NO14G00700.1, NO14G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00700.1
Unique NameNO14G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2741
Alignment locationchr14:252643..255763 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:252643..255763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G00700.1 vs.
Match: EWM24717.1 (hypothetical protein Naga_100978g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 9.600e-32
Identity = 74/120 (61.67%), Postives = 93/120 (77.50%), Query Frame = 0
Query:    1 MVLQSIVDRLKGAREVTIKRLYKLVLRKALGNFLAGQLGVDQLDVKLIVLED----TPSSPGTFPSSTRQGCVQLTDLEINVDPLNGFLASQPLQLHKGRIGKVEVTVCYEKLLTEGLRI 117
            MVLQ+ VDRL+G +E+T+KRLYK VL+KALG FLAGQLGVDQLDVK IVLED     P SPG  P+  R+G VQL D+ +NV+ +N  L  QP +LH+GR+GKVEV VCYE++L EG+ +
Sbjct:    1 MVLQAFVDRLRGVQEITVKRLYKFVLKKALGKFLAGQLGVDQLDVKFIVLEDDTTSAPPSPGAPPA--RRGYVQLRDIVMNVEAVNALLTDQPFKLHRGRLGKVEVRVCYEQVLREGMEV 118          
The following BLAST results are available for this feature:
BLAST of NO14G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24717.19.600e-3261.67hypothetical protein Naga_100978g4, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00700NO14G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00700.1NO14G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00700.1.cds1NO14G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00700.1.cds2NO14G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00700.1.cds3NO14G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00700.1 ID=NO14G00700.1|Name=NO14G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp
GTGCTGTCATGTGGGAGAGTGGGAGAGAAGCAATAGAAGCATATGCCCGG
CGAGTCCTTTCTTTTTTTTCACTTTCATCACACCACCAACCGGGGCCCGG
GAGCGCAAGCACGTGCACTCTCTGCCCTGGACCCAGCACACCATCACGAA
TAACAGTCGGTTACCATGCGTATGCAGGCCATGTCGCGGCAATTGTTCAC
GTTGCTGCAAGAGAGACAGATCGTGAAGGCGTTGCAGCAGCGAAGAGCAA
ATGCCTTCACGCTTCTCTCACGCGTGTCCCCCTCCTTCTAAGCACAGGTA
GCCGCAGGGGCAAGAGGAGCAGTACCACGCACCACCCCTTTCTCTTTTCA
ATCGTACAACAGCCAGGACGGGGACCACGGGCCATGATCTAGACGAACAA
CAATCAGCATCAGTAGGATCAGTAGGATCAGTAGGATCAATAGCAGTGCA
GTGCTGGACCTCTCCTGAAAACTACAACCCCAACAAAAATGGTGCTCCAA
AGCATAGTCGACCGGCTGAAAGGAGCCCGCGAAGTAACGATCAAGCGGTT
GTATAAATTAGTCCTCCGCAAAGCCCTGGGCAATTTCCTAGCAGGTCAGC
TGGGGGTCGATCAGCTCGACGTAAAGCTCATCGTCCTTGAGGACACCCCT
TCCTCCCCCGGTACCTTCCCCTCATCCACCCGGCAAGGCTGTGTACAATT
