NO13G03280.1, NO13G03280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G03280.1
Unique Name	NO13G03280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1464
Alignment location	chr13:961542..965465 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:961542..965465 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G03280.1 vs.
Match: GAX82401.1 (hypothetical protein CEUSTIGMA_g9829.t1 [Chlamydomonas eustigma])

HSP 1 Score: 219.5 bits (558), Expect = 2.200e-53
Identity = 98/141 (69.50%), Postives = 117/141 (82.98%), Query Frame = 0

Query:  159 STSKRRDMDLMKLMMSDFQVHIPDESRLHEFWVVLHGPAETPYHGGQWKVHVALPPDYPFKSPSIGFTNRLFHPNVDEMSGSVCLDVINQAWTPMYDLVNVFEAFLPQLLRYPNPSDPLNPDAAHLLLRDPEKYHDRVQDY 300
            S SKRRDMD+MKLMMSD++V + DE+   +F V+ HGP ++PY GG WKVHV LP  YP+KSPSIGF NR+FHPNVDE +GSVCLDVINQ W+PM+DLVNVFE FLPQLL YPNPSDPLN +AA LL+R+P+ Y  RV+DY
Sbjct:    3 SPSKRRDMDVMKLMMSDWKVELTDENNTSDFCVIFHGPKDSPYEGGVWKVHVELPEAYPYKSPSIGFVNRIFHPNVDENAGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAASLLMREPQSYAQRVRDY 143

The following BLAST results are available for this feature:

BLAST of NO13G03280.1 vs.

BLAST of NO13G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAX82401.1	2.200e-53	69.50	hypothetical protein CEUSTIGMA_g9829.t1 [Chlamydom...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G03280	NO13G03280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G03280.1	NO13G03280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G03280.1.cds1	NO13G03280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds2	NO13G03280.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds3	NO13G03280.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds4	NO13G03280.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds5	NO13G03280.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds6	NO13G03280.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds7	NO13G03280.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds8	NO13G03280.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds9	NO13G03280.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds10	NO13G03280.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds11	NO13G03280.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds12	NO13G03280.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G03280.1.cds13	NO13G03280.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:961542..965465-
coding sequence from alignment at chr13:961542..965465-

mRNA sequence

>NO13G03280.1 ID=NO13G03280.1|Name=NO13G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGGGCGGCCGGCCTAGGATTTTGTTTCCCAGGGCAAGTCGACGTGTGGC
ACGCTCTGCTATTGATGCCTTCTGACACACCTCCGGACACGCGAGCCCCG
AAAGCAAGATTACCAGGGCAGCAGCATCTCAAGGCGTAAGGCACAGAGAC
GAAGAGGGAGGAGACAAAGTACACACGCAAGGTAGGATAGAAGCAGGAAA
ACGCAGCCTTCGACAGCCGAGCTCGAAAGGCGCGCCCACGGACAAAAAGG
GAGATAGTGAAGCCCACCAGTGCCCTGAGAGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTAGCAGCAGTAGTAGTGGCAGTATAAGCAGTGTATTGAC
GGGCAAGCACCGATCAGGAAAAAAGGAGAAGAAAGAGAAGGAGAAGAAAG
AGAAGAAGAAGGAGGAGAAGAAGAAGATGTCGTATTCGTCCTCGGCCCCG
ACCTCGTCCTCCATGGCCGCCCACTCTACCTCCAAGCGCCGGGATATGGA
CTTGATGAAGCTGATGATGAGCGACTTCCAGGTCCACATACCCGACGAAA
GCCGCCTCCATGAGTTTTGGGTCGTCCTCCACGGCCCCGCCGAGACCCCT
TACCACGGCGGCCAGTGGAAAGTGCACGTGGCGCTCCCTCCCGACTATCC
CTTCAAGTCTCCCTCTATCGGATTCACCAACCGGCTCTTCCACCCCAATG
TCGACGAAATGTCGGGCTCGGTGTGCCTTGATGTCATCAATCAGGCATGG
ACTCCCATGTACGACCTGGTGAACGTCTTCGAGGCCTTTTTGCCGCAGCT
CCTCCGCTATCCCAACCCCAGCGACCCCCTGAATCCCGACGCGGCCCACC
TCCTCCTCCGCGACCCTGAAAAGTATCACGACCGCGTTCAAGACTACGGG
GGGGGGAAGGCGGGGGGGAGGGAGGGAGGGAGGGCGAGGACAGCCTCTTC
TTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCATCCT
CAGCGGCAAGAGGAGCCAGGCCCTTGTCGGCTCAGCCGAGGCACCGACAT
CCCTCTCTGTCGTCGTCGGTGGCCACGACGGTGTCTGTCGCTCTCTCTTC
CTCTCTCACGCCCTCCACCGACTCCCACCTCTTTTCCTCCTCTGCCGCCT
CCTCTTCCTCCTCTTCCTCCCTCCGCACCTCCCCTGCGTCCTCCCCACGC
CCTCGTCCACGAGGCCACCCACGGTCAGTTTCCCTGGGCATGGTCCCCTC
GTCCTCCCTCAGCACACGACCCACCACCGTGCAGGTGGAGGCCTCTCACG
GCGATGTTGACGACGAGGACGTGAAGCGGGCCCCGTCTGTCTCCCTCCCG
TCGACCGAGGTAGCCGCCACGAGGGAGGAGGAGGAGGAGGGAGAAGGGGA
GGAGCAAGGAGGAGAGAGTGACATCGATTCGGATGTGAGCGAATTGAGTG
ACATTGATATTTAA

