NO14G00600.1, NO14G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00600.1
Unique NameNO14G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2261
Alignment locationchr14:230636..233381 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:230636..233381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00600.1 vs.
Match: XP_002176804.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC51267.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 122.5 bits (306), Expect = 5.100e-24
Identity = 109/324 (33.64%), Postives = 148/324 (45.68%), Query Frame = 0 
Query:  241 RAQSSSSTRFATASFHFDDLPP------PLPLVLHPSFPPSHPPAL---VPEVALAGKSNVGKSTLLNALL--------------------SLSPSKRGAAAVGDKPGVTKSLDFYRV--------GPVSKPRLVVVDLPGYGFAYGKAERIDQAQRLCLSYLRHRGHP-LKRLLLLLDARHGLKQTDRHFLQQLYTPPSSLPFSPSSSSPSVAYDSDHPTEEQSMSSSSSSLPPSLPPFRPPKLQLVFTKCDLVPRDELAKRIGMVRKEIEGGREGGREGGRDLGRLPSLMVSAGRG-----------RKGITELQAELAAVL 516
            RA +  +T       H+   PP      P+ +V + +    H PA    +PE+ LAG+SNVGKSTLLNALL                    S+   K   A   DKPG T+++ FY++        G      L +VDLPGYGFAY K E   + + L   YL  RG+  LKR+LLL+DARHG+K+ D  FL  L      L                   +E S           LPP     +QLV TKCDLV R +LA+R+  VR ++           R+  +LP ++VSA  G           R G+ ELQ E+ A++
Sbjct:   72 RAMNPEATEDQKRERHWKPPPPFGPKAFPVKVVGNVATLDDHYPANHKNIPEIVLAGRSNVGKSTLLNALLYGNKHADAVVRQRVRGKTPESVKQPKGMKATTSDKPGETRAITFYQLAARLERENGVFYDHALRLVDLPGYGFAYAKEEAARRYRALMADYLLKRGNKYLKRVLLLIDARHGMKKADVDFLMDLQEHSRHL-------------------QENSRLDGKRKKNAQLPP-----IQLVLTKCDLVTRADLARRVAQVRSQLSDCFI------REPSQLPVMLVSARAGVGYNNVVGDKARGGVLELQKEIVALV 365
The following BLAST results are available for this feature:
BLAST of NO14G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002176804.15.100e-2433.64predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00600NO14G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00600.1NO14G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00600.1.cds1NO14G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00600.1.cds2NO14G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00600.1.cds3NO14G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00600.1 ID=NO14G00600.1|Name=NO14G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp
GAAGGGTGACGCAAGGACCTCCACACCCTCTGCCCTCTGCTCTTGTGACC
ATCTCCTCGGGCTCCCATGCCCCCCAACAACCACCACTGCTTAACGAATG
CATATATCATATTGCTCATCATTCGTTTCAAGTGCGGATAAAGGCAACGG
GGCACCAGCAAGCTAATCAAATGTAAAACTCATAAAGCAAGATAGCGTGA
CCTCCCCCCACCCACTTACATCTTCAGGGCCTGCACCCGCGCCCATAGAG
AATGTTCCAGGGCACGGCCTTGGCACTGCGGCGGCGAATACCATTCAGCG
TCACCAGTAGCAGTTGCAGCAACAGTAGTTGCAGACCTGCAATTCGATGG
CTGTCTCTTCCTGCCCTTCCCCCCTCGCTTTCCTTCTCCCCCCGACTGTC
CCCACCCAACACGACTACAGCGGGATACGCCCAAGCCAGCAGTCCCTTCC
ACAAAAATAAAGCAGATTCACCAAGTAGGGAAAAAGAGGAAGGGGCAGGA
GCAGTCGGAGGAAAAGGAGAAAGTCTCCGCCAGCGTCTGAAGCATGCCCC
GATCGATCCCCGTCTTTACCAACACTTGGAGCGCCTCGGCCTCGGCAGTG
AGAGCACCATCCGACACAAAAAGCTCAAGAAACAACAGAAAAAGCGGAAG
TTGACTGTGGGGGAGCTGAGAGGGATTGATGCGCAGATCACGCGGGATTC
GATTCCCTATTTTCAGGCGAACCGTTTCAGGCAATGCAAGCGAGCAGTGC
GCAAAGAAAAACGACGCCTCATCCGGGAGCTGGCCAACAACAAACACCTC
CACCGCCGCTTTCCCTCCCCTTCCTCCTCTGCTGCTACGGCCGCTGCTGC
TGCCTTAGCGGGTGGTGCTACCGCAGGAGCGGAAGGAGGGCGCATTCGTA
GCCCCTCCTCCCCTGCTCCTCCCCCTCCTTCCCTCCCTCCTCAACCACAC
TACCAATTCGCCCGGCTCTTTCGCGCGCAGTCATCCTCCTCCACGCGCTT
CGCCACTGCCTCCTTCCACTTCGACGACCTCCCCCCTCCCCTCCCCCTCG
TCCTCCACCCCTCCTTCCCTCCCTCTCACCCTCCTGCTCTCGTCCCCGAA
GTGGCCTTGGCCGGAAAGAGTAATGTGGGGAAGAGCACCCTGCTCAATGC
CCTTCTATCCCTCTCGCCCAGCAAGAGGGGAGCAGCCGCCGTGGGGGACA
AGCCGGGGGTTACCAAATCTCTGGATTTCTACCGCGTGGGGCCCGTGAGC
AAGCCCCGCCTCGTGGTGGTGGACTTACCAGGGTACGGATTCGCGTATGG
GAAAGCGGAACGGATCGATCAAGCGCAGCGATTATGCCTCTCCTACCTCC
GGCACCGAGGCCACCCCCTCAAGCGCCTCCTCCTCCTCCTCGACGCCCGT
CACGGCCTCAAGCAAACCGACCGTCACTTTCTCCAGCAGCTCTACACCCC
TCCCTCCTCCTTGCCTTTCTCCCCATCGTCCTCCTCCCCCTCGGTCGCGT
ACGATTCCGACCACCCGACGGAGGAACAAAGCATGTCCTCCTCCTCGTCC
TCCCTCCCTCCCTCCCTCCCTCCCTTCCGCCCTCCCAAGCTGCAATTGGT
GTTTACGAAATGCGACCTGGTGCCACGCGACGAGCTCGCGAAGCGCATCG
GGATGGTACGAAAAGAGATCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGACTTGGGGAGGTTACCGTCGTTGATGGTGAGCGCTGGGAGGGG
ACGGAAGGGAATCACTGAACTGCAGGCAGAGCTGGCGGCGGTCTTGCCTA
CCCTTCCTCCCTCCCTTCCTCCTTCCCTCCCTCCTTTCCATCCATCTTCT
TCCGCGTCTCGTGGCCCCGGGGGGGAGGAGGGAGGGAGGGGAGGGGGAGG
GGGAGGAAGGGGGAAGGGAAGGAGGAGAGAGAAGGAAGACAATCTCAGTT
TGAGCGAAGGGAGGGAGGAAGAGCAAGAAAAGAAGGAAGGGAGGATGAGA
GAGGGGGAAGGGGAGGTGGTGGGGCCAGGAGTGGCAGCTGGTCGGAGAGA
GGTGAGTGGGAAGGGCGAGAGGAACGAGGAGGAGGGAGGAAGGGAGGAGG
AGGAGGGAGGAAGGGAGGAGGAGGAGGAGGAGGGAGGGATATGTGGGAGG
