NO14G00780.1, NO14G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00780.1
Unique NameNO14G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2626
Alignment locationchr14:277066..279929 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:277066..279929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00780.1 vs.
Match: EWM24726.1 (splicing factor 4 [Nannochloropsis gaditana])

HSP 1 Score: 298.9 bits (764), Expect = 4.500e-77
Identity = 176/312 (56.41%), Postives = 219/312 (70.19%), Query Frame = 0 
Query:  470 TSTQQRKPKRNRWGPSPG--ETSTPSLPPVLPPSLLAIAAAANDEDTPKEKGKKGKGGKQSLDVFLPSVMDAAAMAQLKEQKRIQLIEKKIREAARLKSLGKEGGREGGGEMELFEERMLHYEGLAEKEASAAAE-------VAEEEEGEGG----GTWEHKKRAREMLKTAQDALNLTLASRGKHHLSQFLPSPGDLDGYLSKKGEGGGE------DYEGNKLDVGNSTGMQMLQKQGWKEGQGLGKEGRKGVVAPVNMKGTEGEGLGVGG---EEEEEEKGDDFDEYRKRMMLAYRFRPNPLNNPRREYY 760
            T+   +KPKRNRWGP  G   ++ PS PP LPPSL            P  + K GK  K +LD +LP+VMDAAAM QL+EQKRIQ +EKKIREAARLK+L  EGG+EGG E+ELF+ER L+YE LAEKE    +E        AE     GG    GTWEH+KRA+EML+TA+DAL++TLAS+G+HH++Q+LP+ G+++  L   G+GG        D+  N+L+   + GMQ+L+KQGW EGQGLG EG+ GV APVNM+ T GEG+GVGG   EE  EE GDDF+ YR+RMMLAYRFRPNPLNNPRR YY
Sbjct:  232 TAAVAKKPKRNRWGPESGVPPSAPPSAPPSLPPSL-----------PPSTRKKDGK--KNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALA-EGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPA-GEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528
The following BLAST results are available for this feature:
BLAST of NO14G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24726.14.500e-7756.41splicing factor 4 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00780NO14G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00780.1NO14G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00780.1.cds1NO14G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00780.1.cds2NO14G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00780.1 ID=NO14G00780.1|Name=NO14G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp
ATGTACGGTCAAGGACCTGGTCATGGAGGAGAGCCGCCCCCGTACTACCA
CCACCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGC
AGCAAGTTCCGCAGGGCAATGTCAACTACCCTCCTCCTCATCATCAAGGC
TACCCACCAAACGGCTCAAACCCGCCTCCTGGCTACCAGCATTATCATCC
TCCGCCGCCGCCTCCTTTCGCGCACCTCTACCCTCCGCAGCAGCAGCACT
ACCGTCCTCATCCCCCACCAACACCACCACCACATCACCAGCAACAGCAG