AACTGATTTAGAGATAAATGTTGACCCGTTAAATGGTTTTTTGGCGTCTC
AACCATTGCAATTGCATAAAGGGAGGATTGGGAAGGTGGAAGTGACAGTG
TGTTATGAGAAGCTGTTGACAGAAGGGCTTAGGATTGTTCTGGAAGATGT
CGAGTTGGTATTGGTGCGACGCAAACCAGAAAAGGGTGATGAGAAGGGAA
GAAATATTGGGAGAGTGGCAGAGGTGAGGAGGAAGACGAAAAGGGAGGAG
GAGAAGGAGAAGATGGAAATGGTGGAGGCCAAGGCGAAAGAGGCGGCCAA
CAGGAGGAGGAGCAGTAGCAGCAGCAGGGGCAGTGAAGATGCTAGCATTA
TCGCAGAATGGATCGAACAGATCACGACGCAGCTTCGCGTGGAGGTGAAG
GGATTGAAGGTCCGCCTCGTGGAAGATCCCGCCCAAACGTCCGCCCCGTC
CTTGTCTTTGCTTGTCCGTCGTGCGCACTACGAAGACGTCACGGCCAGAT
ATCGAGGGGGAGGGGGCGGGAGGGAAGGAGGAGGGGACGCGGATGGTCTC
ACTGGCCCCTCTCTCCCGCCCTCCTCCTCCTGGGAGGTGTCGCATAAGCG
AGTGCGGTTCGAAGGTGTGGAGGTGTGGTTGGAACGAGGGAGGGAGGGGA
GGGGGCCACCGTTTGCGGCACTGGGAAGAGGAGGGGGAGGAGGAGGGAAA
GGAAGAAGAAGAGGAGGGCGACACCTAAATAATGGGAATGGACAGAGCGA
GGAGGAGGAGGAGGAGGAGGAGGACGACGAAAATTCCATCAGTGCAACTG
CCTCTTCCTTTCCTCCCCCCCGCCCGTCCTTCTCCTCCTCCTCCTCCTCC
CTCCGCCTGTTGGAAGTAACGGACGAGGGTCAGTTGGACGTTAAGATCGG
GCATTCCACTCGTCCGGCCCAAGCCGCCAAGCTGGACTTCCGTCTGCAGA
TCAAGCACATCCTTCTTTCCGTCTCCCCCTCCCTCCTTCAAGACCTCCTT
TTTCTCTACTCCTCTTGCTCTGCCTTCCCGGGAAAGGACACGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGCTCTTTGCTTGGCATGGCGACG
AGAGGGACGTACCGGACGTGGGAGGGTTAGACTTTGATGAGGTTGAGAAG
GCCTTGGAAGACTATGGAAGGTACAGGGGATTGGTGCCCAGGGAGGGAGG
GGGGAAGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAAG
GATTATTTTTCGATTGTGTGAATGGGGTGGAAACCGCGCTGTGGGAGAGC
ATGCATAGGGAGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGGCGGAAG
GACCGAGGGATCTTCATTGAGGTTACGTGTTGATGTCGTTGGAGGGACGC
TGCTGGCGTTCGCTTCCGATGATGGGGTGGGTGGGATGGTGGGAGGGAGG
GAGGGAAGACAGGAGGAAGGGCAACGAGCACGCCTCCAAACCACCACCAC
CAACACCACTGCTGCTGCTGCTGCTGATGCTGCTGCTGCTGATAATAATG
ATGATGATGGTGATGATGAGAGAGATGTTTGTCGTACTGCTGCTGTTCCT
TGTCTGAGGGTGGAATGGCAAGAGTTGCTGGCGGCTACTGGACCAGTGGG
CCTGGAGAAGGTGACCACTGCCTTCTCGGTGGGAGGGCTGCGGGTCGTCG
AGGAGGGAGGGAAGGAGGGCGGGCGGGTGTGGCTTGGGTTTGAGGCGATG
GACGAGGAGGATGGGAGGGGGAGGAAGGGGGGGAGGAAGGGGGAGAGGAG
CGGGGGCGTCTTTGTTGCTTCTTCACTGGTGCCGCTGGATGGGACCATTG
ATGCCTTTCGACTTCCTCCTTCCTCCTCCTCCCTCCCTTCCTCCTTACCT
TCCTCAATGTCGATTTCCGTTAAAATTAGCGTTCGGCCGTTTCACACGGA
CGTCAATGTCGGGAAATTCAAGCGTTGGGTGGGACTGTACAGTGGGGCGA
TGGGAGGGGGGGAGGGAGGGGGGAAGGGAGGGGGGGGGTAA
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protein sequence of NO14G00700.1

>NO14G00700.1-protein ID=NO14G00700.1-protein|Name=NO14G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MVLQSIVDRLKGAREVTIKRLYKLVLRKALGNFLAGQLGVDQLDVKLIVL
