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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:2645..6061 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00020.4 vs.
Match: EWM22869.1 (major facilitator superfamily [Nannochloropsis gaditana]) HSP 1 Score: 160.6 bits (405), Expect = 5.400e-36 Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 0
Query: 64 LAYWRWLPPSVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNGGLALFPLLAAAIYKAADSRYLLHVELLFVCLAIVGVFCGLLLNFLDAR 165
+ YWR L P+VPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQN GLALFPL+AAAIYKAA S Y+ HVELLFV LA+VG+ GL LN LD+R
Sbjct: 1 MPYWRSLSPAVPLVGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQNAGLALFPLMAAAIYKAAGSEYIPHVELLFVYLAVVGLAFGLWLNVLDSR 101
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00020.4 ID=NO14G00020.4|Name=NO14G00020.4|organism=Nannochloropsis oceanica|type=mRNA|length=2806bp CAAACCTTTGCACTGTAGATGGATTAATATCTGCTGATGTTCCATGAATA ATTGTTTGTTTCGGAGTCTTTTCTCACAATTGCTTGACGGCAGACCCGCA GGCCAAAGCTGCTTTCAAGGACCGGGACCGGGTTAGGGTTAGGGTTAGGT AAGGGGGGGGGGCGTGACGAGAGGAGGACGCATAGGCTAACCCCATCCAT CCCTTTTATCCTCTCTCCTTCTCTCCCTTTCTTCCCCACTTTTTCGCTCT CTCCTGTCGTAGGAGCGCGACTACTTCCGCATCCCCCCCCCCTCCTGCAC CCTCACCAACAGCAGCGCCTGCCAGTCGCCCTCCAACCAGCCCTCTTCTG ACTGCCCATCCTCATCGAATTTCCAGCCGCCTCTGCCTGACATGATCCAA GTGTAGGCTGGTTGGAGGGTAGGGAGGGGAAGACGGAGCGGAGGGAGGTG TATAGGACAGGCAGTGACGTCATTGCTCCGCCGACGAGTTGGGCGGGCTG GACGCCTGTACTGAGGCGCAGCTCTGATTCCTTTCCCTTCCTCCCTTTTC CCGCCCCTTCGTTCTCAGGAAAGACATCGACTGCTCCCTGGAGGAGTGGA GCGGGCTCGGTGCTTGCACTCAGGTGTTCTGTGAGGTGCAAAAGACAGGC ATTAGGCAGAGCGACAGGGTGAGAAGGGGAGAAGAAGGGGAGGGTGGGGC TGGGCAGAGGGAGGACCAGGACTGAGATACCATGAGGGAGGAGGAGGGCG ACATGCCGTGCATATTCTCATGCGGGTGCAGACCACCGATCCTTTCAACC CCTCCCCCCCTTCATCTCTCCTCCCCTACATCATGTCCATCCCCTACACC ATCTCTGCCGTCCTCTCTCCCTTTCTGGGCTTGGCCGTCGATCGCTTCGG TCGGCGTGCTGTGGTGATCGCTCTGGCGCCCGTGGTGCTTATTGGCGTGC ATCTTTCGCTGGCATACTGGCGTTGGCTTCCTCCGTCGGTGCCTCTCGTC GGACAAGGCCTAGCTTACAGCGCCTTCGCGGCGGTTCTCTGGCCCTCCGT CCCTTTCACAGTCCCCGAGGATCGGGTCGGGGTGGCGTATGGCCTCACCA CCGCCATTCAAAATGGAGGCCTGGCCCTTTTTCCTCTCTTGGCGGCGGCT ATCTACAAGGCCGCCGATTCTCGCTACCTTCTTCATGTGGAGCTTTTGTT TGTGTGCTTGGCTATAGTGGGCGTCTTCTGTGGTCTACTACTCAACTTCC TGGATGCACGGTACGTACCAAGGGAGGGGATGGAAAGAGTGGAGGAACAG