NO13G03390.1, NO13G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03390.1
Unique NameNO13G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length816
Alignment locationchr13:1010384..1011485 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1010384..1011485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03390NO13G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03390.1NO13G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03390.1.cds1NO13G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03390.1.cds2NO13G03390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03390.1.cds3NO13G03390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03390.1 ID=NO13G03390.1|Name=NO13G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
ATGACGGAAGACGACCGCTTACTCCACAAATGGCGAAACTACTACATTAA
CCCGTCCGCTCGTCCCCCTTGGGAAACCTCCTCCCCTTCATCCTTCGTCC
TTGCCCTTCTTCCCTCCTTGCCTAAAGGGTCCAAGACTCTGGAGCTAGGC
TGCGGCTTGGGGCTGACGTCGATTCATCTCGCTCATGCCTGCGAATGCCG
CGCAACGGCCGTTGACCTGGTCCCCGAAGCGGTGGCTCAAGGACGAGCGA
AGGAAAGAGAGCTTTATCCTCCAGAGAGGGAGGAAGGGGTGGAGGGAGGA
AGGATAGAGGGAAGCAGGGGTGATGATGATCGATCGGCTTTTACCTCAGA
AGGAGAGAGGGTAGGAGGAGGGGTGAAGTGGCTTGTAGGTGATCTCTTCA
CTCTCCTCGCCTCTCCACGCCACAAGGGACAGTACGATCTGATTATAGAC
ATCCAATGCCTGCACACCTTCCCTTCCTCTCTCCCTCCCTTCCCCTCTTC
CTCGCCTTCTCCTTCACCTCCACGCACCCGCTTGGCGCTTGCTCGACTCA
CTCACTCCCTTCTGAAGCCGGGCGGGCGGGCACTAATCGTGGTTGGGAAC
GACAAAGAGAAATACGGAGGTCAGCAAGGAAAGATGGGGCCATCGTTGCT
ATCGAAGGAGGAAGTGATGGAGTTTTGTCGCGAGGGAGGGTTGGAGGAAG
GGGGGGATGAAGGGGAGGGGCTGAGGGAAGGTAGGTTTGAGCGGACGGAG
GCATATGGGGAGCATCCGCCTTGGTGCTGGGTGGGGGTGTTTAGGAGGAA
GGAGGACAAGAAGTGA
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protein sequence of NO13G03390.1

>NO13G03390.1-protein ID=NO13G03390.1-protein|Name=NO13G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MTEDDRLLHKWRNYYINPSARPPWETSSPSSFVLALLPSLPKGSKTLELG
CGLGLTSIHLAHACECRATAVDLVPEAVAQGRAKERELYPPEREEGVEGG
RIEGSRGDDDRSAFTSEGERVGGGVKWLVGDLFTLLASPRHKGQYDLIID
IQCLHTFPSSLPPFPSSSPSPSPPRTRLALARLTHSLLKPGGRALIVVGN
DKEKYGGQQGKMGPSLLSKEEVMEFCREGGLEEGGDEGEGLREGRFERTE
AYGEHPPWCWVGVFRRKEDKK*
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mRNA from alignment at chr13:1010384..1011485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03390.1 ID=NO13G03390.1|Name=NO13G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp|location=Sequence derived from alignment at chr13:1010384..1011485+ (Nannochloropsis oceanica)
