACAATGAAAGTGGAAAAAAAAT
TAAATCCTTGCTGTAAATACTGGTGAAGAAAGACTCATGAAGGGTTAGAA
GCGTGCGTGATCCCCGCTCAGTAAAAATGTTGAAAAACGAAGAAGTAACA
GTAACATTGCGAAAAG
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Coding sequence (CDS) from alignment at chr14:503725..507090+

>NO14G01600.2 ID=NO14G01600.2|Name=NO14G01600.2|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr14:503725..507090+ (Nannochloropsis oceanica)
ATGGAGCCTCAGCCCACTATCTCTCGGTCCACGCGTCGCAAGACAATTGC
CCCTCTTCCCTGTGGGCTGGCTCTGCTCTTCATCGTTTGTGGCTGTTGCT
TGCCCCTTAGTCAGGCCTTCCTTCCCCCACATTTCAGCCAGGCGGGCAGC
CGGACTCTATCCTTGCTTGGTCTCCGCCAACCCTCCTCATCACGCTCGTC
GTCACTACGACTGGGGAGGAGGCTAGGTATTCCCCTGTACAGCATGTTGG
ACAAGGAGGGGAACAAACGCCGTCGTCGACGACGCCAAGGCAACGGGAAT
GAGAGCAATGAAAAGGAAGAGGAAGAGGAGTATCGAGCCATGAGACCAGC
AGCCCTGGACCGGGTACGCCCTCCACCCCCGCCCCGGATCCGCCCAGAGG
TGGGCAAGAACCGGCTACCATTTGGCGTCTCATGGATCCCCCAGGGCCTA
AGTGCGGCCCTACTCATGGGCACATTTGTTTTGGGTGTGGGTACGGGTGT
GACAGTGGACTCGGCCATCAACACCAACCCCAAGGACCTGGCATCTCGCG
ATGCCATAGATAAGAACGCCCCTAATCCCAAATTCTGCCAGGTGAGTTGC
GCGTTGCTCGTCAGTCTTGAACCACCCTCTCGCCTGTCTTGTTCACTTGT
CGCCCCATTCATCTCCTCGGGTCATACCCTCCTTACCTCCTTCACCCAGC
GCTACGGTGCCAGCACATTAGTGCTGGACAACCGCATCTTCGTCTCCTTC
AACCCTTTCGACGTTTACGTAACGCAGGCTGACGTCAAGCCCGGCTGCGT
ATTGCGTGCCGCAAATGTGGTACAGGCCCTGCAAGGCCGGGGGCTCCTCA
CGGACGAAGAGGTGAATGTCTGTAAGAACGGCAATAATACCTGGGCGTAC
GTTGGTGACATCAATGACAAGCCCCAGCTCTCCTGTGTGTACCAATCCGA
CGACGCACAGAATGAGTTTTTGGAGAACCCCAAGCTGGGCGTAGGAGAAG
ATGTGTACGACAAATAG
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Synonyms
Publications