TCTCAACAAGAAGAATATGATCCTTTCGCTGCTCTACCTCCCCCGCCTCC
TCCGCTCCCCTACCAACAGCATCAACAGCAAAAAGCTCCTCCTCCTCCTC
CACCACCACCACCACCACCCTCCTCCGCCCTTCAGACTACGGTCCCTCCC
CTCCCTCCTCCGTCCTCCACACCCACCAACATTTATGCCAAAGCCGAAGG
TTCATTCATCGAAAATTTTAACAAGATCAAGGAGGAAAAAGAAAGAGAAA
AGGAGAAGGAAGACAAGGAATTAAGAGAAATGGAGGCCGCGCTCCAGAAA
GAGAGGGAGGCACATGCACGACGCATGGCCCAGGAAAATCAGCAACAGCA
ACAGCGAAAGAAGAAGCTGTTGATGTCAGGTGGAGGAGGAGGTGGGGCCG
GGTTGAGGAGGAAGGGAGGAGCAGGAGGAGGGTCAATGGCGGCTGTGTTT
GCAACTGTAGAGGAGGACCAAGGGGATGAGGATGGGAAGGAACAACAACA
ACAACAGCAGCAGGAGCAGCAGCGGAAACGCTCTCGATGGGACACTCAAA
AAGGAGGGGGTCAAAAAAAGGATGATATTGGGGATGAAGAAGGGAAGGAG
GAAGGGCCACTGAGCGAGGCTGTGCAGGCCACGATAAGACAGGCTGCAGA
ATGGATTATTACAAACCCACAACGAGAGAAAGAATTGCTGGTGCAGAGCA
AAGGGAAGAAGGGGTGGGGATTTTTGTTCGAAGACGAGGAGGAAGGGGAA
GCGGGGGAGGGGCTAGGGAGGAGGAAGAGGGCGAGGAGGGAGAGGGAGTT
TTTCTTGGAGGTGCTGGAGGAGGGGAGGGTGAAGGAGCAAGTGAAGAGGG
TGGCGTTAGGTTTAGACGAGGTAGGAGGGGGGGGAGGAGGAGGAGGCGGC
GGAGGAGAAGGAGGAGGAGGAGGGCAGATGGCTGCTGCTGCTGCTGCTGC
TGCTAGTGTTGCAGCACTTTCGAGGATGAATCTACCTGCCTCGACGGTCC
CGCGCCTGTCCTTTTCTTCCGCTGCTACAGCTGCGGCTGCTGCTACTGCC
ACGGCTGCTGCCGGTCCTCCGCCTACTAGTGCTGCTGCTTCTGCTTCTGC
TTCCCCTACCTCCACGCAACAGCGAAAGCCCAAACGCAACCGTTGGGGTC
CGTCTCCCGGCGAAACTAGCACTCCCTCCCTCCCCCCCGTCCTCCCTCCC
TCCCTCCTGGCTATAGCCGCCGCCGCCAACGATGAAGACACGCCGAAAGA
GAAAGGGAAGAAAGGAAAAGGAGGAAAGCAGAGCCTCGACGTCTTCTTAC
CCTCGGTGATGGATGCGGCAGCCATGGCTCAGTTGAAGGAACAAAAGAGA
ATCCAATTGATTGAAAAGAAGATACGGGAGGCGGCCCGACTGAAGTCTTT
AGGGAAAGAGGGAGGGAGGGAGGGAGGGGGGGAGATGGAGTTGTTCGAGG
AGCGGATGTTGCATTATGAGGGCCTGGCGGAGAAGGAGGCTTCAGCAGCA
GCTGAAGTAGCCGAAGAGGAGGAGGGTGAAGGAGGGGGCACGTGGGAGCA
TAAAAAGAGGGCTAGGGAGATGCTCAAGACGGCACAGGATGCCCTTAATC
TCACATTGGCATCCAGGGGGAAGCACCACCTGAGCCAGTTCCTCCCTTCT
CCCGGCGATCTCGACGGATATCTGTCCAAGAAGGGGGAGGGCGGGGGGGA
GGACTACGAAGGGAATAAATTGGATGTTGGAAATAGCACCGGTATGCAGA
TGTTGCAAAAACAAGGCTGGAAGGAGGGGCAGGGACTAGGGAAGGAGGGG
AGAAAGGGGGTGGTGGCACCAGTGAATATGAAGGGGACTGAAGGGGAGGG
GCTGGGGGTGGGAGGGGAGGAAGAGGAGGAGGAAAAAGGAGATGATTTTG
ATGAGTATAGGAAAAGGATGATGCTTGCGTATCGATTTCGGCCGAATCCG
TTGAATAATCCTCGGAGGGAGTATTACTAGGATTAAGGTCTGGGCTACTC
AAATTACGCGGGGGGATCAGTATCCTCGGAGGAGATACTACTAGCTTCAT
CTTCGTTGGCGAATAAAGTGGATGGAAGTACGACAACAACCACGCGCTTT
CACCGACCTGTGACAAGAGTCAGCTAAGACCGTGGAGGGAGAAGTGTGGC
AAAGCTATCAAGTGAGAGGAAAGTTAGAAGTATGGGCCAAGAGAACGGCG
AGACACTGGAAAATAGAAGGCCCAGACTTGAGTCATGAAAATTAGAATAG
AAGTGGAAATGAACAATTGACATCTAGCACGATGACCGCAGGCTCATGCT