ATGACGGAAGACGACCGCTTACTCCACAAATGGCGAAACTACTACATTAA
CCCGTCCGCTCGTCCCCCTTGGGAAACCTCCTCCCCTTCATCCTTCGTCC
TTGCCCTTCTTCCCTCCTTGCCTAAAGGTACGTCGTCGGTTCTAATACCG
GCATCCTCTTCCCTTCCCTTCACGTTTCCCTTGCTCTGCGTACACCCACA
GGGTCCAAGACTCTGGAGCTAGGCTGCGGCTTGGGGCTGACGTCGATTCA
TCTCGGTACGAGGCAGGGAAAAGGGGGGGGAGATGAACGAAAGTAAAGGA
AAAGGAGAAGGAAGTTCTCGAATACTTGTTTCTATTTTTCTTCTTGTCCA
CTGCTATCTCTATTTTTCACTTTCCCCATACTGCAAAAATTCTACTGATT
TAATACCTGAAGAGTGTTCTTCCTTCCTCACTCACTCTTTCTCTCCCTTC
CTCCCTCGTTCTCCCAGCTCATGCCTGCGAATGCCGCGCAACGGCCGTTG
ACCTGGTCCCCGAAGCGGTGGCTCAAGGACGAGCGAAGGAAAGAGAGCTT
TATCCTCCAGAGAGGGAGGAAGGGGTGGAGGGAGGAAGGATAGAGGGAAG
CAGGGGTGATGATGATCGATCGGCTTTTACCTCAGAAGGAGAGAGGGTAG
GAGGAGGGGTGAAGTGGCTTGTAGGTGATCTCTTCACTCTCCTCGCCTCT
CCACGCCACAAGGGACAGTACGATCTGATTATAGACATCCAATGCCTGCA
CACCTTCCCTTCCTCTCTCCCTCCCTTCCCCTCTTCCTCGCCTTCTCCTT
CACCTCCACGCACCCGCTTGGCGCTTGCTCGACTCACTCACTCCCTTCTG
AAGCCGGGCGGGCGGGCACTAATCGTGGTTGGGAACGACAAAGAGAAATA
CGGAGGTCAGCAAGGAAAGATGGGGCCATCGTTGCTATCGAAGGAGGAAG
TGATGGAGTTTTGTCGCGAGGGAGGGTTGGAGGAAGGGGGGGATGAAGGG
GAGGGGCTGAGGGAAGGTAGGTTTGAGCGGACGGAGGCATATGGGGAGCA
TCCGCCTTGGTGCTGGGTGGGGGTGTTTAGGAGGAAGGAGGACAAGAAGT
GA
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Coding sequence (CDS) from alignment at chr13:1010384..1011485+

>NO13G03390.1 ID=NO13G03390.1|Name=NO13G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr13:1010384..1011485+ (Nannochloropsis oceanica)
ATGACGGAAGACGACCGCTTACTCCACAAATGGCGAAACTACTACATTAA
CCCGTCCGCTCGTCCCCCTTGGGAAACCTCCTCCCCTTCATCCTTCGTCC
TTGCCCTTCTTCCCTCCTTGCCTAAAGGGTCCAAGACTCTGGAGCTAGGC
TGCGGCTTGGGGCTGACGTCGATTCATCTCGCTCATGCCTGCGAATGCCG
CGCAACGGCCGTTGACCTGGTCCCCGAAGCGGTGGCTCAAGGACGAGCGA
AGGAAAGAGAGCTTTATCCTCCAGAGAGGGAGGAAGGGGTGGAGGGAGGA
AGGATAGAGGGAAGCAGGGGTGATGATGATCGATCGGCTTTTACCTCAGA
AGGAGAGAGGGTAGGAGGAGGGGTGAAGTGGCTTGTAGGTGATCTCTTCA
CTCTCCTCGCCTCTCCACGCCACAAGGGACAGTACGATCTGATTATAGAC
ATCCAATGCCTGCACACCTTCCCTTCCTCTCTCCCTCCCTTCCCCTCTTC
CTCGCCTTCTCCTTCACCTCCACGCACCCGCTTGGCGCTTGCTCGACTCA
CTCACTCCCTTCTGAAGCCGGGCGGGCGGGCACTAATCGTGGTTGGGAAC
GACAAAGAGAAATACGGAGGTCAGCAAGGAAAGATGGGGCCATCGTTGCT
ATCGAAGGAGGAAGTGATGGAGTTTTGTCGCGAGGGAGGGTTGGAGGAAG
GGGGGGATGAAGGGGAGGGGCTGAGGGAAGGTAGGTTTGAGCGGACGGAG
GCATATGGGGAGCATCCGCCTTGGTGCTGGGTGGGGGTGTTTAGGAGGAA
GGAGGACAAGAAGTGA
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Synonyms
Publications