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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr14 | genome | chr14:6062..8649 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00030.1 vs.
Match: EWM20383.1 (hypothetical protein Naga_100448g7 [Nannochloropsis gaditana]) HSP 1 Score: 219.9 bits (559), Expect = 1.800e-53 Identity = 146/237 (61.60%), Postives = 171/237 (72.15%), Query Frame = 0
Query: 300 MRAREGRRREIDGDVGVKNTEVKNQ--QLQQHHDHLEEVEEEEEAEEKKEEEEREDMN----------GVGEAESTFDCRRRRRREWWRGWRQVVGAERGVQDGKEEEEDEDGEVDNEEREDEEEDEEDGNVYGAVSRPWSWRVWRRKGVKVGEEEG-RKEGQRESPEQYSECKRVGKVINQGSKK----GEVENLLIMEKVNEVARLVVATLPDDLFVELAGFMKLPWDKDEEDLG 520
MRAREG+R+ + DVGV+N V+NQ Q QQH EE E+EEE E+KKE+EE+E GVGE E RRR +R RGWRQV G E GVQDGKEEEEDEDG+VD+E RE+E+E+EE GNVYGA+SRPWSWRV RR+ VKVG EEG R+EGQ ES EQYSE RVG IN+G KK GE +N M+K+ E A LVVATLPDDLFVELAGFM+LPWD+DE + G
Sbjct: 1 MRAREGKRKGVAVDVGVENVVVENQLQQQQQHQQQEEEEEKEEEDEKKKEKEEKEKEKEMEKKKEKRMGVGEEEEGILSRRRLQRGRCRGWRQVTGVEGGVQDGKEEEEDEDGDVDDERREEEDEEEEGGNVYGAISRPWSWRVRRRRMVKVGVEEGWREEGQGESAEQYSESGRVGG-INEGLKKYEKEGEEDNRKAMKKMGEGAHLVVATLPDDLFVELAGFMRLPWDEDEGEEG 236
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00030.1 ID=NO14G00030.1|Name=NO14G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2262bp
TGTTTGTGTCGATTCCCTTGGAACTTAGAGAACAGAGTAGAATGGCAGCT
GGCCAAGAGAGAGTGTGCACGCCATGCCTTCCATGCACACCCTTGCACTT
GCCTGCGTCATGACATTCACATTTGGTCACCAAAGCAGACGCTGAATGAT
GAGCCCAAAGCATTATAGTCACCCACGCTTACCCGTCGACAATCTCTCCC
GCTAATGAACGCAACCACAGGCGGACACACTCCGAGTTGTTGCTTGGTTT
TTGTCGCTTCTGCGTCAGACGCGACGCGCGCGGACAAGAGTGTGAAGCGC
CGCCCCGGTCGTGTGTTGTTGTGATAGCCAACCACACTCTCTGCGTTGCC
GTGCCCAGCTATCAAAGAGATTCAAGAAGAAATGCTGCTACGACCCTTCC
ACAAAGACCAGACGGCCCGCCTCGTGGAAGCCTGCCGGATCAATGACGTG
GTCTCCCTCGCCGCCATGTTGGCCGAAGACCCCTCTCTCCTTTCTTACGA
GAGCCAGCCCAAAGAGCGCAATCTCCTCCTCCTGGCCACGCGAGCCGGTA
GCCTTGACGTTGTCCACTGGCTCCTACTTCACCATGGCACAGCCCTTCCC
CTCTCCGTCCTTCCTTCCTCCTTTTCCTCCTCCTCCTCCTTCTCTTCCTC
TTCCCCCCCCCGCCTCATCAATATCGACAGCCAGGATCGAGAGGGGAAAA
GCGCCTTGAATCTGGCTTGTGGCTTCGTAGGCTGTCCGCGGTTGGTGTCA
TTGCTACTCGCGTATGGGGCAGATGCCACGCAGGCCGATGCGAGAGGCCT
CACCCCTTTGCTCACGGCTGCGTGGCAAGGACAGAGGGCGGCTGTGGAGG
CACTTCTGGAGTGGCACCGGAAGAAGAAGGAGGAGGTAGAGCAGAGAGGA
GTCAGAGGCGAAACGATTGAGGCCAGATTGAATCAGCAGATGTTGTCATC
ATTCCCGTATTCTGCTCCGCACGAAGGAAACCTGGTAGAAACCCACGGCC