AGCGTCGGGAAGGAGGAGGGAGGGAAGGAAGGGACGAAGGAGAAGGGAGA
TGGGAAGGGGGGCGGGGGGAGGAGGGCGAGGGATACGAGAGGAGAGATAG
AGGAGCCTTAG
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protein sequence of NO14G00600.1

>NO14G00600.1-protein ID=NO14G00600.1-protein|Name=NO14G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=670bp
MFQGTALALRRRIPFSVTSSSCSNSSCRPAIRWLSLPALPPSLSFSPRLS
PPNTTTAGYAQASSPFHKNKADSPSREKEEGAGAVGGKGESLRQRLKHAP
IDPRLYQHLERLGLGSESTIRHKKLKKQQKKRKLTVGELRGIDAQITRDS
IPYFQANRFRQCKRAVRKEKRRLIRELANNKHLHRRFPSPSSSAATAAAA
ALAGGATAGAEGGRIRSPSSPAPPPPSLPPQPHYQFARLFRAQSSSSTRF
ATASFHFDDLPPPLPLVLHPSFPPSHPPALVPEVALAGKSNVGKSTLLNA
LLSLSPSKRGAAAVGDKPGVTKSLDFYRVGPVSKPRLVVVDLPGYGFAYG
KAERIDQAQRLCLSYLRHRGHPLKRLLLLLDARHGLKQTDRHFLQQLYTP
PSSLPFSPSSSSPSVAYDSDHPTEEQSMSSSSSSLPPSLPPFRPPKLQLV
FTKCDLVPRDELAKRIGMVRKEIEGGREGGREGGRDLGRLPSLMVSAGRG
RKGITELQAELAAVLPTLPPSLPPSLPPFHPSSSASRGPGGEEGGRGGGG
GGRGKGRRREKEDNLSLSEGREEEQEKKEGRMREGEGEVVGPGVAAGRRE
VSGKGERNEEEGGREEEEGGREEEEEEGGICGRSVGKEEGGKEGTKEKGD
GKGGGGRRARDTRGEIEEP*
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mRNA from alignment at chr14:230636..233381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00600.1 ID=NO14G00600.1|Name=NO14G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2746bp|location=Sequence derived from alignment at chr14:230636..233381+ (Nannochloropsis oceanica)
GAAGGGTGACGCAAGGACCTCCACACCCTCTGCCCTCTGCTCTTGTGACC
ATCTCCTCGGGCTCCCATGCCCCCCAACAACCACCACTGCTTAACGAATG
CATATATCATATTGCTCATCATTCGTTTCAAGTGCGGATAAAGGCAACGG
GGCACCAGCAAGCTAATCAAATGTAAAACTCATAAAGCAAGATAGCGTGA
CCTCCCCCCACCCACTTACATCTTCAGGGCCTGCACCCGCGCCCATAGAG
AATGTTCCAGGGCACGGCCTTGGCACTGCGGCGGCGAATACCATTCAGCG
TCACCAGTAGCAGTTGCAGCAACAGTAGTTGCAGACCTGCAATTCGATGG
CTGTCTCTTCCTGCCCTTCCCCCCTCGCTTTCCTTCTCCCCCCGACTGTC
CCCACCCAACACGACTACAGCGGGATACGCCCAAGCCAGCAGTCCCTTCC
ACAAAAATAAAGCAGATTCACCAAGTAGGGAAAAAGAGGAAGGGGCAGGA
GCAGTCGGAGGAAAAGGAGAAAGTCTCCGCCAGCGTCTGAAGCATGCCCC
GATCGATCCCCGTCTTTACCAACACTTGGAGCGCCTCGGCCTCGGCAGTG
AGAGCACCATCCGACACAAAAAGCTCAAGAAACAACAGAAAAAGCGGAAG
TTGACTGTGGGGGAGCTGAGAGGGATTGATGCGCAGATCACGCGGGATTC
GATTCCCTATTTTCAGGCGGTGAGAAGGGAGGGAGGGAGGGATTTAGGGA
GGGAGGGGAGGGAGGGAGGTGGGGAGGGAGGAAGGAAAGAAAAATGGAGG
AAATCCAACTTTCCCCAAGGCACAAATCACATGAAAGGGATATAACTTGT