EDTPSSPGTFPSSTRQGCVQLTDLEINVDPLNGFLASQPLQLHKGRIGKV
EVTVCYEKLLTEGLRIVLEDVELVLVRRKPEKGDEKGRNIGRVAEVRRKT
KREEEKEKMEMVEAKAKEAANRRRSSSSSRGSEDASIIAEWIEQITTQLR
VEVKGLKVRLVEDPAQTSAPSLSLLVRRAHYEDVTARYRGGGGGREGGGD
ADGLTGPSLPPSSSWEVSHKRVRFEGVEVWLERGREGRGPPFAALGRGGG
GGGKGRRRGGRHLNNGNGQSEEEEEEEEDDENSISATASSFPPPRPSFSS
SSSSLRLLEVTDEGQLDVKIGHSTRPAQAAKLDFRLQIKHILLSVSPSLL
QDLLFLYSSCSAFPGKDTREGGREGGREGGLFAWHGDERDVPDVGGLDFD
EVEKALEDYGRYRGLVPREGGGKEEKEEEKEEEEEEEGLFFDCVNGVETA
LWESMHREEGEGGREGGRGGRTEGSSLRLRVDVVGGTLLAFASDDGVGGM
VGGREGRQEEGQRARLQTTTTNTTAAAAADAAAADNNDDDGDDERDVCRT
AAVPCLRVEWQELLAATGPVGLEKVTTAFSVGGLRVVEEGGKEGGRVWLG
FEAMDEEDGRGRKGGRKGERSGGVFVASSLVPLDGTIDAFRLPPSSSSLP
SSLPSSMSISVKISVRPFHTDVNVGKFKRWVGLYSGAMGGGEGGGKGGGG
*
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mRNA from alignment at chr14:252643..255763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00700.1 ID=NO14G00700.1|Name=NO14G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=3121bp|location=Sequence derived from alignment at chr14:252643..255763- (Nannochloropsis oceanica)
GTGCTGTCATGTGGGAGAGTGGGAGAGAAGCAATAGAAGCATATGCCCGG CGAGTCCTTTCTTTTTTTTCACTTTCATCACACCACCAACCGGGGCCCGG GAGCGCAAGCACGTGCACTCTCTGCCCTGGACCCAGCACACCATCACGAA TAACAGTCGGTTACCATGCGTATGCAGGCCATGTCGCGGCAATTGTTCAC GTTGCTGCAAGAGAGACAGATCGTGAAGGCGTTGCAGCAGCGAAGAGCAA ATGCCTTCACGCTTCTCTCACGCGTGTCCCCCTCCTTCTAAGCACAGGTA GCCGCAGGGGCAAGAGGAGCAGTACCACGCACCACCCCTTTCTCTTTTCA ATCGTACAACAGCCAGGACGGGGACCACGGGCCATGATCTAGACGAACAA CAATCAGCATCAGTAGGATCAGTAGGATCAGTAGGATCAATAGCAGTGCA GTGCTGGACCTCTCCTGAAAACTACAACCCCAACAAAAATGGTGCTCCAA AGCATAGTCGACCGGCTGAAAGGAGCCCGCGAAGTAACGATCAAGCGGTT GTATAAATTAGTCCTCCGCAAAGCCCTGGGCAATTTCCTAGCAGGTCAGC TGGGGGTCGATCAGCTCGACGTAAAGCTCATCGTCCTTGAGGACACCCCT TCCTCCCCCGGTACCTTCCCCTCATCCACCCGGCAAGGCTGTGTACAATT AACTGATTTAGAGATAAATGTTGACCCGTTAAATGGTTTTTTGGCGTCTC AACCATTGCAATTGCATAAAGGGAGGATTGGGAAGGTGGAAGTGACAGTG TGTTATGAGAAGCTGTTGACAGAAGGGCTTAGGATTGTTCTGGAAGATGT CGAGTTGGTATTGGTGCGACGCAAACCAGAAAAGGGTGATGAGAAGGGAA GAAATATTGGGAGAGTGGCAGAGGTGAGGAGGAAGACGAAAAGGGAGGAG GAGAAGGAGAAGATGGAAATGGTGGAGGCCAAGGCGAAAGAGGCGGCCAA CAGGAGGAGGAGCAGTAGCAGCAGCAGGGGCAGTGAAGATGCTAGCATTA TCGCAGAATGGATCGAACAGATCACGACGCAGCTTCGCGTGGAGGTGAAG GGATTGAAGGTCCGCCTCGTGGAAGGTACGTCCCTTTCTCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCTTTCCTGAGCGGATCGGGGTAGAACTC