NO14G00610.1, NO14G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00610.1
Unique NameNO14G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr14:233546..235655 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:233546..235655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00610.1 vs.
Match: WP_099058193.1 (isopenicillin N synthase family oxygenase [Rhizobium sp. ACO-34A]; ATN34777.1 2OG-Fe(II) oxygenase [Rhizobium sp. ACO-34A])

HSP 1 Score: 174.9 bits (442), Expect = 3.500e-40
Identity = 115/272 (42.28%), Postives = 147/272 (54.04%), Query Frame = 0 
Query:    6 YPYGYSGFGGEVLSHSKAYEHAHHSSSSSSSSSSLPPSLPDPKESFSIGPSDPASGMPAVR----------WPPSPPSFAPAIAAYYQAMETLSSSLLELFALALSLPPSFFTSLMIGHCSALRLLNYPP--LPPSFPPSLRASPHTDYGILTLL--RSGGRGLEVLRRREGEREGGGEWVAVPEVGDSFVVNLGDLMGRWTNDWWVSTMHRVVEEGEGEGGGKRRQTMAFFCNLPARVMVECLETCRREGEAEPRHKPINAMEFLLQKHHA 264
            YPYGY G G E L+ SK  +                 + PD KESF+ GP    +GM              WP  P  FA A  AYY+AME L+  ++ +FA+AL LP  FF   +    SALR LNYP   + P  P  LRA  HTDYG LT+L    G RGLE+L          G+WV+VP V  +FV+N+GDLM  WTND WVST+HRVV     EGG  RRQ++AFF        + CL+TC   G+ EPR++P+ +  +L+ K  A
Sbjct:   77 YPYGYLGPGTEALAKSKNVD-----------------TPPDLKESFNGGPLAVPAGMTDSEALSFCYAQTIWPAGPEGFADAWKAYYRAMEDLARRIMRVFAVALKLPEDFFEDFIDQPISALRALNYPAQTVAPQ-PGQLRAGAHTDYGSLTILLPEPGSRGLEILSPE-------GDWVSVPPVPGAFVINIGDLMSLWTNDLWVSTLHRVVNPPPEEGGLDRRQSLAFFHQPNWFAEIRCLDTCLSPGD-EPRYQPVLSGPYLMGKFKA 322
The following BLAST results are available for this feature:
BLAST of NO14G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_099058193.13.500e-4042.28isopenicillin N synthase family oxygenase [Rhizobi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00610NO14G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00610.1NO14G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00610.1.cds1NO14G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.1.cds2NO14G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.1.cds3NO14G00610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.1.cds4NO14G00610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00610.1 ID=NO14G00610.1|Name=NO14G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp
TCCCTCCCTCCCTCCCTTCCTCCTACCTGGTACTACCCTTGCATCCTCCC
TCCTCTCCCTCCCTTCCTCCCTCTCTCAGCGCCTGTGAAGATGTGGGTTT
CTTCATCATCACACACCACGGCGTCCCTCCCTCCATTATCCACAATGCGT
GGGCGGCAGCCACCGAGTTTTTCGACCTGCCTACGGAGGAAAAGGAAAAA
TCGGTCAAGATGGAGGGGAGCCAATACCCTTACGGCTACTCTGGCTTTGG
CGGCGAAGTCCTCTCTCACAGCAAGGCCTATGAACATGCCCACCACTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTGACCCC
AAAGAGTCCTTCTCCATCGGTCCCTCTGACCCTGCTTCCGGCATGCCGGC
CGTTAGATGGCCACCCTCGCCCCCCTCCTTCGCGCCCGCCATCGCCGCCT
ACTATCAGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGTTCGCC
CTCGCCCTCTCCCTCCCACCTTCCTTCTTCACCTCCCTCATGATCGGCCA