protein sequence of NO13G03280.1

>NO13G03280.1-protein ID=NO13G03280.1-protein|Name=NO13G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MGGRPRILFPRASRRVARSAIDAF*HTSGHASPESKITRAAASQGVRHRD
EEGGDKVHTQGRIEAGKRSLRQPSSKGAPTDKKGDSEAHQCPERSSSSSS
SSSSSSSSSGSISSVLTGKHRSGKKEKKEKEKKEKKKEEKKKMSYSSSAP
TSSSMAAHSTSKRRDMDLMKLMMSDFQVHIPDESRLHEFWVVLHGPAETP
YHGGQWKVHVALPPDYPFKSPSIGFTNRLFHPNVDEMSGSVCLDVINQAW
TPMYDLVNVFEAFLPQLLRYPNPSDPLNPDAAHLLLRDPEKYHDRVQDYG
GGKAGGREGGRARTASSSSSPSSSSSSSSSSSSSAARGARPLSAQPRHRH
PSLSSSVATTVSVALSSSLTPSTDSHLFSSSAASSSSSSSLRTSPASSPR
PRPRGHPRSVSLGMVPSSSLSTRPTTVQVEASHGDVDDEDVKRAPSVSLP
STEVAATREEEEEGEGEEQGGESDIDSDVSELSDIDI*