GAGTGAATAAAGTGTGTAATCCCGGG
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protein sequence of NO14G00780.1

>NO14G00780.1-protein ID=NO14G00780.1-protein|Name=NO14G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MYGQGPGHGGEPPPYYHHQQQQQQQQQQQQQQQQQVPQGNVNYPPPHHQG
YPPNGSNPPPGYQHYHPPPPPPFAHLYPPQQQHYRPHPPPTPPPHHQQQQ
SQQEEYDPFAALPPPPPPLPYQQHQQQKAPPPPPPPPPPPSSALQTTVPP
LPPPSSTPTNIYAKAEGSFIENFNKIKEEKEREKEKEDKELREMEAALQK
EREAHARRMAQENQQQQQRKKKLLMSGGGGGGAGLRRKGGAGGGSMAAVF
ATVEEDQGDEDGKEQQQQQQQEQQRKRSRWDTQKGGGQKKDDIGDEEGKE
EGPLSEAVQATIRQAAEWIITNPQREKELLVQSKGKKGWGFLFEDEEEGE
AGEGLGRRKRARREREFFLEVLEEGRVKEQVKRVALGLDEVGGGGGGGGG
GGEGGGGGQMAAAAAAAASVAALSRMNLPASTVPRLSFSSAATAAAAATA
TAAAGPPPTSAAASASASPTSTQQRKPKRNRWGPSPGETSTPSLPPVLPP
SLLAIAAAANDEDTPKEKGKKGKGGKQSLDVFLPSVMDAAAMAQLKEQKR
IQLIEKKIREAARLKSLGKEGGREGGGEMELFEERMLHYEGLAEKEASAA
AEVAEEEEGEGGGTWEHKKRAREMLKTAQDALNLTLASRGKHHLSQFLPS
PGDLDGYLSKKGEGGGEDYEGNKLDVGNSTGMQMLQKQGWKEGQGLGKEG
RKGVVAPVNMKGTEGEGLGVGGEEEEEEKGDDFDEYRKRMMLAYRFRPNP
LNNPRREYY*
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mRNA from alignment at chr14:277066..279929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00780.1 ID=NO14G00780.1|Name=NO14G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp|location=Sequence derived from alignment at chr14:277066..279929+ (Nannochloropsis oceanica)
ATGTACGGTCAAGGACCTGGTCATGGAGGAGAGCCGCCCCCGTACTACCA
CCACCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGC
AGCAAGTTCCGCAGGGCAATGGTATATATCTCCCGAGTGCTCTTTTGTCC
CTTGCACACTCATCGCTAGCCCCCTAGTCCTCCGCTTTGTATACCTCCGT
CCCGCTATTCTCTCCTGTCTATTTGCTGCACGAGTGCCATCTTTTTGGAG
GACATACGACCCTCTCTCCCTTTGCACGTGCGTCTGACTAACGACATCGA
ACGCACTCATTTCTCATTCCCCACTGCCACACCCACACCACGCTCACATG
CATCTACAGTCAACTACCCTCCTCCTCATCATCAAGGCTACCCACCAAAC
GGCTCAAACCCGCCTCCTGGCTACCAGCATTATCATCCTCCGCCGCCGCC
TCCTTTCGCGCACCTCTACCCTCCGCAGCAGCAGCACTACCGTCCTCATC
CCCCACCAACACCACCACCACATCACCAGCAACAGCAGTCTCAACAAGAA
GAATATGATCCTTTCGCTGCTCTACCTCCCCCGCCTCCTCCGCTCCCCTA
CCAACAGCATCAACAGCAAAAAGCTCCTCCTCCTCCTCCACCACCACCAC
CACCACCCTCCTCCGCCCTTCAGACTACGGTCCCTCCCCTCCCTCCTCCG
TCCTCCACACCCACCAACATTTATGCCAAAGCCGAAGGTTCATTCATCGA
AAATTTTAACAAGATCAAGGAGGAAAAAGAAAGAGAAAAGGAGAAGGAAG
ACAAGGAATTAAGAGAAATGGAGGCCGCGCTCCAGAAAGAGAGGGAGGCA
CATGCACGACGCATGGCCCAGGAAAATCAGCAACAGCAACAGCGAAAGAA
GAAGCTGTTGATGTCAGGTGGAGGAGGAGGTGGGGCCGGGTTGAGGAGGA