AATAGCTTTCATCCCTCCCTCCTTTCCCTCCCTTTTCACCTGAATTGTAC GTGGATCGCATGGACTTCACCTCCACACTGTTAACCCTAACCCTAATTAA CGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCTTTCCAG ATCCCGCCCAAACGTCCGCCCCGTCCTTGTCTTTGCTTGTCCGTCGTGCG CACTACGAAGACGTCACGGCCAGATATCGAGGGGGAGGGGGCGGGAGGGA AGGAGGAGGGGACGCGGATGGTCTCACTGGCCCCTCTCTCCCGCCCTCCT CCTCCTGGGAGGTGTCGCATAAGCGAGTGCGGTTCGAAGGTGTGGAGGTG TGGTTGGAACGAGGGAGGGAGGGGAGGGGGCCACCGTTTGCGGCACTGGG AAGAGGAGGGGGAGGAGGAGGGAAAGGAAGAAGAAGAGGAGGGCGACACC TAAATAATGGGAATGGACAGAGCGAGGAGGAGGAGGAGGAGGAGGAGGAC GACGAAAATTCCATCAGTGCAACTGCCTCTTCCTTTCCTCCCCCCCGCCC GTCCTTCTCCTCCTCCTCCTCCTCCCTCCGCCTGTTGGAAGTAACGGACG AGGGTCAGTTGGACGTTAAGATCGGGCATTCCACTCGTCCGGCCCAAGCC GCCAAGCTGGACTTCCGTCTGCAGGTACCTCCCGCCCTCCTTTCCCCCCT CCTTCCCTCCCTCCCCCCTCCCCCCCTTCCTCCCGCCCGCCCTCTACTTT CCTCCTTCTCTTCATCTCGCTTCACCCCTCCCTTTCTCCCTCCTTTCCTC CCTCCCTCCCCCCTCTTCCCTTATATCAGATCAAGCACATCCTTCTTTCC GTCTCCCCCTCCCTCCTTCAAGACCTCCTTTTTCTCTACTCCTCTTGCTC TGCCTTCCCGGGAAAGGACACGAGGGAGGGAGGGAGGGAGGGAGGGAGGG AGGGAGGGCTCTTTGCTTGGCATGGCGACGAGAGGGACGTACCGGACGTG GGAGGGTTAGACTTTGATGAGGTTGAGAAGGCCTTGGAAGACTATGGAAG GTACAGGGGATTGGTGCCCAGGGAGGGAGGGGGGAAGGAGGAGAAGGAGG AGGAGAAGGAGGAGGAGGAGGAGGAGGAAGGATTATTTTTCGATTGTGTG AATGGGGTGGAAACCGCGCTGTGGGAGAGCATGCATAGGGAGGAGGGGGA GGGAGGGAGGGAGGGAGGGAGGGGCGGAAGGACCGAGGGATCTTCATTGA GGTTACGTGTTGATGTCGTTGGAGGGACGCTGCTGGCGTTCGCTTCCGAT GATGGGGTGGGTGGGATGGTGGGAGGGAGGGAGGGAAGACAGGAGGAAGG GCAACGAGCACGCCTCCAAACCACCACCACCAACACCACTGCTGCTGCTG CTGCTGATGCTGCTGCTGCTGATAATAATGATGATGATGGTGATGATGAG AGAGATGTTTGTCGTACTGCTGCTGTTCCTTGTCTGAGGGTGGAATGGCA AGAGTTGCTGGCGGCTACTGGACCAGTGGGCCTGGAGAAGGTGACCACTG CCTTCTCGGTGGGAGGGCTGCGGGTCGTCGAGGAGGGAGGGAAGGAGGGC GGGCGGGTGTGGCTTGGGTTTGAGGCGATGGACGAGGAGGATGGGAGGGG GAGGAAGGGGGGGAGGAAGGGGGAGAGGAGCGGGGGCGTCTTTGTTGCTT CTTCACTGGTGCCGCTGGATGGGACCATTGATGCCTTTCGACTTCCTCCT TCCTCCTCCTCCCTCCCTTCCTCCTTACCTTCCTCAATGTCGATTTCCGT TAAAATTAGCGTTCGGCCGTTTCACACGGACGTCAATGTCGGGAAATTCA AGCGTTGGGTGGGACTGTACAGTGGGGCGATGGGAGGGGGGGAGGGAGGG GGGAAGGGAGGGGGGGGGTAA
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Coding sequence (CDS) from alignment at chr14:252643..255763-

>NO14G00700.1 ID=NO14G00700.1|Name=NO14G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at chr14:252643..255763- (Nannochloropsis oceanica)
ATGGTGCTCCAAAGCATAGTCGACCGGCTGAAAGGAGCCCGCGAAGTAAC
GATCAAGCGGTTGTATAAATTAGTCCTCCGCAAAGCCCTGGGCAATTTCC
