NO13G03220.1, NO13G03220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03220.1
Unique NameNO13G03220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2401
Alignment locationchr13:938848..941902 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:938848..941902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03220.1 vs.
Match: EWM20744.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 231.1 bits (588), Expect = 9.600e-57
Identity = 154/377 (40.85%), Postives = 223/377 (59.15%), Query Frame = 0 
Query:   73 SSSSSAPLSSSSSPSSSPSSPSPLLDLVIERIDFKPMVHLYMQAFHGLREEGLVDRRRAIGLLRMWMNLGLLFGGNSDPTLGMFSQVQDSLGISGVELEDPVYLAHEAPLSVRRQRLRDMQVDSMVGERAKALRLTPAFQHADDGRRAVYLATVDGADSSVATNHAYDTFYRRPGELMQDMRRRRCDISFLLASVVAPEDRLSFFRSLLYSTLTTCPAKMTGLVKCFDRQGNMTLFLVEARAIQLSPTAWAAMSIHEPAPSSRHITSRPDTTRTVNTHHPA-FQPASPLREGSMQWRGREEGGGKGGEERGGEGREEKRGPCTLSGPSLSSSSSSSSTLLTSTSLPCASSSSFFVPPPPLPPSLPFPGVASLPFPLP 449
            +  S  P+  +SS SS     SP LDLVIER D   MV LY+QAF  L +EG+++R+RAIGLL+ W++LG++  G+ DPT G F++V+ +  I+ +ELEDP  LA+E PL   + RL   + D ++GE AK L      + A++  RAVY+A +D  D  V +N A++T++R P E MQDM +RRC ++FL A+ VAPEDRL++F+ L ++TL+T   K T  +K FDRQG MTL+L + + +++ P  +A++ + EPAP SRH+T+RPD TR  +THHP     AS  R  S   R R+         R G    E R P   +G         +  +L  +    AS +S F   P   P +  P +AS+P   P
Sbjct:  150 TQGSRRPVRGTSS-SSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAG----EIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSP 521
The following BLAST results are available for this feature:
BLAST of NO13G03220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20744.19.600e-5740.85Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03220NO13G03220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03220.1NO13G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03220.1.cds1NO13G03220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03220.1.cds2NO13G03220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03220.1.cds3NO13G03220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03220.1.cds4NO13G03220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03220.1.cds5NO13G03220.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03220.1 ID=NO13G03220.1|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
CTCTTGATTCATTCATCTATCCACCAACTTATTATTATTATCCAGTCCCT
GATAAATTATTCACTAAGGCCTTCCTCCCAACGTAATACGAGGGGGTATG