AGGGAGGAGCAGGAGGAGGGTCAATGGCGGCTGTGTTTGCAACTGTAGAG
GAGGACCAAGGGGATGAGGATGGGAAGGAACAACAACAACAACAGCAGCA
GGAGCAGCAGCGGAAACGCTCTCGATGGGACACTCAAAAAGGAGGGGGTC
AAAAAAAGGATGATATTGGGGATGAAGAAGGGAAGGAGGAAGGGCCACTG
AGCGAGGCTGTGCAGGCCACGATAAGACAGGCTGCAGAATGGATTATTAC
AAACCCACAACGAGAGAAAGAATTGCTGGTGCAGAGCAAAGGGAAGAAGG
GGTGGGGATTTTTGTTCGAAGACGAGGAGGAAGGGGAAGCGGGGGAGGGG
CTAGGGAGGAGGAAGAGGGCGAGGAGGGAGAGGGAGTTTTTCTTGGAGGT
GCTGGAGGAGGGGAGGGTGAAGGAGCAAGTGAAGAGGGTGGCGTTAGGTT
TAGACGAGGTAGGAGGGGGGGGAGGAGGAGGAGGCGGCGGAGGAGAAGGA
GGAGGAGGAGGGCAGATGGCTGCTGCTGCTGCTGCTGCTGCTAGTGTTGC
AGCACTTTCGAGGATGAATCTACCTGCCTCGACGGTCCCGCGCCTGTCCT
TTTCTTCCGCTGCTACAGCTGCGGCTGCTGCTACTGCCACGGCTGCTGCC
GGTCCTCCGCCTACTAGTGCTGCTGCTTCTGCTTCTGCTTCCCCTACCTC
CACGCAACAGCGAAAGCCCAAACGCAACCGTTGGGGTCCGTCTCCCGGCG
AAACTAGCACTCCCTCCCTCCCCCCCGTCCTCCCTCCCTCCCTCCTGGCT
ATAGCCGCCGCCGCCAACGATGAAGACACGCCGAAAGAGAAAGGGAAGAA
AGGAAAAGGAGGAAAGCAGAGCCTCGACGTCTTCTTACCCTCGGTGATGG
ATGCGGCAGCCATGGCTCAGTTGAAGGAACAAAAGAGAATCCAATTGATT
GAAAAGAAGATACGGGAGGCGGCCCGACTGAAGTCTTTAGGGAAAGAGGG
AGGGAGGGAGGGAGGGGGGGAGATGGAGTTGTTCGAGGAGCGGATGTTGC
ATTATGAGGGCCTGGCGGAGAAGGAGGCTTCAGCAGCAGCTGAAGTAGCC
GAAGAGGAGGAGGGTGAAGGAGGGGGCACGTGGGAGCATAAAAAGAGGGC
TAGGGAGATGCTCAAGACGGCACAGGATGCCCTTAATCTCACATTGGCAT
CCAGGGGGAAGCACCACCTGAGCCAGTTCCTCCCTTCTCCCGGCGATCTC
GACGGATATCTGTCCAAGAAGGGGGAGGGCGGGGGGGAGGACTACGAAGG
GAATAAATTGGATGTTGGAAATAGCACCGGTATGCAGATGTTGCAAAAAC
AAGGCTGGAAGGAGGGGCAGGGACTAGGGAAGGAGGGGAGAAAGGGGGTG
GTGGCACCAGTGAATATGAAGGGGACTGAAGGGGAGGGGCTGGGGGTGGG
AGGGGAGGAAGAGGAGGAGGAAAAAGGAGATGATTTTGATGAGTATAGGA
AAAGGATGATGCTTGCGTATCGATTTCGGCCGAATCCGTTGAATAATCCT
CGGAGGGAGTATTACTAGGATTAAGGTCTGGGCTACTCAAATTACGCGGG
GGGATCAGTATCCTCGGAGGAGATACTACTAGCTTCATCTTCGTTGGCGA
ATAAAGTGGATGGAAGTACGACAACAACCACGCGCTTTCACCGACCTGTG
ACAAGAGTCAGCTAAGACCGTGGAGGGAGAAGTGTGGCAAAGCTATCAAG
TGAGAGGAAAGTTAGAAGTATGGGCCAAGAGAACGGCGAGACACTGGAAA
ATAGAAGGCCCAGACTTGAGTCATGAAAATTAGAATAGAAGTGGAAATGA
ACAATTGACATCTAGCACGATGACCGCAGGCTCATGCTGAGTGAATAAAG
TGTGTAATCCCGGG
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Coding sequence (CDS) from alignment at chr14:277066..279929+

>NO14G00780.1 ID=NO14G00780.1|Name=NO14G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at chr14:277066..279929+ (Nannochloropsis oceanica)
ATGTACGGTCAAGGACCTGGTCATGGAGGAGAGCCGCCCCCGTACTACCA
CCACCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGC
AGCAAGTTCCGCAGGGCAATGTCAACTACCCTCCTCCTCATCATCAAGGC
TACCCACCAAACGGCTCAAACCCGCCTCCTGGCTACCAGCATTATCATCC
TCCGCCGCCGCCTCCTTTCGCGCACCTCTACCCTCCGCAGCAGCAGCACT
ACCGTCCTCATCCCCCACCAACACCACCACCACATCACCAGCAACAGCAG
TCTCAACAAGAAGAATATGATCCTTTCGCTGCTCTACCTCCCCCGCCTCC
TCCGCTCCCCTACCAACAGCATCAACAGCAAAAAGCTCCTCCTCCTCCTC
CACCACCACCACCACCACCCTCCTCCGCCCTTCAGACTACGGTCCCTCCC
CTCCCTCCTCCGTCCTCCACACCCACCAACATTTATGCCAAAGCCGAAGG
TTCATTCATCGAAAATTTTAACAAGATCAAGGAGGAAAAAGAAAGAGAAA
AGGAGAAGGAAGACAAGGAATTAAGAGAAATGGAGGCCGCGCTCCAGAAA
GAGAGGGAGGCACATGCACGACGCATGGCCCAGGAAAATCAGCAACAGCA
ACAGCGAAAGAAGAAGCTGTTGATGTCAGGTGGAGGAGGAGGTGGGGCCG
GGTTGAGGAGGAAGGGAGGAGCAGGAGGAGGGTCAATGGCGGCTGTGTTT
GCAACTGTAGAGGAGGACCAAGGGGATGAGGATGGGAAGGAACAACAACA
ACAACAGCAGCAGGAGCAGCAGCGGAAACGCTCTCGATGGGACACTCAAA
AAGGAGGGGGTCAAAAAAAGGATGATATTGGGGATGAAGAAGGGAAGGAG
GAAGGGCCACTGAGCGAGGCTGTGCAGGCCACGATAAGACAGGCTGCAGA
ATGGATTATTACAAACCCACAACGAGAGAAAGAATTGCTGGTGCAGAGCA
AAGGGAAGAAGGGGTGGGGATTTTTGTTCGAAGACGAGGAGGAAGGGGAA
GCGGGGGAGGGGCTAGGGAGGAGGAAGAGGGCGAGGAGGGAGAGGGAGTT
TTTCTTGGAGGTGCTGGAGGAGGGGAGGGTGAAGGAGCAAGTGAAGAGGG
TGGCGTTAGGTTTAGACGAGGTAGGAGGGGGGGGAGGAGGAGGAGGCGGC
GGAGGAGAAGGAGGAGGAGGAGGGCAGATGGCTGCTGCTGCTGCTGCTGC
TGCTAGTGTTGCAGCACTTTCGAGGATGAATCTACCTGCCTCGACGGTCC
CGCGCCTGTCCTTTTCTTCCGCTGCTACAGCTGCGGCTGCTGCTACTGCC
ACGGCTGCTGCCGGTCCTCCGCCTACTAGTGCTGCTGCTTCTGCTTCTGC
TTCCCCTACCTCCACGCAACAGCGAAAGCCCAAACGCAACCGTTGGGGTC
CGTCTCCCGGCGAAACTAGCACTCCCTCCCTCCCCCCCGTCCTCCCTCCC
TCCCTCCTGGCTATAGCCGCCGCCGCCAACGATGAAGACACGCCGAAAGA
GAAAGGGAAGAAAGGAAAAGGAGGAAAGCAGAGCCTCGACGTCTTCTTAC
CCTCGGTGATGGATGCGGCAGCCATGGCTCAGTTGAAGGAACAAAAGAGA
ATCCAATTGATTGAAAAGAAGATACGGGAGGCGGCCCGACTGAAGTCTTT
AGGGAAAGAGGGAGGGAGGGAGGGAGGGGGGGAGATGGAGTTGTTCGAGG
AGCGGATGTTGCATTATGAGGGCCTGGCGGAGAAGGAGGCTTCAGCAGCA
GCTGAAGTAGCCGAAGAGGAGGAGGGTGAAGGAGGGGGCACGTGGGAGCA
TAAAAAGAGGGCTAGGGAGATGCTCAAGACGGCACAGGATGCCCTTAATC
TCACATTGGCATCCAGGGGGAAGCACCACCTGAGCCAGTTCCTCCCTTCT
CCCGGCGATCTCGACGGATATCTGTCCAAGAAGGGGGAGGGCGGGGGGGA
GGACTACGAAGGGAATAAATTGGATGTTGGAAATAGCACCGGTATGCAGA
TGTTGCAAAAACAAGGCTGGAAGGAGGGGCAGGGACTAGGGAAGGAGGGG
AGAAAGGGGGTGGTGGCACCAGTGAATATGAAGGGGACTGAAGGGGAGGG
GCTGGGGGTGGGAGGGGAGGAAGAGGAGGAGGAAAAAGGAGATGATTTTG
ATGAGTATAGGAAAAGGATGATGCTTGCGTATCGATTTCGGCCGAATCCG
TTGAATAATCCTCGGAGGGAGTATTACTAG
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Synonyms
Publications