mRNA from alignment at chr13:961542..965465-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G03280.1 ID=NO13G03280.1|Name=NO13G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3924bp|location=Sequence derived from alignment at chr13:961542..965465- (Nannochloropsis oceanica)
ATGGGCGGCCGGCCTAGGATTTTGTTTCCCAGGGCAAGTCGACGTGTGGC
ACGCTCTGCTATTGATGCCTTCTGGTCCATTTCATCCAATCCCTCACGCA
GGCCCGTCGTCGCGGCCTTTACCACTGACCGGCTCCTCCTACTAGGAACC
ATGCTGTGCTATCTCTATCCTTGCATTCCTCCATTCAGCGCTTAAGGCGT
GGCGTGGCTCTGATTTGATGTTGCTTCAGGGGGAGTCATCGCTCGCTGAA
GAGAGAGGAGATCAAGGACAACAACCCCTTACCTTTCATCCCTCCCTAGA
TATTCAAATAAGATGGGCAAACATCCACGACGTGACAGTGTCGACTCGCT
CGGCCGGAGTCAAGTGGGAAATTCGGCACATTCATTCCTCCCCCTCCCTC
CCTCCCTCCCTATCCAGACACACCTCCGGACACGCGAGCCCCGAAAGCAA
GATTACCAGGGCAGCAGCATCTCAAGGCGTAAGGCACAGAGACGAAGAGG
GAGGAGACAAAGTACACACGCAAGGTAGGATAGAAGCAGGAAAACGCAGC
CTTCGACAGCCGAGCTCGAAAGGCGCGCCCACGGACAAAAAGGGAGATAG
TGAAGCCCACCAGTGCCCTGAGAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTAGCAGCAGTAGTAGTGGCAGTATAAGCAGTGTATTGACGGGCAAG
CACCGATCAGGAAGTAAAGTTCTTGCCTGCAGGGGCTGAGGGCTAAGGAA
GTTCAATTGAGAAGGAAAGACAAGAAGCAGGCATTGCTCTGGTTGCCCCC
GTCTACCACCCTTCCCTCCGCATCATCTTCCTCGTCAATTCCCCTGGGGA
AAGAAAGGGGTAGACTTATCCAGAAAGCACGCTTTCCGTTGGGTGAGTCA
ATCTTTAATTAGAGGCAGAAAAGGAGAAGAAAGAGAAGGAGAAGAAAGAG
AAGAAGAAGGAGGAGAAGAAGAAGATGTCGTATTCGTCCTCGGCCCCGAC
CTCGTCCTCCATGGCCGCCCACTCTACCTCCAAGCGCCGGGATATGGACT
TGATGAAGCTGTGCGTAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGGT
GGACATTCTTGTTCTCACTCTCGTCATGATATCGAATGCAAGAGATTCAC
CTTCCCCTTTCTCCGTCTCACGCCCATCCCTCCCTCCCTCTCTTAATAAT
CATCGTCCCGTCCCCCCCTCCCTCCCTCCCGCCTCCTCCCCTCAGGATGA
TGAGCGACTTCCAGGTCCACATACCCGACGAAAGCCGCCTCCATGAGTTT
TGGGTCGTCCTCCACGGCCCCGCCGAGAGTACGTTCCCTCTCTCCCTCCT
TTCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCATGATTTCCTCCGCCGAT
CCGTGTTCTGAGGCCATACGCCGTTGACTGTAGTCTTACTCAACCAACCT
CCCTCCCTCCCTCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCCTTCC
CTCTCTCCCCCAGCCCCTTACCACGGCGGCCAGTGGAAAGTGCACGTGGC
GCTCCCTCCCGACTATCCCTTCAAGTCTCCCTCTATCGGATTCACCAACC
GGCTCTTCCACCCCAATGTCGACGAAATGTAAGGAAGCCCTTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCGTATGTGTTGGTG
GTGATATGCTTCACAGGAGGGGAGGGATGGAGGGAGGGAGGGGCCGAGGG
GGTACCGCCACTCCTCCACCCCCGGCCTCTTCCCTCTCTTCTTTATGACA
GCAGCTCGCCGCTTTGTGCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTAGGTCGGGCTCGGTGTGCCTTGATGTCATC
AATCAGGCATGGACTCCCATGTACGGTAGGTGCCGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGAGGGAGGGAGGGAGGGAGGGCATGCGAGCTATATGGGTAGGATG
AGACACACTGGAGGAAGGAAATTAGAAAAATGCCAGGGGCTGATGCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGACCTGGTGA
ACGTCTTCGAGGCCTTTTTGCCGCAGCTCCTCCGCTATCCCAACCCCAGC
GACCCCCTGAATCCCGACGGTAGGGAGGGAGGGAGGGGGGGAGGGAGAGG
TGCAGGAAGGGAGGAGGGGAGGGAGGGAAAGGAAGGAAAAAGGGAGAGGT
GCAGGAAGGGAGGAGGGGAGGGAGGGAAAGGAAGGAAGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGAAGGGAAAAGTACACATGCTGGGTCTGTGT
TATAAGATGTATCCATCTCTCTTGTTTATTTACCTCACCTGCTTCCTCCC
TCCCTCCCTCCCGCTTCCCTCCCTCCCTCCCTCTCTCCCCCCTCCAGCGG
CCCACCTCCTCCTCCGCGACCCTGAAAAGTATCACGACCGCGTTCAAGGT
GAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAT
TCTGTCACAGCAAAAGAATGCTAAAATCCCTCAACAATTTATCTTTCCGC
CTCCCTCCCTCCCTCCCTCCCTTTAAGACTACGTGCGTCGCTTCGCCTCC
GTTCCTTTTCTCCTCGCCGACGAGGGCGGGGGCAGGGGGGGGGGAAGGCG
GGGGGGAGGGAGGGAGGGAGGGCGAGGACAGCCTCTTCTTCCTCCTCCCC
CTCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCATCCTCAGCGGCAAGAG
GAGCCAGGCCCTTGTCGGCTCAGCCGAGGCACCGACATCCCTCTCTGTCG
TCGTCGGTGGTAAGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAGGGAGG
GAAGACCCAATGGCATTGCTTTCATCGAATCTCTGCCTTGTCTGTGTTGC
TGTTGATTGATTTCATAATGCGTCCTTCGTTCCTTCCTTCCTTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGCCACGACGGT
GTCTGTCGCTCTCTCTTCCTCTCTCACGCCCTCCACCGACTCCCACCTCT
TTTCCTCCTCTGCCGCCTCCTCTTCCTCCTCTTCCTCCCTCCGCACCTCC
CCTGCGTCCTCCCCACGCCCTCGTCCACGAGGCCACCCACGGTACGTCCT
CCTAACTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCTCTT
CCATTTAAAACATTTTCAAATTTTCGGTCTCGCTGAGATATGCCCGTGTC
TTGTCCCACTGCCCTCCCTCCCTCCCTCCCTCACTCACTCACTCCGTTTC
CTCCTCCCTCCTTCCTTCCCTTCCTTTTAAACCTCAGCTCATCATCACGC
CTTCCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCAGGTCAGTTTCCC
TGGGCATGGTCCCCTCGTCCTCCCTCAGCACACGACCCACCACCGTGCAG
GTGGAGGCCTCTCACGGTAAGGGAGGAGGGAGGGAGGGGATGCATGCTTG
ATGTCGATGGATGAGAGGGAAGGAGGGCCGTGGGGCAACTTTTCTTCTTG
TCGGCCGTTTTCACTCCCTCCACTCGCCTTCCCTCCCTCCCTCCCTCCCT
CCCGCCCTAGGCGATGTTGACGACGAGGACGTGAAGCGGGCCCCGTCTGT
CTCCCTCCCGTCGACCGAGGTAGCCGCCACGAGGGAGGAGGAGGAGGAGG
GAGAAGGGGAGGAGCAAGGAGGAGAGAGTGACATCGATTCGGATGTGAGC
GAATTGAGTGACATTGATATTTAA