GTAGATCCAACCGACCTTTGGCTGTGTCCCGAGCACCTTGTGAGGACTTT TATTCCTTCTTCTTCCTTTGCCCCTTTCATCCCTCACCTCCTTTCTTCTA CCGCAGCGCCTGTCACATCCTGAACCGACCCCAGCCCGCTGGAGGAGGAG GAGGGCGGGGCGGGGAAGAAAGACCTGGAGCGAAGAGCAACAAGAAAAGG GAGGCATTGCTCCATGAGGTAGTGGAAGGAGTGAAGGTGCCGATATCTTC TTCTTCTTCCCCCATCTACGTGTAGGATAGCTTGAATCTGACTTCTGTTA AAGGAAAGGGCTCTTATGTATGTAAAACCCAGCCATGCATGACAAAACTG TGAGTGTAAGGTAAAGACATGGATAATAGCAGACGAGGGCAACAGCGTGA GCGCAGGACCAAAGGGACGGAAGAAGCGCATGAGGATGGAGGAACCGGTT GTGACTTGTCCTTCACATTGACATATCACAAAACACAAGGCAGAGGAGCA ACGAGAACAAAGAGAGAGAGGTATTACGATTTAACTTTTATTTCCTCCTA AGCAATAGCAATGTAGTCATGTACCTGTACATTCAGACGGGATAGACGGG TGCAGTGAACTGGGTGGCCAGGCCTCTTCACCAAAGTACTAACAGTACAC AAGTAGCATTGAATCCCTTGCCTCCCTCCACTTCTCCATCTCTTCCTCTT GCAATTATCACTTTCCCATAACCTTCTTTACTGGTAGTATTTGGTTCCTT TCGGTCAATTAATAGTGGTTTTGCTCGGGGGCGTCACGCCATAGCAGATA AGAGCTGACATGAGCAGCCACTCTTCCTCTTGCTTGAGCTCTTGCGAATA ATGAACAAGAAAATTCCCCTTGCTTTTCCTCGCCCTTGAGGACACCCTCC CTCCCATTGCGCGCTGCTTCAGCAACTCAGCGATTTGAGCCAGCCGGAAA CTACCACGACATGTCCAGTTCTTGAGTTTGTCCTCCGAATATGCTTTGCT CTGGTCCACGGCGCCGCCCCCAGAGACCACCTCCGTCCCAGAGACGGAGG GAGGCAGGGAGGTAAGGGCGGAAGGGACGGAGGAGTGGACGTGGAGATGC CTCGGGTGGTGACATCGACACGAATTCTGACGGCATTAGCCCTGCGGATA TGGCAGCGCAAGATCGGCCGGGTAGGGTTAACGCCGGGGGAGGAGGAGGG GAATTAGAAAAGTGGGCGAATCTCATGCAGGATGATTTCAAGGCGATGTG TATGTGTGGAAGTGGGAAGATTTATTGTTATACCTGGCCACATCCACCTC TTCCTTTTGAGTGGCATGATGGTTTGATAGCGGTGAGCACTACTATCACC ATCATCAGTGGCAGAGCATCACCACCCCAGGCGGCAGCTAGGCAGCAGGA GCAGCGGCAGTTTCACGACATATATTCTTTGGCGTTCCTTGACAGTGTCT CTCTAAGGTTTCGATCAGAGGAATACCATAATATGTTAAATGATGGAGAA AAGGCC back to topprotein sequence of NO14G00020.4 >NO14G00020.4-protein ID=NO14G00020.4-protein|Name=NO14G00020.4|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp MRVQTTDPFNPSPPSSLLPYIMSIPYTISAVLSPFLGLAVDRFGRRAVVI ALAPVVLIGVHLSLAYWRWLPPSVPLVGQGLAYSAFAAVLWPSVPFTVPE DRVGVAYGLTTAIQNGGLALFPLLAAAIYKAADSRYLLHVELLFVCLAIV GVFCGLLLNFLDARYVPREGMERVEEQVDPTDLWLCPEHLVRTFIPSSSF APFIPHLLSSTAAPVTS* back to topmRNA from alignment at chr14:2645..6061- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00020.4 ID=NO14G00020.4|Name=NO14G00020.4|organism=Nannochloropsis oceanica|type=mRNA|length=3417bp|location=Sequence derived from alignment at chr14:2645..6061- (Nannochloropsis oceanica) CAAACCTTTGCACTGTAGATGGATTAATATCTGCTGATGTTCCATGAATA