AAAAGAGGGGAAGACAAAGCTCATTCCCCTCCCTCCCCCCTCTTTCACTC
CTTCTCTCCCAAACTGATGGACGCGGCCGCTCAGCGCTGTACCTGTCTGC
GGCCTACGGCCACAATGCCGTGGTGTCCCTCTTGCTGGCAATGGGCGCCG
ACCCGAGGGTGCGGTCGAAGGAAGGGAAGACGGCGAGGGACAAGGCGGAG
GCTCGGGGAGAGAAGGAGGTTGCAGGGCTGCTGAAGCAGTACGAAGAAGA
GCCAGGCAGGATAAGAATGCTTTGTGGAATGAGGGCGAGGGAGGGAAGGA
GGAGGGAGATCGATGGAGATGTCGGTGTGAAAAATACTGAGGTAAAAAAT
CAGCAGCTACAGCAGCATCACGACCACTTGGAGGAGGTGGAGGAGGAGGA
AGAGGCGGAAGAGAAGAAAGAGGAAGAGGAAAGAGAAGATATGAATGGAG
TCGGGGAAGCAGAGAGCACCTTTGATTGCAGGAGAAGGAGACGGCGGGAG
TGGTGGCGGGGCTGGCGGCAGGTGGTCGGCGCTGAAAGAGGGGTGCAGGA
TGGGAAGGAAGAGGAGGAGGACGAAGATGGAGAGGTAGACAATGAAGAAA
GAGAAGATGAGGAGGAAGATGAAGAGGACGGAAACGTGTACGGGGCAGTC
TCGCGGCCATGGTCGTGGCGGGTGTGGAGAAGAAAGGGGGTGAAAGTGGG
AGAAGAGGAAGGGAGAAAAGAAGGGCAAAGGGAGAGCCCAGAACAGTATT
CAGAGTGTAAAAGAGTAGGGAAGGTTATCAATCAAGGCTCGAAAAAGGGA
GAAGTGGAGAATCTGTTAATAATGGAGAAGGTGAATGAGGTGGCCCGTCT
GGTTGTGGCGACGCTGCCAGACGACCTCTTCGTGGAACTGGCAGGCTTCA
TGAAGCTGCCATGGGACAAAGACGAAGAGGACTTGGGAAGAGGGTAGAGA
ACAGAAGGAGCAGGTGAGTAATAGTTGAGCGGTAAGAGAGCCTCTAGATG
GAGAGGTCAGAAAGCAAGAAACAAGACCGAGTGGCAGGAAATAAAGATAG
GGGAGAGTGCCCGGGTATTCTGGTGGGTAAGGGGTGAGTTATTGTCCATG
GACAAAGAAGATCAAGGTTGGCTGACTTGCTGAGACGCCAGGCCGGAAAA
AAAGACTTCAAGAGGAGTGAAATGACCGAGAGGGGTGGAGGATAAAGGGA
TTAAAGAGGCTTGTAATGCTAGTAATTAGTTGATAGAAAAAATGGCAAGG
ATACCACACTCA back to topprotein sequence of NO14G00030.1 >NO14G00030.1-protein ID=NO14G00030.1-protein|Name=NO14G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MLLRPFHKDQTARLVEACRINDVVSLAAMLAEDPSLLSYESQPKERNLLL
LATRAGSLDVVHWLLLHHGTALPLSVLPSSFSSSSSFSSSSPPRLINIDS
QDREGKSALNLACGFVGCPRLVSLLLAYGADATQADARGLTPLLTAAWQG
QRAAVEALLEWHRKKKEEVEQRGVRGETIEARLNQQMLSSFPYSAPHEGN
LVETHGQKRGRQSSFPSLPPLSLLLSQTDGRGRSALYLSAAYGHNAVVSL
LLAMGADPRVRSKEGKTARDKAEARGEKEVAGLLKQYEEEPGRIRMLCGM
RAREGRRREIDGDVGVKNTEVKNQQLQQHHDHLEEVEEEEEAEEKKEEEE
REDMNGVGEAESTFDCRRRRRREWWRGWRQVVGAERGVQDGKEEEEDEDG
EVDNEEREDEEEDEEDGNVYGAVSRPWSWRVWRRKGVKVGEEEGRKEGQR
ESPEQYSECKRVGKVINQGSKKGEVENLLIMEKVNEVARLVVATLPDDLF
VELAGFMKLPWDKDEEDLGRG* back to topmRNA from alignment at chr14:6062..8649- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00030.1 ID=NO14G00030.1|Name=NO14G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2588bp|location=Sequence derived from alignment at chr14:6062..8649- (Nannochloropsis oceanica)