Coding sequence (CDS) from alignment at chr13:961542..965465-

>NO13G03280.1 ID=NO13G03280.1|Name=NO13G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr13:961542..965465- (Nannochloropsis oceanica)
ATGGGCGGCCGGCCTAGGATTTTGTTTCCCAGGGCAAGTCGACGTGTGGC
ACGCTCTGCTATTGATGCCTTCTGACACACCTCCGGACACGCGAGCCCCG
AAAGCAAGATTACCAGGGCAGCAGCATCTCAAGGCGTAAGGCACAGAGAC
GAAGAGGGAGGAGACAAAGTACACACGCAAGGTAGGATAGAAGCAGGAAA
ACGCAGCCTTCGACAGCCGAGCTCGAAAGGCGCGCCCACGGACAAAAAGG
GAGATAGTGAAGCCCACCAGTGCCCTGAGAGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTAGCAGCAGTAGTAGTGGCAGTATAAGCAGTGTATTGAC
GGGCAAGCACCGATCAGGAAAAAAGGAGAAGAAAGAGAAGGAGAAGAAAG
AGAAGAAGAAGGAGGAGAAGAAGAAGATGTCGTATTCGTCCTCGGCCCCG
ACCTCGTCCTCCATGGCCGCCCACTCTACCTCCAAGCGCCGGGATATGGA
CTTGATGAAGCTGATGATGAGCGACTTCCAGGTCCACATACCCGACGAAA
GCCGCCTCCATGAGTTTTGGGTCGTCCTCCACGGCCCCGCCGAGACCCCT
TACCACGGCGGCCAGTGGAAAGTGCACGTGGCGCTCCCTCCCGACTATCC
CTTCAAGTCTCCCTCTATCGGATTCACCAACCGGCTCTTCCACCCCAATG
TCGACGAAATGTCGGGCTCGGTGTGCCTTGATGTCATCAATCAGGCATGG
ACTCCCATGTACGACCTGGTGAACGTCTTCGAGGCCTTTTTGCCGCAGCT
CCTCCGCTATCCCAACCCCAGCGACCCCCTGAATCCCGACGCGGCCCACC
TCCTCCTCCGCGACCCTGAAAAGTATCACGACCGCGTTCAAGACTACGGG
GGGGGGAAGGCGGGGGGGAGGGAGGGAGGGAGGGCGAGGACAGCCTCTTC
TTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCATCCT
CAGCGGCAAGAGGAGCCAGGCCCTTGTCGGCTCAGCCGAGGCACCGACAT
CCCTCTCTGTCGTCGTCGGTGGCCACGACGGTGTCTGTCGCTCTCTCTTC
CTCTCTCACGCCCTCCACCGACTCCCACCTCTTTTCCTCCTCTGCCGCCT
CCTCTTCCTCCTCTTCCTCCCTCCGCACCTCCCCTGCGTCCTCCCCACGC
CCTCGTCCACGAGGCCACCCACGGTCAGTTTCCCTGGGCATGGTCCCCTC
GTCCTCCCTCAGCACACGACCCACCACCGTGCAGGTGGAGGCCTCTCACG
GCGATGTTGACGACGAGGACGTGAAGCGGGCCCCGTCTGTCTCCCTCCCG
TCGACCGAGGTAGCCGCCACGAGGGAGGAGGAGGAGGAGGGAGAAGGGGA
GGAGCAAGGAGGAGAGAGTGACATCGATTCGGATGTGAGCGAATTGAGTG
ACATTGATATTTAA

Synonyms

Publications