ATTGTTTGTTTCGGAGTCTTTTCTCACAATTGCTTGACGGCAGACCCGCA
GGCCAAAGCTGCTTTCAAGGACCGGGACCGGGTTAGGGTTAGGGTTAGGT
AAGGGGGGGGGGCGTGACGAGAGGAGGACGCATAGGCTAACCCCATCCAT
CCCTTTTATCCTCTCTCCTTCTCTCCCTTTCTTCCCCACTTTTTCGCTCT
CTCCTGTCGTAGGAGCGCGACTACTTCCGCATCCCCCCCCCCTCCTGCAC
CCTCACCAACAGCAGCGCCTGCCAGTCGCCCTCCAACCAGCCCTCTTCTG
ACTGCCCATCCTCATCGAATTTCCAGCCGCCTCTGCCTGACATGATCCAA
GTGTAGGCTGGTTGGAGGGTAGGGAGGGGAAGACGGAGCGGAGGGAGGTG
TATAGGACAGGCAGTGACGTCATTGCTCCGCCGACGAGTTGGGCGGGCTG
GACGCCTGTACTGAGGCGCAGCTCTGATTCCTTTCCCTTCCTCCCTTTTC
CCGCCCCTTCGTTCTCAGGAAAGACATCGACTGCTCCCTGGAGGAGTGGA
GCGGGCTCGGTGCTTGCACTCAGGTGTTCTGTGAGGTGCAAAAGACAGGC
ATTAGGCAGAGCGACAGGGTGAGAAGGGGAGAAGAAGGGGAGGGTGGGGC
TGGGCAGAGGGAGGACCAGGACTGAGATACCATGAGGGAGGAGGAGGGCG
ACATGCCGTGCATATTCTCATGCGGGTGCAGACCACCGATCCTTTCAACC
CCTCCCCCCCTTCATCTCTCCTCCCCTACATCATGTCCATCCCCTACACC
ATCTCTGCCGTCCTCTCTCCCTTTCTGGGCTTGGCCGTCGATCGCTTCGG
TCGGCGTGCTGTGGTGATCGCTCTGGCGCCCGTGGTGCTTATTGGCGTGC
ATCTTTCGCTGGGTAGGTAGGGAGGGAGGAAGGGAAGGGGAGGGAGGGAG
GAAGGAAGCGGGATGAAGGCCCATGTTGTGGTACCGGCACGCTGCCAACC
ATCGTATTAAAAGGCCTGCCTCTCGATGAGGAGAGGAGCAGGCGAGGAAG
GAAGGAAGGAGGGAGGGAGGGATGGGGGAAAACGGTGATAACTAGAAAGC
ACACACCTCACCGCTTGCAGACATTCCTACACCCGTGTACACATCTCACA
TACACATGTATCATATGTATCTTACCTACATGTATCGCACATTTCACACA
TATACCCGGCATCTCACATGTACGTAGCATATCTCACACTTATACTATAT
TAATGTCTTCCACACACATATTACATCTGGCACTCGTACATAATAAAGCA
TACTGGCGTTGGCTTCCTCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGC
TTACAGGTAAGCGACCTCTCTGCCGCGTTTCCCTTTGCTGCTCTACGTAT
TTCCAACACTCTTCTCTCTTCCCCTACTCCCCTCCCTCAGCGCCTTCGCG
GCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGGATCGGGTCGG
GGTGGCGTATGGCCTCACCACCGCCATTCAAAATGGAGGCCTGGCCCTTT
TTCCTCTCTTGGCGGCGGCTATCTACAAGGTAGGAGGAATGGGGAAGGAG
TAAGGGTGGGAATGCCGACGGGGATTAGGGATAAACGCACTGCTGTAATT
TGCTAAGTTTGCTTTCTCCCACTCTTTTCCCGCTTTTTAACTTCCAATCA
TCCCTCCCTTTTTCGCTCAGGCCGCCGATTCTCGCTACCTTCTTCATGTG
GAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGTCTTCTGTGGTCTACT
ACTCAACTTCCTGGATGCACGGTACGTACCAAGGGAGGGGATGGAAAGAG
TGGAGGAACAGGTAGATCCAACCGACCTTTGGCTGTGTCCCGAGCACCTT
GTGAGGACTTTTATTCCTTCTTCTTCCTTTGCCCCTTTCATCCCTCACCT
CCTTTCTTCTACCGCAGCGCCTGTCACATCCTGAACCGACCCCAGCCCGC
TGGAGGAGGAGGAGGGCGGGGCGGGGAAGAAAGACCTGGAGCGAAGAGCA
ACAAGAAAAGGGAGGCATTGCTCCATGAGGTAGTGGAAGGAGTGAAGGTG