GGATAAAAAAAAGTGATTCCACTCAAATTTCATAACCCCCCTTCCCCCCC
CCCCCTTCCTTCCCTCCTTCCTTCCTTCCCTCTTTCTCAGAACCGTTTCA
GGCAATGCAAGCGAGCAGTGCGCAAAGAAAAACGACGCCTCATCCGGGAG
CTGGCCAACAACAAACACCTCCACCGCCGCTTTCCCTCCCCTTCCTCCTC
TGCTGCTACGGCCGCTGCTGCTGCCTTAGCGGGTGGTGCTACCGCAGGAG
CGGAAGGAGGGCGCATTCGTAGCCCCTCCTCCCCTGCTCCTCCCCCTCCT
TCCCTCCCTCCTCAACCACACTACCAATTCGCCCGGCTCTTTCGCGCGCA
GTCATCCTCCTCCACGCGCTTCGCCACTGCCTCCTTCCACTTCGACGACC
TCCCCCCTCCCCTCCCCCTCGTCCTCCACCCCTCCTTCCCTCCCTCTCAC
CCTCCTGCTCTCGTCCCCGAAGTGGCCTTGGCCGGAAAGAGTAATGTGGG
GAAGAGCACCCTGCTCAATGCCCTTCTATCCCTCTCGCCCAGCAAGAGGG
GAGCAGCCGCCGTGGGGGACAAGCCGGGGGTAAGAAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTACCTGATTGGTGTTGTT
GTGGAAGGAAGGTGACTGCCCGCTCTCCACCGAGAAACAGCAATGGCTTA
TAGGGTGAGCATGGGTTTAATGCGGGAAACAGAGAAGAGAAAGCAGGCAT
GTCACACGTATGATCCAACTCACACACCACCACCTCCTCCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCTCCCCTTCCTTACACGCTAGGTTACCA
AATCTCTGGATTTCTACCGCGTGGGGCCCGTGAGCAAGCCCCGCCTCGTG
GTGGTGGACTTACCAGGGTACGGATTCGCGTATGGGAAAGCGGAACGGAT
CGATCAAGCGCAGCGATTATGCCTCTCCTACCTCCGGCACCGAGGCCACC
CCCTCAAGCGCCTCCTCCTCCTCCTCGACGCCCGTCACGGCCTCAAGCAA
ACCGACCGTCACTTTCTCCAGCAGCTCTACACCCCTCCCTCCTCCTTGCC
TTTCTCCCCATCGTCCTCCTCCCCCTCGGTCGCGTACGATTCCGACCACC
CGACGGAGGAACAAAGCATGTCCTCCTCCTCGTCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCGCCCTCCCAAGCTGCAATTGGTGTTTACGAAATGCGA
CCTGGTGCCACGCGACGAGCTCGCGAAGCGCATCGGGATGGTACGAAAAG
AGATCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACTTGGGG
AGGTTACCGTCGTTGATGGTGAGCGCTGGGAGGGGACGGAAGGGAATCAC
TGAACTGCAGGCAGAGCTGGCGGCGGTCTTGCCTACCCTTCCTCCCTCCC
TTCCTCCTTCCCTCCCTCCTTTCCATCCATCTTCTTCCGCGTCTCGTGGC
CCCGGGGGGGAGGAGGGAGGGAGGGGAGGGGGAGGGGGAGGAAGGGGGAA
GGGAAGGAGGAGAGAGAAGGAAGACAATCTCAGTTTGAGCGAAGGGAGGG
AGGAAGAGCAAGAAAAGAAGGAAGGGAGGATGAGAGAGGGGGAAGGGGAG
GTGGTGGGGCCAGGAGTGGCAGCTGGTCGGAGAGAGGTGAGTGGGAAGGG
CGAGAGGAACGAGGAGGAGGGAGGAAGGGAGGAGGAGGAGGGAGGAAGGG
AGGAGGAGGAGGAGGAGGGAGGGATATGTGGGAGGAGCGTCGGGAAGGAG
GAGGGAGGGAAGGAAGGGACGAAGGAGAAGGGAGATGGGAAGGGGGGCGG
GGGGAGGAGGGCGAGGGATACGAGAGGAGAGATAGAGGAGCCTTAG
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Coding sequence (CDS) from alignment at chr14:230636..233381+

>NO14G00600.1 ID=NO14G00600.1|Name=NO14G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at chr14:230636..233381+ (Nannochloropsis oceanica)
