NO14G01010.1, NO14G01010.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G01010.1
Unique Name	NO14G01010.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	777
Alignment location	chr14:337752..338741 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:337752..338741 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO14G01010.1 vs.

BLAST of NO14G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G01010	NO14G01010	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01010.1	NO14G01010.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01010.1.cds1	NO14G01010.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G01010.1.cds2	NO14G01010.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:337752..338741-
coding sequence from alignment at chr14:337752..338741-

mRNA sequence

>NO14G01010.1 ID=NO14G01010.1|Name=NO14G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
ATGGCTTTTCTGCTCAGTAGTCCTGAGAATGCCAAGGCTACAAACCCTTA
CGACTTCGACATTAGCTCGGACGACGAGGGCGACGACGACGACCAGGACA
TAATCTTCGCAGGTGGCATTAATTGCAAGACATCCAGCGTCTCTAATGCT
CTTTTGCAGTCGCCTTTAGCAGGAGCCTATGTCAAGAAGAAGCCGGGTCC
TATCTCAATTGCCAGTAGCAGTAGTAGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGTGTGACCAGCGACAGCAGCAGGAATGCCGGGGT
TTTGGCAAAGGGGGACGAGGACGAAGATAACGAGGGTGAGAACGAGGATA
ATGAGGAGAAAGACAAGGATGAAGACAGCAACGCTTCGACCCGATTAGAC
CATCTCAACAGTAACAAAGAACAACAGCAGCGGGATAACAACGATATATC
TCGGCGATGTTTGACCATTGACGACTTGGGCGCCGTCCTTGTGTTAGCAG
ACGGTCACCCAGAGGAGGAAGCACAAGCAGTCGCGGGATTTGCAGTCACA
GTCTGTCCAACACTGCTGAATTTCCCATCATCCACCAGCAATTTGAAAGA
AGCAAGTCGACGGGAAATTTGGCTGGCGTACCTGGCTTTGTTGGAAGAGC
AGCAAGCCCATTTTGTACGCACACGCCAAGAGATGATGACCCTTATACGG
CAAGCCCGTCGCACAAGGGAGAAGTAG

protein sequence of NO14G01010.1

>NO14G01010.1-protein ID=NO14G01010.1-protein|Name=NO14G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MAFLLSSPENAKATNPYDFDISSDDEGDDDDQDIIFAGGINCKTSSVSNA
LLQSPLAGAYVKKKPGPISIASSSSSSGSSSSSSSSSSSSSSSSSSSSSS
SSSGSSVTSDSSRNAGVLAKGDEDEDNEGENEDNEEKDKDEDSNASTRLD
HLNSNKEQQQRDNNDISRRCLTIDDLGAVLVLADGHPEEEAQAVAGFAVT
VCPTLLNFPSSTSNLKEASRREIWLAYLALLEEQQAHFVRTRQEMMTLIR
QARRTREK*

mRNA from alignment at chr14:337752..338741-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G01010.1 ID=NO14G01010.1|Name=NO14G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=990bp|location=Sequence derived from alignment at chr14:337752..338741- (Nannochloropsis oceanica)
ATGGCTTTTCTGCTCAGTAGTCCTGAGAATGCCAAGGCTACAAACCCTTA
CGACTTCGACATTAGCTCGGACGACGAGGGCGACGACGACGACCAGGACA
TAATCTTCGCAGGTGGCATTAATTGCAAGACATCCAGCGTCTCTAATGCT
CTTTTGCAGTCGCCTTTAGCAGGAGCCTATGTCAAGAAGAAGCCGGGTCC
TATCTCAATTGCCAGTAGCAGTAGTAGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGTGTGACCAGCGACAGCAGCAGGAATGCCGGGGT
TTTGGCAAAGGGGGACGAGGACGAAGATAACGAGGGTGAGAACGAGGATA
ATGAGGAGAAAGACAAGGATGAAGACAGCAACGCTTCGACCCGATTAGAC
CATCTCAACAGTAACAAAGAACAACAGCAGCGGGATAACAACGATATATC
TCGGCGATGTTTGACCATTGACGACTTGGGCGCCGTCCTTGTGTTAGCAG
ACGGTCACCCAGAGGAGGAAGCACAAGCAGTCGCGGGATTTGCAGTCACA
GGTACATCACCTTCAACTCCGTCATCGCTGTCTAAAATAATTTCCTCCTC
ATTGGCTGCATCATCAACCACTCGAGTCGTAGAAATGAGTGACCAAGGCA
CGCAATTTACTTCTCGAATCGTACAAACGAGTGACCAAAGCACGCAATGC
CAGCTCACAGACATCGACGCCGCAGCGCAAACGGGACAAGAAATACTCCC
TCCACCATACTTAGTCTGTCCAACACTGCTGAATTTCCCATCATCCACCA
GCAATTTGAAAGAAGCAAGTCGACGGGAAATTTGGCTGGCGTACCTGGCT
TTGTTGGAAGAGCAGCAAGCCCATTTTGTACGCACACGCCAAGAGATGAT
GACCCTTATACGGCAAGCCCGTCGCACAAGGGAGAAGTAG

Coding sequence (CDS) from alignment at chr14:337752..338741-

>NO14G01010.1 ID=NO14G01010.1|Name=NO14G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr14:337752..338741- (Nannochloropsis oceanica)
ATGGCTTTTCTGCTCAGTAGTCCTGAGAATGCCAAGGCTACAAACCCTTA
CGACTTCGACATTAGCTCGGACGACGAGGGCGACGACGACGACCAGGACA
TAATCTTCGCAGGTGGCATTAATTGCAAGACATCCAGCGTCTCTAATGCT
CTTTTGCAGTCGCCTTTAGCAGGAGCCTATGTCAAGAAGAAGCCGGGTCC
TATCTCAATTGCCAGTAGCAGTAGTAGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGTGTGACCAGCGACAGCAGCAGGAATGCCGGGGT
TTTGGCAAAGGGGGACGAGGACGAAGATAACGAGGGTGAGAACGAGGATA
ATGAGGAGAAAGACAAGGATGAAGACAGCAACGCTTCGACCCGATTAGAC
CATCTCAACAGTAACAAAGAACAACAGCAGCGGGATAACAACGATATATC
TCGGCGATGTTTGACCATTGACGACTTGGGCGCCGTCCTTGTGTTAGCAG
ACGGTCACCCAGAGGAGGAAGCACAAGCAGTCGCGGGATTTGCAGTCACA
GTCTGTCCAACACTGCTGAATTTCCCATCATCCACCAGCAATTTGAAAGA
AGCAAGTCGACGGGAAATTTGGCTGGCGTACCTGGCTTTGTTGGAAGAGC
AGCAAGCCCATTTTGTACGCACACGCCAAGAGATGATGACCCTTATACGG
CAAGCCCGTCGCACAAGGGAGAAGTAG

Synonyms

Publications