TGTTTGTGTCGATTCCCTTGGAACTTAGAGAACAGAGTAGAATGGCAGCT
GGCCAAGAGAGAGTGTGCACGCCATGCCTTCCATGCACACCCTTGCACTT
GCCTGCGTCATGACATTCACATTTGGTCACCAAAGCAGACGCTGAATGAT
GAGCCCAAAGCATTATAGTCACCCACGCTTACCCGTCGACAATCTCTCCC
GCTAATGAACGCAACCACAGGCGGACACACTCCGAGTTGTTGCTTGGTTT
TTGTCGCTTCTGCGTCAGACGCGACGCGCGCGGACAAGAGTGTGAAGCGC
CGCCCCGGTCGTGTGTTGTTGTGATAGCCAACCACACTCTCTGCGTTGCC
GTGCCCAGCTATCAAAGAGATTCAAGAAGGTATGTGTACACATGGATGCG
TCAGTAGTGTGCTGGTGATTGAGTTGGAGTGAGTGCTTGCTTCATGTCTT
CAAGAACAAGAAAGTCTGCCAGACGTCTCTTCAAAAATCACTTACTCTCT
TGGTTCCTACCACCACCATCCATCAACACCTTCATTTCCATAAAATCACT
CTTAGTGGAATTCAGCATGCCGCCTGAATTCTCCAGGGGGCACTTGGGCC
AGGAGAAACGACGGGCTATCTTCCATTATTGCTGGCCTGCTCACCAAGCT
ATTTTTTGTCTCGTCTCACCTCAACGCCCCCCGCATCCATTCCTCAACCC
ACCAGAAATGCTGCTACGACCCTTCCACAAAGACCAGACGGCCCGCCTCG
TGGAAGCCTGCCGGATCAATGACGTGGTCTCCCTCGCCGCCATGTTGGCC
GAAGACCCCTCTCTCCTTTCTTACGAGAGCCAGCCCAAAGAGCGCAATCT
CCTCCTCCTGGCCACGCGAGCCGGTAGCCTTGACGTTGTCCACTGGCTCC
TACTTCACCATGGCACAGCCCTTCCCCTCTCCGTCCTTCCTTCCTCCTTT
TCCTCCTCCTCCTCCTTCTCTTCCTCTTCCCCCCCCCGCCTCATCAATAT
CGACAGCCAGGATCGAGAGGGGAAAAGCGCCTTGAATCTGGCTTGTGGCT
TCGTAGGCTGTCCGCGGTTGGTGTCATTGCTACTCGCGTATGGGGCAGAT
GCCACGCAGGCCGATGCGAGAGGCCTCACCCCTTTGCTCACGGCTGCGTG
GCAAGGACAGAGGGCGGCTGTGGAGGCACTTCTGGAGTGGCACCGGAAGA
AGAAGGAGGAGGTAGAGCAGAGAGGAGTCAGAGGCGAAACGATTGAGGCC
AGATTGAATCAGCAGATGTTGTCATCATTCCCGTATTCTGCTCCGCACGA
AGGAAACCTGGTAGAAACCCACGGCCAAAAGAGGGGAAGACAAAGCTCAT
TCCCCTCCCTCCCCCCTCTTTCACTCCTTCTCTCCCAAACTGATGGACGC
GGCCGCTCAGCGCTGTACCTGTCTGCGGCCTACGGCCACAATGCCGTGGT
GTCCCTCTTGCTGGCAATGGGCGCCGACCCGAGGGTGCGGTCGAAGGAAG
GGAAGACGGCGAGGGACAAGGCGGAGGCTCGGGGAGAGAAGGAGGTTGCA
GGGCTGCTGAAGCAGTACGAAGAAGAGCCAGGCAGGATAAGAATGCTTTG
TGGAATGAGGGCGAGGGAGGGAAGGAGGAGGGAGATCGATGGAGATGTCG
GTGTGAAAAATACTGAGGTAAAAAATCAGCAGCTACAGCAGCATCACGAC
CACTTGGAGGAGGTGGAGGAGGAGGAAGAGGCGGAAGAGAAGAAAGAGGA
AGAGGAAAGAGAAGATATGAATGGAGTCGGGGAAGCAGAGAGCACCTTTG
ATTGCAGGAGAAGGAGACGGCGGGAGTGGTGGCGGGGCTGGCGGCAGGTG
GTCGGCGCTGAAAGAGGGGTGCAGGATGGGAAGGAAGAGGAGGAGGACGA
AGATGGAGAGGTAGACAATGAAGAAAGAGAAGATGAGGAGGAAGATGAAG
AGGACGGAAACGTGTACGGGGCAGTCTCGCGGCCATGGTCGTGGCGGGTG
TGGAGAAGAAAGGGGGTGAAAGTGGGAGAAGAGGAAGGGAGAAAAGAAGG
GCAAAGGGAGAGCCCAGAACAGTATTCAGAGTGTAAAAGAGTAGGGAAGG
TTATCAATCAAGGCTCGAAAAAGGGAGAAGTGGAGAATCTGTTAATAATG
GAGAAGGTGAATGAGGTGGCCCGTCTGGTTGTGGCGACGCTGCCAGACGA
