NO14G01150.1, NO14G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01150.1
Unique NameNO14G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length333
Alignment locationchr14:380427..380759 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:380427..380759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01150.1 vs.
Match: EWM24701.1 (adenylyl cyclase-associated protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 173.3 bits (438), Expect = 4.100e-40
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0 
Query:    1 MDGCKKTQVVVDEMLSSLEVVNCQGVKVQVRQHVPTVAIDKTDGIIVVLSKDGLGTSFLTSKSSEMNIQYPKNEEGELVETPIPEQWQHSLEGEWPKLKVKNEV 105
            +D C+KTQVVVDE+LSSLEVVNC+GV ++VRQ VPTVAIDKTDG++VVL K  LG SFLTSKSSEMN+QYPKN +GEL E PIPEQWQHSLEG+WP L+VKNEV
Sbjct:  392 VDSCRKTQVVVDELLSSLEVVNCKGVTIRVRQQVPTVAIDKTDGVLVVLPKSSLGASFLTSKSSEMNVQYPKNNDGELTEIPIPEQWQHSLEGDWPNLRVKNEV 495
The following BLAST results are available for this feature:
BLAST of NO14G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24701.14.100e-4077.88adenylyl cyclase-associated protein 1 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01150NO14G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01150.1NO14G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01150.1.cds1NO14G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01150.1 ID=NO14G01150.1|Name=NO14G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGGACGGATGCAAGAAGACTCAGGTTGTGGTCGACGAGATGCTTTCCTC
GTTAGAAGTGGTGAACTGCCAGGGGGTGAAGGTTCAGGTTCGACAACACG
TCCCTACCGTGGCCATTGACAAAACTGATGGGATAATCGTGGTGCTGAGC
AAGGACGGGTTGGGCACAAGTTTCCTCACTAGCAAGAGCAGCGAGATGAA
TATTCAATACCCCAAGAATGAAGAGGGGGAGCTGGTTGAGACGCCCATTC
CCGAGCAGTGGCAGCATTCGCTGGAGGGGGAGTGGCCCAAATTGAAAGTG
AAGAATGAGGTGTCGTCGTTGTACACGCACTAG
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protein sequence of NO14G01150.1

>NO14G01150.1-protein ID=NO14G01150.1-protein|Name=NO14G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MDGCKKTQVVVDEMLSSLEVVNCQGVKVQVRQHVPTVAIDKTDGIIVVLS
KDGLGTSFLTSKSSEMNIQYPKNEEGELVETPIPEQWQHSLEGEWPKLKV
KNEVSSLYTH*
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mRNA from alignment at chr14:380427..380759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01150.1 ID=NO14G01150.1|Name=NO14G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp|location=Sequence derived from alignment at chr14:380427..380759+ (Nannochloropsis oceanica)
ATGGACGGATGCAAGAAGACTCAGGTTGTGGTCGACGAGATGCTTTCCTC
GTTAGAAGTGGTGAACTGCCAGGGGGTGAAGGTTCAGGTTCGACAACACG
TCCCTACCGTGGCCATTGACAAAACTGATGGGATAATCGTGGTGCTGAGC
AAGGACGGGTTGGGCACAAGTTTCCTCACTAGCAAGAGCAGCGAGATGAA
TATTCAATACCCCAAGAATGAAGAGGGGGAGCTGGTTGAGACGCCCATTC
CCGAGCAGTGGCAGCATTCGCTGGAGGGGGAGTGGCCCAAATTGAAAGTG
AAGAATGAGGTGTCGTCGTTGTACACGCACTAG
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Coding sequence (CDS) from alignment at chr14:380427..380759+

>NO14G01150.1 ID=NO14G01150.1|Name=NO14G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at chr14:380427..380759+ (Nannochloropsis oceanica)
ATGGACGGATGCAAGAAGACTCAGGTTGTGGTCGACGAGATGCTTTCCTC
GTTAGAAGTGGTGAACTGCCAGGGGGTGAAGGTTCAGGTTCGACAACACG
TCCCTACCGTGGCCATTGACAAAACTGATGGGATAATCGTGGTGCTGAGC
AAGGACGGGTTGGGCACAAGTTTCCTCACTAGCAAGAGCAGCGAGATGAA
TATTCAATACCCCAAGAATGAAGAGGGGGAGCTGGTTGAGACGCCCATTC
CCGAGCAGTGGCAGCATTCGCTGGAGGGGGAGTGGCCCAAATTGAAAGTG
AAGAATGAGGTGTCGTCGTTGTACACGCACTAG
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Synonyms
Publications