TTTGGCGGTTCGGTATGCTCAGTCATGATCCTCCAATACTATGAACACGC
AGGACTGGTCGAGGCCAGCATCAATAATATCCATGCATTGAGTGCCTCAC
AAACCTTTTCCCTCCCAATCTACGCCCCTCTCCAGGTGCTACCGCCTAAA
CAAGCCCTGCCGCCCCCCACAGAATCACTCGAGCTCCTTTACAACCCTGC
CTCCTCCTCATCGTCCTCCTCCTCTTCCGCCCCCTTATCCTCCTCCTCCT
CCCCCTCCTCCTCTCCTTCCTCCCCCTCCCCCCTCCTGGACCTGGTCATC
GAACGTATCGACTTCAAACCCATGGTACATCTGTATATGCAGGCCTTCCA
CGGGCTGAGGGAGGAGGGACTCGTGGATAGAAGACGGGCGATTGGCTTGT
TAAGGATGTGGATGAACCTGGGCTTGCTCTTTGGAGGCAACTCGGATCCG
ACGTTGGGCATGTTCTCACAGGTCCAGGACTCCCTAGGCATTAGTGGCGT
AGAGCTCGAGGATCCCGTGTATCTGGCTCATGAGGCCCCCTTGTCCGTGA
GGAGGCAGAGGCTACGGGACATGCAGGTCGACAGCATGGTCGGCGAGCGA
GCAAAGGCCCTCCGGCTGACCCCGGCGTTCCAGCACGCCGATGACGGCCG
ACGGGCTGTGTATTTGGCCACCGTGGATGGGGCAGACTCTAGCGTGGCGA
CCAATCATGCCTATGACACCTTCTACCGACGCCCAGGGGAATTGATGCAG
GATATGAGGAGGCGGCGGTGCGATATCTCCTTCTTGCTTGCCTCGGTCGT
TGCGCCTGAAGACCGACTGTCTTTCTTCCGAAGCTTGCTCTACAGCACCC
TCACGACCTGCCCTGCCAAAATGACGGGCCTTGTCAAGTGCTTCGATCGA
CAGGGAAACATGACGCTCTTCCTGGTCGAAGCCAGGGCCATCCAACTCTC
CCCCACGGCATGGGCCGCTATGAGCATCCACGAGCCTGCGCCTAGCTCCC
GCCACATCACCTCCCGCCCCGACACCACCCGCACTGTGAACACCCACCAT
CCTGCCTTTCAGCCGGCCTCTCCCCTGAGGGAAGGAAGCATGCAATGGAG
GGGGAGGGAGGAGGGAGGGGGAAAGGGAGGGGAGGAGAGGGGAGGAGAGG
GGAGGGAGGAGAAGAGAGGGCCATGCACGTTGTCGGGTCCGTCCTTGTCC
TCGTCCTCGTCCTCGTCTTCAACACTTCTCACCTCTACTTCCCTGCCTTG
TGCCTCCTCCTCCTCCTTCTTCGTTCCTCCTCCGCCCCTCCCTCCCTCCC
TCCCTTTTCCCGGCGTGGCATCTCTCCCTTTCCCTCTTCCACCTCGCTCA
GCCTGCCTTCCTCGCTCAGGCACACCAATAAGCTGGCCTCCTTCTGGCCC
CTCGTCCCCCCTCCACCCCTCCCCTGTTCTTCCTCCTCCTCCTCTTGCTC
CTCCTCCTCCTTCTGCTCCTCAGTCCTCCCTCCATCCTTCCACTGTTTCT
CCTCCTTCTGCTCCTCTAGCATCTCCTTCTGCTCCGCTTGCTCCTTCTCC
TCTTGCGCCTCCTCTTCTTGCTCCTCCTCCTCCTCCTCCTCCTCCTGCTT
CTCCTTTTCTTGCTCCTGCTCCTCGTCCTCCTGCTTCTCCTTCTCTCTCC
TTCTCCTTTGTATTTCCCTCCATGTATTCTGACTCCTCCTCGTTCCCTTC
TCCTAGTCCTCCTCAGCTGTCTCTGTCCTCCCTCCCTCCCTCTCTCCCTC
TGTCCTTTAATCTACCCAGCTCATTCCTAGAGGAAAGCGAAAGGGAGAGA
CTGAATCCAGAGATAAAGGGAGAGCGAGGAGGAGGAGGAGGAGGAGGGGG
CGGGATTGAGGGAGGGGAGGAGAGGAAGGAAGAGGACTGCCATGATCTGG
GATAGCAGCAACAATGCCAATAAAAGCAGCAAGAGTAGGAGCCGGAGCAA
GAGCAGGAGCAGAGCAGCAGCAGCAGTAATTTTGGGACGTGGAGGAGAAA
GAGGTGAAGAAGGAAGAGGCGATTCGTCGACCCTTGATATCTGTGAAAGA
TTTCCTGCTAGGATAGAGAGAAAAGGGGGGGGAAGAGACAGGGAGAGGGG
GAGGGAGTGATATGGAGGAAGGGAGGGATGCGGAAGGAGGGAGGGATATG
GAGGAACGTAGCAAAAAGGAATTTAATAAGATACATGAAGGTGGATGGAG
GGACTTTAAAACAAGGTGAAAGAAGATCTGTTGGGAAGAGAGGCAGTCGC
CCTATAATTTGAAAGGAAGGGCGGCAAAGATCCAATAGTGTAGAAGCCCT
C
