NO14G01410.1, NO14G01410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G01410.1
Unique Name	NO14G01410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	849
Alignment location	chr14:450255..451103 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:450255..451103 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO14G01410.1 vs.

BLAST of NO14G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G01410	NO14G01410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01410.1	NO14G01410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01410.1.cds1	NO14G01410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:450255..451103-
coding sequence from alignment at chr14:450255..451103-

mRNA sequence

>NO14G01410.1 ID=NO14G01410.1|Name=NO14G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGGTGGAAGATCTGGTGGATGCGTATGAGGCTGATGCGGTTGATGCTCT
GCTGGCTAGCAGTGGGGGAGGGATCACAAGGACGACTCGCTCTCGGAGTG
CTGGCAGTGGCAGTGGTGGACGAGGAGGGGGCGGGAGAAGAGGAGAGGAG
GGAGGGGTGGGGACAGGCACAGATGACACGGGAGGGGAGATGGACGATGA
TGATGATGATGACGAGGAGGAGGATGATGAGGAGTATCAGGACGAGGATG
ATGATGAGGAGGAAGAAGATGAAGACGGTGATGAGGAAGGGGACCCAGAC
ATGGAGGCGGCGGAGGCATTATTGGCGAGTGTGAGGGGGCCGGGGCCGAT
GGCGATGAGAGCGGAATCGGAGGAGGGGTATGGGGGAGATGAGATCTCGT
CGCAGAAATCGGTCTCGGTGGAGGAGATGGAAGGAGAAGGAGGAGGAGGA
AGGGGAGGAGCTGGAGGGGGAGGAAGAGGAGGTAGTACTCGCGGGAGTAG
AAGGCGGACTGCGCCACCCTCGACCTCGTCTTCGGATAATGGTGGTTGCT
CGGGAGGGGGTGGGGGAAAGAGGGGAGGAGGGGCGGCGGGCAAGCTTCGA
GCGGCAGCAGCGGCATCGGGCAGAAGAAAATCATCGGGGCGGGCGCTGAT
GGAAGAGGAGGAGGAAAGCGATGAGGGGGCTTCTGTGACGTCTTGTCAGT
CAGGAGGGATTAATAACAAGAGAAGTGTCGAGAATATTTTGTCTCTGCCA
TCCGCGGCGCCGATGGAGGGAGAGGATGGGGGAGGAGGGGAAGAGGCGGC
AGTCAAAGGCAAGGGAAGTGCAGCGAAGGCCAAGAGAAGAAAACGCTGA

protein sequence of NO14G01410.1

>NO14G01410.1-protein ID=NO14G01410.1-protein|Name=NO14G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MVEDLVDAYEADAVDALLASSGGGITRTTRSRSAGSGSGGRGGGGRRGEE
GGVGTGTDDTGGEMDDDDDDDEEEDDEEYQDEDDDEEEEDEDGDEEGDPD
MEAAEALLASVRGPGPMAMRAESEEGYGGDEISSQKSVSVEEMEGEGGGG
RGGAGGGGRGGSTRGSRRRTAPPSTSSSDNGGCSGGGGGKRGGGAAGKLR
AAAAASGRRKSSGRALMEEEEESDEGASVTSCQSGGINNKRSVENILSLP
SAAPMEGEDGGGGEEAAVKGKGSAAKAKRRKR*