CTGCTCTGCCCTCCGCCTCCTCAACTACCCCCCCCTCCCTCCCTCCTTCC
CTCCCTCCCTCCGCGCCTCCCCGCACACGGACTATGGGATCTTGACCCTC
CTGCGCTCGGGCGGGAGGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGA
GAGGGAGGGAGGGGGGGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCT
TTGTGGTTAATTTGGGCGATCTGATGGGGAGGTGGACGAACGACTGGTGG
GTCTCGACGATGCATAGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGG
GAAGAGGAGGCAGACCATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGA
TGGTGGAGTGCTTGGAGACGTGCCGGAGGGAGGGGGAGGCAGAACCGAGG
CACAAGCCGATTAATGCAATGGAGTTTTTGCTTCAAAAACATCATGCGGC
GACAGGCGGGGAAAAGAAGGAGTAGGGAGGGAGGGAAGGAGGGAGAGAGG
GAGGGAGGAAGCGTGTGTGTGGCACACTCGACTGCAGGTTTTGCTGAGAA
ATGAATGTCATGGACAGATAGAGATGTAAATCAATCAAATACTCCAAGCA
CTGCCAGTACGAGAAACATCCAGCCCCTCGACGTGTGAGTGTGTGTGACG
TGACGTTATTGTTCTTATTGTGTTAGAAAGGTCGTCAGGGGTGGGGCAAA
TGAGGCCCTGGAAACTCCCATTCTCCTTCCTTCCTCTGATATGTGACAAT
AGCGGTGGCTGTTGTTTGCGTTTCGATTGCCGTACGTGTGGTGATGGAGG
TGGTAGTCGACATTGTGGTACTTGTCATTCCTCTCGTTAACGTTGTTGTT
GCTGTGGTCATTTTTTTCTCATCTACAGTGAGTCAGGTGGCTATTGTTGT
TTTGCTTTACGTCGTTCATTCTATTATACATACACATCATCTTCCTCTCT
TCCTCTCTTCATCCTCTTCCCCTCCCCTCTCCTCTCCTTGTGCCCTCCCT
TTGCCTTCCCCCCCACACATCGACGTCTGGCCCG
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protein sequence of NO14G00610.1

>NO14G00610.1-protein ID=NO14G00610.1-protein|Name=NO14G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MEGSQYPYGYSGFGGEVLSHSKAYEHAHHSSSSSSSSSSLPPSLPDPKES
FSIGPSDPASGMPAVRWPPSPPSFAPAIAAYYQAMETLSSSLLELFALAL
SLPPSFFTSLMIGHCSALRLLNYPPLPPSFPPSLRASPHTDYGILTLLRS
GGRGLEVLRRREGEREGGGEWVAVPEVGDSFVVNLGDLMGRWTNDWWVST
MHRVVEEGEGEGGGKRRQTMAFFCNLPARVMVECLETCRREGEAEPRHKP
INAMEFLLQKHHAATGGEKKE*
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mRNA from alignment at chr14:233546..235655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00610.1 ID=NO14G00610.1|Name=NO14G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2110bp|location=Sequence derived from alignment at chr14:233546..235655- (Nannochloropsis oceanica)
TCCCTCCCTCCCTCCCTTCCTCCTACCTGGTACTACCCTTGCATCCTCCC
TCCTCTCCCTCCCTTCCTCCCTCTCTCAGCGCCTGTGAAGATGTGGGTTT
CTTCATCATCACACACCACGGCGTCCCTCCCTCCATTATCCACAATGCGT
GGGCGGCAGCCACCGAGTTTTTCGACCTGCCTACGGAGGAAAAGGAAAAA
TCGGTCAAGATGGAGGGGAGCCAATACCCTTACGGTAAGAACGAGGGCAG
GAAGCAGGGAGGGAGGGAGATAGGAAGGGAGGGATATTTATCAATTGATT
TACTCACGATTCTTTAAGTTACTCACTATTCCCTAATTTATCACAACTCC
CCATCTCTTCCTCCCTCCCTCCCTCCCTCCTTCCCTCAGGCTACTCTGGC
TTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCCTATGAACATGCCCACCA
CTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTG
ACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTGACCCTGCTTCCGGCATG
CCGGCCGTTAGATGGCCACCCTCGCCCCCCTCCTTCGCGCCCGCCATCGC
CGCCTACTATCAGGTACCTCGCTTCCTCCCTCCCTTCCTCATTCCTTCCT
CCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCACCTTTCTTTTTATCCCC
CCGCTTTTCCCTCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTC
CTTCCTTCCTTCCTTCCTCCCTCTTTCTCCGGCTGTTTGTCGCAATCCAT
TCGTTCCATCCCTTCCCTTTTCACCCTCCCTACTTCCCTCCTTCCTCCCT
CCCTTCCTCGTTCCCTCCAGGCCATGGAAACCCTCTCCTCCTCCCTCTTG
GAGCTGTTCGCCCTCGCCCTCTCCCTCCCACCTTCCTTCTTCACCTCCCT
CATGATCGGCCACTGCTCTGCCCTCCGCCTCCTCAACTACCCCCCCCTCC
CTCCCTCCTTCCCTCCCTCCCTCCGCGCCTCCCCGCACACGGACTATGGG
ATCTTGACCCTCCTGCGCTCGGGCGGGAGGGGCTTGGAAGTCCTGCGGAG
GAGGGAGGGAGAGAGGGAGGGAGGGGGGGAATGGGTGGCGGTTCCGGAGG
TGGGGGATTCCTTTGTGGTTAATTTGGGCGATCTGATGGGGAGGTGGACG
AACGACTGGTGGGTCTCGACGATGCATAGAGTAGTGGAGGAGGGAGAGGG
GGAGGGAGGGGGGAAGAGGAGGCAGACCATGGCGTTTTTTTGCAATTTGC
CGGCGAGAGTGATGGTGGAGTGCTTGGAGACGTGCCGGAGGGAGGGGGAG
GCAGAACCGAGGTAGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGTGGGACAAACATCTTGTTGTACATGGTCT
GATTCACATGCACCCACCGCGATAGGCACAAGCCGATTAATGCAATGGAG
TTTTTGCTTCAAAAACATCATGCGGCGACAGGCGGGGAAAAGAAGGAGTA
GGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGAGGAAGCGTGTGTGTGGCA
CACTCGACTGCAGGTTTTGCTGAGAAATGAATGTCATGGACAGATAGAGA
TGTAAATCAATCAAATACTCCAAGCACTGCCAGTACGAGAAACATCCAGC
CCCTCGACGTGTGAGTGTGTGTGACGTGACGTTATTGTTCTTATTGTGTT
AGAAAGGTCGTCAGGGGTGGGGCAAATGAGGCCCTGGAAACTCCCATTCT
CCTTCCTTCCTCTGATATGTGACAATAGCGGTGGCTGTTGTTTGCGTTTC
GATTGCCGTACGTGTGGTGATGGAGGTGGTAGTCGACATTGTGGTACTTG
TCATTCCTCTCGTTAACGTTGTTGTTGCTGTGGTCATTTTTTTCTCATCT
ACAGTGAGTCAGGTGGCTATTGTTGTTTTGCTTTACGTCGTTCATTCTAT
TATACATACACATCATCTTCCTCTCTTCCTCTCTTCATCCTCTTCCCCTC
CCCTCTCCTCTCCTTGTGCCCTCCCTTTGCCTTCCCCCCCACACATCGAC
GTCTGGCCCG
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Coding sequence (CDS) from alignment at chr14:233546..235655-

>NO14G00610.1 ID=NO14G00610.1|Name=NO14G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr14:233546..235655- (Nannochloropsis oceanica)
ATGGAGGGGAGCCAATACCCTTACGGCTACTCTGGCTTTGGCGGCGAAGT
CCTCTCTCACAGCAAGGCCTATGAACATGCCCACCACTCCTCCTCCTCCT
CCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTGACCCCAAAGAGTCC
TTCTCCATCGGTCCCTCTGACCCTGCTTCCGGCATGCCGGCCGTTAGATG
GCCACCCTCGCCCCCCTCCTTCGCGCCCGCCATCGCCGCCTACTATCAGG
CCATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGTTCGCCCTCGCCCTC
TCCCTCCCACCTTCCTTCTTCACCTCCCTCATGATCGGCCACTGCTCTGC
CCTCCGCCTCCTCAACTACCCCCCCCTCCCTCCCTCCTTCCCTCCCTCCC
TCCGCGCCTCCCCGCACACGGACTATGGGATCTTGACCCTCCTGCGCTCG
GGCGGGAGGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGAGAGGGAGGG
AGGGGGGGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCTTTGTGGTTA
ATTTGGGCGATCTGATGGGGAGGTGGACGAACGACTGGTGGGTCTCGACG
ATGCATAGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGGGAAGAGGAG
GCAGACCATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGATGGTGGAGT
GCTTGGAGACGTGCCGGAGGGAGGGGGAGGCAGAACCGAGGCACAAGCCG
ATTAATGCAATGGAGTTTTTGCTTCAAAAACATCATGCGGCGACAGGCGG
GGAAAAGAAGGAGTAG
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Synonyms
Publications