CCTCTTCGTGGAACTGGCAGGCTTCATGAAGCTGCCATGGGACAAAGACG
AAGAGGACTTGGGAAGAGGGTAGAGAACAGAAGGAGCAGGTGAGTAATAG
TTGAGCGGTAAGAGAGCCTCTAGATGGAGAGGTCAGAAAGCAAGAAACAA
GACCGAGTGGCAGGAAATAAAGATAGGGGAGAGTGCCCGGGTATTCTGGT
GGGTAAGGGGTGAGTTATTGTCCATGGACAAAGAAGATCAAGGTTGGCTG
ACTTGCTGAGACGCCAGGCCGGAAAAAAAGACTTCAAGAGGAGTGAAATG
ACCGAGAGGGGTGGAGGATAAAGGGATTAAAGAGGCTTGTAATGCTAGTA
ATTAGTTGATAGAAAAAATGGCAAGGATACCACACTCA back to topCoding sequence (CDS) from alignment at chr14:6062..8649- >NO14G00030.1 ID=NO14G00030.1|Name=NO14G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at chr14:6062..8649- (Nannochloropsis oceanica)
ATGCTGCTACGACCCTTCCACAAAGACCAGACGGCCCGCCTCGTGGAAGC
CTGCCGGATCAATGACGTGGTCTCCCTCGCCGCCATGTTGGCCGAAGACC
CCTCTCTCCTTTCTTACGAGAGCCAGCCCAAAGAGCGCAATCTCCTCCTC
CTGGCCACGCGAGCCGGTAGCCTTGACGTTGTCCACTGGCTCCTACTTCA
CCATGGCACAGCCCTTCCCCTCTCCGTCCTTCCTTCCTCCTTTTCCTCCT
CCTCCTCCTTCTCTTCCTCTTCCCCCCCCCGCCTCATCAATATCGACAGC
CAGGATCGAGAGGGGAAAAGCGCCTTGAATCTGGCTTGTGGCTTCGTAGG
CTGTCCGCGGTTGGTGTCATTGCTACTCGCGTATGGGGCAGATGCCACGC
AGGCCGATGCGAGAGGCCTCACCCCTTTGCTCACGGCTGCGTGGCAAGGA
CAGAGGGCGGCTGTGGAGGCACTTCTGGAGTGGCACCGGAAGAAGAAGGA
GGAGGTAGAGCAGAGAGGAGTCAGAGGCGAAACGATTGAGGCCAGATTGA
ATCAGCAGATGTTGTCATCATTCCCGTATTCTGCTCCGCACGAAGGAAAC
CTGGTAGAAACCCACGGCCAAAAGAGGGGAAGACAAAGCTCATTCCCCTC
CCTCCCCCCTCTTTCACTCCTTCTCTCCCAAACTGATGGACGCGGCCGCT
CAGCGCTGTACCTGTCTGCGGCCTACGGCCACAATGCCGTGGTGTCCCTC
TTGCTGGCAATGGGCGCCGACCCGAGGGTGCGGTCGAAGGAAGGGAAGAC
GGCGAGGGACAAGGCGGAGGCTCGGGGAGAGAAGGAGGTTGCAGGGCTGC
TGAAGCAGTACGAAGAAGAGCCAGGCAGGATAAGAATGCTTTGTGGAATG
AGGGCGAGGGAGGGAAGGAGGAGGGAGATCGATGGAGATGTCGGTGTGAA
AAATACTGAGGTAAAAAATCAGCAGCTACAGCAGCATCACGACCACTTGG
AGGAGGTGGAGGAGGAGGAAGAGGCGGAAGAGAAGAAAGAGGAAGAGGAA
AGAGAAGATATGAATGGAGTCGGGGAAGCAGAGAGCACCTTTGATTGCAG
GAGAAGGAGACGGCGGGAGTGGTGGCGGGGCTGGCGGCAGGTGGTCGGCG
CTGAAAGAGGGGTGCAGGATGGGAAGGAAGAGGAGGAGGACGAAGATGGA
GAGGTAGACAATGAAGAAAGAGAAGATGAGGAGGAAGATGAAGAGGACGG
AAACGTGTACGGGGCAGTCTCGCGGCCATGGTCGTGGCGGGTGTGGAGAA
GAAAGGGGGTGAAAGTGGGAGAAGAGGAAGGGAGAAAAGAAGGGCAAAGG
GAGAGCCCAGAACAGTATTCAGAGTGTAAAAGAGTAGGGAAGGTTATCAA
TCAAGGCTCGAAAAAGGGAGAAGTGGAGAATCTGTTAATAATGGAGAAGG
TGAATGAGGTGGCCCGTCTGGTTGTGGCGACGCTGCCAGACGACCTCTTC
GTGGAACTGGCAGGCTTCATGAAGCTGCCATGGGACAAAGACGAAGAGGA
CTTGGGAAGAGGGTAG back to top
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