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protein sequence of NO13G03220.1

>NO13G03220.1-protein ID=NO13G03220.1-protein|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MFGGSVCSVMILQYYEHAGLVEASINNIHALSASQTFSLPIYAPLQVLPP
KQALPPPTESLELLYNPASSSSSSSSSAPLSSSSSPSSSPSSPSPLLDLV
IERIDFKPMVHLYMQAFHGLREEGLVDRRRAIGLLRMWMNLGLLFGGNSD
PTLGMFSQVQDSLGISGVELEDPVYLAHEAPLSVRRQRLRDMQVDSMVGE
RAKALRLTPAFQHADDGRRAVYLATVDGADSSVATNHAYDTFYRRPGELM
QDMRRRRCDISFLLASVVAPEDRLSFFRSLLYSTLTTCPAKMTGLVKCFD
RQGNMTLFLVEARAIQLSPTAWAAMSIHEPAPSSRHITSRPDTTRTVNTH
HPAFQPASPLREGSMQWRGREEGGGKGGEERGGEGREEKRGPCTLSGPSL
SSSSSSSSTLLTSTSLPCASSSSFFVPPPPLPPSLPFPGVASLPFPLPPR
SACLPRSGTPISWPPSGPSSPLHPSPVLPPPPLAPPPPSAPQSSLHPSTV
SPPSAPLASPSAPLAPSPLAPPLLAPPPPPPPPASPFLAPAPRPPASPSL
SFSFVFPSMYSDSSSFPSPSPPQLSLSSLPPSLPLSFNLPSSFLEESERE
RLNPEIKGERGGGGGGGGGIEGGEERKEEDCHDLG*
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mRNA from alignment at chr13:938848..941902+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03220.1 ID=NO13G03220.1|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3055bp|location=Sequence derived from alignment at chr13:938848..941902+ (Nannochloropsis oceanica)
CTCTTGATTCATTCATCTATCCACCAACTTATTATTATTATCCAGTCCCT
GATAAATTATTCACTAAGGCCTTCCTCCCAACGTAATACGAGGGGGTATG
TTTGGCGGTTCGGTATGCTCAGTCATGATCCTCCAATACTATGAACACGC
AGGACTGGTCGAGGCCAGCATCAATAATATCCATGCATTGAGTGCCTCAC
AAACCTTTTCCCTCCCAATCTACGCCCCTCTCCAGGTGCTACCGCCTAAA
CAAGCCCTGCCGCCCCCCACAGAATCACTCGAGCTCCTTTACAACCCTGC
CTCCTCCTCATCGTCCTCCTCCTCTTCCGCCCCCTTATCCTCCTCCTCCT
CCCCCTCCTCCTCTCCTTCCTCCCCCTCCCCCCTCCTGGACCTGGTCATC
GAACGTATCGACTTCAAACCCATGGTACATCTGTATATGCAGGCCTTCCA
CGGGCTGAGGGAGGAGGGACTCGTGGATAGAAGACGGGCGATTGGCTTGT
TAAGGATGTGGATGAACCTGGGCTTGCTCTTTGGAGGCAACTCGGATCCG
ACGTTGGGCATGTTCTCACAGGTGAGTGAGTTATTTCTATATATATACAT
GCCTGCCTTCCTATTCCCTCCTTCTTCCCCTCCTTCCGCAGGGCCGACAC
ATAGACTCTCACTCTGTCCTTCCCTCTCTACCTCCCTCCTTAGGTCCAGG
ACTCCCTAGGCATTAGTGGCGTAGAGCTCGAGGATCCCGTGTATCTGGCT
CATGAGGCCCCCTTGTCCGTGAGGAGGCAGAGGCTACGGGACATGCAGGT
CGACAGCATGGTCGGCGAGCGAGCAAAGGGTGAGAGGGCGGGAAGGAGGG
CGGGAGGGGGGAGGAAGGGCGGGAGGGAGGGCAGGAGGGAGGGCAGGAGG
GAGGGCGGGAGGGAGGGTGGGAGGGATGGCGGGAGGGAGGGAGAAATAAG
GAAGGATATATTTACCTCCGAGTCACCAACAGCGAACACCGCGCTAGTGC
CATGCCTGCCACTTACAACCCCCATCCCTCCCTCTCTTCATCCCTCCTTC
TTTCCTTCCCTCCCTCCCTCCTTCCTCCAGCCCTCCGGCTGACCCCGGCG
TTCCAGCACGCCGATGACGGCCGACGGGCTGTGTATTTGGCCACCGTGGA