mRNA from alignment at chr14:450255..451103-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G01410.1 ID=NO14G01410.1|Name=NO14G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at chr14:450255..451103- (Nannochloropsis oceanica)
ATGGTGGAAGATCTGGTGGATGCGTATGAGGCTGATGCGGTTGATGCTCT
GCTGGCTAGCAGTGGGGGAGGGATCACAAGGACGACTCGCTCTCGGAGTG
CTGGCAGTGGCAGTGGTGGACGAGGAGGGGGCGGGAGAAGAGGAGAGGAG
GGAGGGGTGGGGACAGGCACAGATGACACGGGAGGGGAGATGGACGATGA
TGATGATGATGACGAGGAGGAGGATGATGAGGAGTATCAGGACGAGGATG
ATGATGAGGAGGAAGAAGATGAAGACGGTGATGAGGAAGGGGACCCAGAC
ATGGAGGCGGCGGAGGCATTATTGGCGAGTGTGAGGGGGCCGGGGCCGAT
GGCGATGAGAGCGGAATCGGAGGAGGGGTATGGGGGAGATGAGATCTCGT
CGCAGAAATCGGTCTCGGTGGAGGAGATGGAAGGAGAAGGAGGAGGAGGA
AGGGGAGGAGCTGGAGGGGGAGGAAGAGGAGGTAGTACTCGCGGGAGTAG
AAGGCGGACTGCGCCACCCTCGACCTCGTCTTCGGATAATGGTGGTTGCT
CGGGAGGGGGTGGGGGAAAGAGGGGAGGAGGGGCGGCGGGCAAGCTTCGA
GCGGCAGCAGCGGCATCGGGCAGAAGAAAATCATCGGGGCGGGCGCTGAT
GGAAGAGGAGGAGGAAAGCGATGAGGGGGCTTCTGTGACGTCTTGTCAGT
CAGGAGGGATTAATAACAAGAGAAGTGTCGAGAATATTTTGTCTCTGCCA
TCCGCGGCGCCGATGGAGGGAGAGGATGGGGGAGGAGGGGAAGAGGCGGC
AGTCAAAGGCAAGGGAAGTGCAGCGAAGGCCAAGAGAAGAAAACGCTGA

Coding sequence (CDS) from alignment at chr14:450255..451103-

>NO14G01410.1 ID=NO14G01410.1|Name=NO14G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr14:450255..451103- (Nannochloropsis oceanica)
ATGGTGGAAGATCTGGTGGATGCGTATGAGGCTGATGCGGTTGATGCTCT
GCTGGCTAGCAGTGGGGGAGGGATCACAAGGACGACTCGCTCTCGGAGTG
CTGGCAGTGGCAGTGGTGGACGAGGAGGGGGCGGGAGAAGAGGAGAGGAG
GGAGGGGTGGGGACAGGCACAGATGACACGGGAGGGGAGATGGACGATGA
TGATGATGATGACGAGGAGGAGGATGATGAGGAGTATCAGGACGAGGATG
ATGATGAGGAGGAAGAAGATGAAGACGGTGATGAGGAAGGGGACCCAGAC
ATGGAGGCGGCGGAGGCATTATTGGCGAGTGTGAGGGGGCCGGGGCCGAT
GGCGATGAGAGCGGAATCGGAGGAGGGGTATGGGGGAGATGAGATCTCGT
CGCAGAAATCGGTCTCGGTGGAGGAGATGGAAGGAGAAGGAGGAGGAGGA
AGGGGAGGAGCTGGAGGGGGAGGAAGAGGAGGTAGTACTCGCGGGAGTAG
AAGGCGGACTGCGCCACCCTCGACCTCGTCTTCGGATAATGGTGGTTGCT
CGGGAGGGGGTGGGGGAAAGAGGGGAGGAGGGGCGGCGGGCAAGCTTCGA
GCGGCAGCAGCGGCATCGGGCAGAAGAAAATCATCGGGGCGGGCGCTGAT
GGAAGAGGAGGAGGAAAGCGATGAGGGGGCTTCTGTGACGTCTTGTCAGT
CAGGAGGGATTAATAACAAGAGAAGTGTCGAGAATATTTTGTCTCTGCCA
TCCGCGGCGCCGATGGAGGGAGAGGATGGGGGAGGAGGGGAAGAGGCGGC
AGTCAAAGGCAAGGGAAGTGCAGCGAAGGCCAAGAGAAGAAAACGCTGA

Synonyms

Publications