ATGTTCCAGGGCACGGCCTTGGCACTGCGGCGGCGAATACCATTCAGCGT
CACCAGTAGCAGTTGCAGCAACAGTAGTTGCAGACCTGCAATTCGATGGC
TGTCTCTTCCTGCCCTTCCCCCCTCGCTTTCCTTCTCCCCCCGACTGTCC
CCACCCAACACGACTACAGCGGGATACGCCCAAGCCAGCAGTCCCTTCCA
CAAAAATAAAGCAGATTCACCAAGTAGGGAAAAAGAGGAAGGGGCAGGAG
CAGTCGGAGGAAAAGGAGAAAGTCTCCGCCAGCGTCTGAAGCATGCCCCG
ATCGATCCCCGTCTTTACCAACACTTGGAGCGCCTCGGCCTCGGCAGTGA
GAGCACCATCCGACACAAAAAGCTCAAGAAACAACAGAAAAAGCGGAAGT
TGACTGTGGGGGAGCTGAGAGGGATTGATGCGCAGATCACGCGGGATTCG
ATTCCCTATTTTCAGGCGAACCGTTTCAGGCAATGCAAGCGAGCAGTGCG
CAAAGAAAAACGACGCCTCATCCGGGAGCTGGCCAACAACAAACACCTCC
ACCGCCGCTTTCCCTCCCCTTCCTCCTCTGCTGCTACGGCCGCTGCTGCT
GCCTTAGCGGGTGGTGCTACCGCAGGAGCGGAAGGAGGGCGCATTCGTAG
CCCCTCCTCCCCTGCTCCTCCCCCTCCTTCCCTCCCTCCTCAACCACACT
ACCAATTCGCCCGGCTCTTTCGCGCGCAGTCATCCTCCTCCACGCGCTTC
GCCACTGCCTCCTTCCACTTCGACGACCTCCCCCCTCCCCTCCCCCTCGT
CCTCCACCCCTCCTTCCCTCCCTCTCACCCTCCTGCTCTCGTCCCCGAAG
TGGCCTTGGCCGGAAAGAGTAATGTGGGGAAGAGCACCCTGCTCAATGCC
CTTCTATCCCTCTCGCCCAGCAAGAGGGGAGCAGCCGCCGTGGGGGACAA
GCCGGGGGTTACCAAATCTCTGGATTTCTACCGCGTGGGGCCCGTGAGCA
AGCCCCGCCTCGTGGTGGTGGACTTACCAGGGTACGGATTCGCGTATGGG
AAAGCGGAACGGATCGATCAAGCGCAGCGATTATGCCTCTCCTACCTCCG
GCACCGAGGCCACCCCCTCAAGCGCCTCCTCCTCCTCCTCGACGCCCGTC
ACGGCCTCAAGCAAACCGACCGTCACTTTCTCCAGCAGCTCTACACCCCT
CCCTCCTCCTTGCCTTTCTCCCCATCGTCCTCCTCCCCCTCGGTCGCGTA
CGATTCCGACCACCCGACGGAGGAACAAAGCATGTCCTCCTCCTCGTCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCGCCCTCCCAAGCTGCAATTGGTG
TTTACGAAATGCGACCTGGTGCCACGCGACGAGCTCGCGAAGCGCATCGG
GATGGTACGAAAAGAGATCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGACTTGGGGAGGTTACCGTCGTTGATGGTGAGCGCTGGGAGGGGA
CGGAAGGGAATCACTGAACTGCAGGCAGAGCTGGCGGCGGTCTTGCCTAC
CCTTCCTCCCTCCCTTCCTCCTTCCCTCCCTCCTTTCCATCCATCTTCTT
CCGCGTCTCGTGGCCCCGGGGGGGAGGAGGGAGGGAGGGGAGGGGGAGGG
GGAGGAAGGGGGAAGGGAAGGAGGAGAGAGAAGGAAGACAATCTCAGTTT
GAGCGAAGGGAGGGAGGAAGAGCAAGAAAAGAAGGAAGGGAGGATGAGAG
AGGGGGAAGGGGAGGTGGTGGGGCCAGGAGTGGCAGCTGGTCGGAGAGAG
GTGAGTGGGAAGGGCGAGAGGAACGAGGAGGAGGGAGGAAGGGAGGAGGA
GGAGGGAGGAAGGGAGGAGGAGGAGGAGGAGGGAGGGATATGTGGGAGGA
GCGTCGGGAAGGAGGAGGGAGGGAAGGAAGGGACGAAGGAGAAGGGAGAT
GGGAAGGGGGGCGGGGGGAGGAGGGCGAGGGATACGAGAGGAGAGATAGA
GGAGCCTTAG
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Synonyms
Publications