TAGCAGGTCAGCTGGGGGTCGATCAGCTCGACGTAAAGCTCATCGTCCTT
GAGGACACCCCTTCCTCCCCCGGTACCTTCCCCTCATCCACCCGGCAAGG
CTGTGTACAATTAACTGATTTAGAGATAAATGTTGACCCGTTAAATGGTT
TTTTGGCGTCTCAACCATTGCAATTGCATAAAGGGAGGATTGGGAAGGTG
GAAGTGACAGTGTGTTATGAGAAGCTGTTGACAGAAGGGCTTAGGATTGT
TCTGGAAGATGTCGAGTTGGTATTGGTGCGACGCAAACCAGAAAAGGGTG
ATGAGAAGGGAAGAAATATTGGGAGAGTGGCAGAGGTGAGGAGGAAGACG
AAAAGGGAGGAGGAGAAGGAGAAGATGGAAATGGTGGAGGCCAAGGCGAA
AGAGGCGGCCAACAGGAGGAGGAGCAGTAGCAGCAGCAGGGGCAGTGAAG
ATGCTAGCATTATCGCAGAATGGATCGAACAGATCACGACGCAGCTTCGC
GTGGAGGTGAAGGGATTGAAGGTCCGCCTCGTGGAAGATCCCGCCCAAAC
GTCCGCCCCGTCCTTGTCTTTGCTTGTCCGTCGTGCGCACTACGAAGACG
TCACGGCCAGATATCGAGGGGGAGGGGGCGGGAGGGAAGGAGGAGGGGAC
GCGGATGGTCTCACTGGCCCCTCTCTCCCGCCCTCCTCCTCCTGGGAGGT
GTCGCATAAGCGAGTGCGGTTCGAAGGTGTGGAGGTGTGGTTGGAACGAG
GGAGGGAGGGGAGGGGGCCACCGTTTGCGGCACTGGGAAGAGGAGGGGGA
GGAGGAGGGAAAGGAAGAAGAAGAGGAGGGCGACACCTAAATAATGGGAA
TGGACAGAGCGAGGAGGAGGAGGAGGAGGAGGAGGACGACGAAAATTCCA
TCAGTGCAACTGCCTCTTCCTTTCCTCCCCCCCGCCCGTCCTTCTCCTCC
TCCTCCTCCTCCCTCCGCCTGTTGGAAGTAACGGACGAGGGTCAGTTGGA
CGTTAAGATCGGGCATTCCACTCGTCCGGCCCAAGCCGCCAAGCTGGACT
TCCGTCTGCAGATCAAGCACATCCTTCTTTCCGTCTCCCCCTCCCTCCTT
CAAGACCTCCTTTTTCTCTACTCCTCTTGCTCTGCCTTCCCGGGAAAGGA
CACGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTCTTTGCTT
GGCATGGCGACGAGAGGGACGTACCGGACGTGGGAGGGTTAGACTTTGAT
GAGGTTGAGAAGGCCTTGGAAGACTATGGAAGGTACAGGGGATTGGTGCC
CAGGGAGGGAGGGGGGAAGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGG
AGGAGGAGGAAGGATTATTTTTCGATTGTGTGAATGGGGTGGAAACCGCG
CTGTGGGAGAGCATGCATAGGGAGGAGGGGGAGGGAGGGAGGGAGGGAGG
GAGGGGCGGAAGGACCGAGGGATCTTCATTGAGGTTACGTGTTGATGTCG
TTGGAGGGACGCTGCTGGCGTTCGCTTCCGATGATGGGGTGGGTGGGATG
GTGGGAGGGAGGGAGGGAAGACAGGAGGAAGGGCAACGAGCACGCCTCCA
AACCACCACCACCAACACCACTGCTGCTGCTGCTGCTGATGCTGCTGCTG
CTGATAATAATGATGATGATGGTGATGATGAGAGAGATGTTTGTCGTACT
GCTGCTGTTCCTTGTCTGAGGGTGGAATGGCAAGAGTTGCTGGCGGCTAC
TGGACCAGTGGGCCTGGAGAAGGTGACCACTGCCTTCTCGGTGGGAGGGC
TGCGGGTCGTCGAGGAGGGAGGGAAGGAGGGCGGGCGGGTGTGGCTTGGG
TTTGAGGCGATGGACGAGGAGGATGGGAGGGGGAGGAAGGGGGGGAGGAA
GGGGGAGAGGAGCGGGGGCGTCTTTGTTGCTTCTTCACTGGTGCCGCTGG
ATGGGACCATTGATGCCTTTCGACTTCCTCCTTCCTCCTCCTCCCTCCCT
TCCTCCTTACCTTCCTCAATGTCGATTTCCGTTAAAATTAGCGTTCGGCC
GTTTCACACGGACGTCAATGTCGGGAAATTCAAGCGTTGGGTGGGACTGT
ACAGTGGGGCGATGGGAGGGGGGGAGGGAGGGGGGAAGGGAGGGGGGGGG
TAA
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Synonyms
Publications