CCGATATCTTCTTCTTCTTCCCCCATCTACGTGTAGGATAGCTTGAATCT
GACTTCTGTTAAAGGAAAGGGCTCTTATGTATGTAAAACCCAGCCATGCA
TGACAAAACTGTGAGTGTAAGGTAAAGACATGGATAATAGCAGACGAGGG
CAACAGCGTGAGCGCAGGACCAAAGGGACGGAAGAAGCGCATGAGGATGG
AGGAACCGGTTGTGACTTGTCCTTCACATTGACATATCACAAAACACAAG
GCAGAGGAGCAACGAGAACAAAGAGAGAGAGGTATTACGATTTAACTTTT
ATTTCCTCCTAAGCAATAGCAATGTAGTCATGTACCTGTACATTCAGACG
GGATAGACGGGTGCAGTGAACTGGGTGGCCAGGCCTCTTCACCAAAGTAC
TAACAGTACACAAGTAGCATTGAATCCCTTGCCTCCCTCCACTTCTCCAT
CTCTTCCTCTTGCAATTATCACTTTCCCATAACCTTCTTTACTGGTAGTA
TTTGGTTCCTTTCGGTCAATTAATAGTGGTTTTGCTCGGGGGCGTCACGC
CATAGCAGATAAGAGCTGACATGAGCAGCCACTCTTCCTCTTGCTTGAGC
TCTTGCGAATAATGAACAAGAAAATTCCCCTTGCTTTTCCTCGCCCTTGA
GGACACCCTCCCTCCCATTGCGCGCTGCTTCAGCAACTCAGCGATTTGAG
CCAGCCGGAAACTACCACGACATGTCCAGTTCTTGAGTTTGTCCTCCGAA
TATGCTTTGCTCTGGTCCACGGCGCCGCCCCCAGAGACCACCTCCGTCCC
AGAGACGGAGGGAGGCAGGGAGGTAAGGGCGGAAGGGACGGAGGAGTGGA
CGTGGAGATGCCTCGGGTGGTGACATCGACACGAATTCTGACGGCATTAG
CCCTGCGGATATGGCAGCGCAAGATCGGCCGGGTAGGGTTAACGCCGGGG
GAGGAGGAGGGGAATTAGAAAAGTGGGCGAATCTCATGCAGGATGATTTC
AAGGCGATGTGTATGTGTGGAAGTGGGAAGATTTATTGTTATACCTGGCC
ACATCCACCTCTTCCTTTTGAGTGGCATGATGGTTTGATAGCGGTGAGCA
CTACTATCACCATCATCAGTGGCAGAGCATCACCACCCCAGGCGGCAGCT
AGGCAGCAGGAGCAGCGGCAGTTTCACGACATATATTCTTTGGCGTTCCT
TGACAGTGTCTCTCTAAGGTTTCGATCAGAGGAATACCATAATATGTTAA
ATGATGGAGAAAAGGCC back to topCoding sequence (CDS) from alignment at chr14:2645..6061- >NO14G00020.4 ID=NO14G00020.4|Name=NO14G00020.4|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr14:2645..6061- (Nannochloropsis oceanica) ATGCGGGTGCAGACCACCGATCCTTTCAACCCCTCCCCCCCTTCATCTCT CCTCCCCTACATCATGTCCATCCCCTACACCATCTCTGCCGTCCTCTCTC CCTTTCTGGGCTTGGCCGTCGATCGCTTCGGTCGGCGTGCTGTGGTGATC GCTCTGGCGCCCGTGGTGCTTATTGGCGTGCATCTTTCGCTGGCATACTG GCGTTGGCTTCCTCCGTCGGTGCCTCTCGTCGGACAAGGCCTAGCTTACA GCGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAG GATCGGGTCGGGGTGGCGTATGGCCTCACCACCGCCATTCAAAATGGAGG CCTGGCCCTTTTTCCTCTCTTGGCGGCGGCTATCTACAAGGCCGCCGATT CTCGCTACCTTCTTCATGTGGAGCTTTTGTTTGTGTGCTTGGCTATAGTG GGCGTCTTCTGTGGTCTACTACTCAACTTCCTGGATGCACGGTACGTACC AAGGGAGGGGATGGAAAGAGTGGAGGAACAGGTAGATCCAACCGACCTTT GGCTGTGTCCCGAGCACCTTGTGAGGACTTTTATTCCTTCTTCTTCCTTT GCCCCTTTCATCCCTCACCTCCTTTCTTCTACCGCAGCGCCTGTCACATC CTGA back to top
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