TGGGGCAGACTCTAGCGTGGCGACCAATCATGCCTATGACACCTTCTACC
GACGCCCAGGGGAATTGATGCAGGATATGAGGAGGCGGCGGTGCGATATC
TCCTTCTTGCTTGCCTCGTGAGTAGGGGCGGAAGATGGGAAGGAGAGGAA
GGACAAAGGGGAGAGGGAGGGAAGGAGGGAGAGAGGGAGGACATGCGGAT
GCATGACGTCCTACTCATTGGTTTCACTCAGTTATCTCCTTCTCCCTCCC
TCCCTCTTGTACTCCCTCCCTCCTTCCCAGGGTCGTTGCGCCTGAAGACC
GACTGTCTTTCTTCCGAAGCTTGCTCTACAGCACCCTCACGACCTGCCCT
GCCAAAATGACGGGCCTTGTCAAGGTAAGCTATTCTTCCCTCTCTCCCTC
CCTCTCTGTCCCCCTCTCTCCCTTTTACCTTCTCTCTCTTGCTCATCTGA
TCTCCCCCCCCCTCTTTGTGTCCCCGCTCCCCTTTCCCTCAGTGCTTCGA
TCGACAGGGAAACATGACGCTCTTCCTGGTCGAAGCCAGGGCCATCCAAC
TCTCCCCCACGGCATGGGCCGCTATGAGCATCCACGAGCCTGCGCCTAGC
TCCCGCCACATCACCTCCCGCCCCGACACCACCCGCACTGTGAACACCCA
CCATCCTGCCTTTCAGCCGGCCTCTCCCCTGAGGGAAGGAAGCATGCAAT
GGAGGGGGAGGGAGGAGGGAGGGGGAAAGGGAGGGGAGGAGAGGGGAGGA
GAGGGGAGGGAGGAGAAGAGAGGGCCATGCACGTTGTCGGGTCCGTCCTT
GTCCTCGTCCTCGTCCTCGTCTTCAACACTTCTCACCTCTACTTCCCTGC
CTTGTGCCTCCTCCTCCTCCTTCTTCGTTCCTCCTCCGCCCCTCCCTCCC
TCCCTCCCTTTTCCCGGCGTGGCATCTCTCCCTTTCCCTCTTCCACCTCG
CTCAGCCTGCCTTCCTCGCTCAGGCACACCAATAAGCTGGCCTCCTTCTG
GCCCCTCGTCCCCCCTCCACCCCTCCCCTGTTCTTCCTCCTCCTCCTCTT
GCTCCTCCTCCTCCTTCTGCTCCTCAGTCCTCCCTCCATCCTTCCACTGT
TTCTCCTCCTTCTGCTCCTCTAGCATCTCCTTCTGCTCCGCTTGCTCCTT
CTCCTCTTGCGCCTCCTCTTCTTGCTCCTCCTCCTCCTCCTCCTCCTCCT
GCTTCTCCTTTTCTTGCTCCTGCTCCTCGTCCTCCTGCTTCTCCTTCTCT
CTCCTTCTCCTTTGTATTTCCCTCCATGTATTCTGACTCCTCCTCGTTCC
CTTCTCCTAGTCCTCCTCAGCTGTCTCTGTCCTCCCTCCCTCCCTCTCTC
CCTCTGTCCTTTAATCTACCCAGCTCATTCCTAGAGGAAAGCGAAAGGGA
GAGACTGAATCCAGAGATAAAGGGAGAGCGAGGAGGAGGAGGAGGAGGAG
GGGGCGGGATTGAGGGAGGGGAGGAGAGGAAGGAAGAGGACTGCCATGAT
CTGGGATAGCAGCAACAATGCCAATAAAAGCAGCAAGAGTAGGAGCCGGA
GCAAGAGCAGGAGCAGAGCAGCAGCAGCAGTAATTTTGGGACGTGGAGGA
GAAAGAGGTGAAGAAGGAAGAGGCGATTCGTCGACCCTTGATATCTGTGA
AAGATTTCCTGCTAGGATAGAGAGAAAAGGGGGGGGAAGAGACAGGGAGA
GGGGGAGGGAGTGATATGGAGGAAGGGAGGGATGCGGAAGGAGGGAGGGA
TATGGAGGAACGTAGCAAAAAGGAATTTAATAAGATACATGAAGGTGGAT
GGAGGGACTTTAAAACAAGGTGAAAGAAGATCTGTTGGGAAGAGAGGCAG
TCGCCCTATAATTTGAAAGGAAGGGCGGCAAAGATCCAATAGTGTAGAAG
CCCTC
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Coding sequence (CDS) from alignment at chr13:938848..941902+

>NO13G03220.1 ID=NO13G03220.1|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr13:938848..941902+ (Nannochloropsis oceanica)
ATGTTTGGCGGTTCGGTATGCTCAGTCATGATCCTCCAATACTATGAACA
CGCAGGACTGGTCGAGGCCAGCATCAATAATATCCATGCATTGAGTGCCT
CACAAACCTTTTCCCTCCCAATCTACGCCCCTCTCCAGGTGCTACCGCCT
AAACAAGCCCTGCCGCCCCCCACAGAATCACTCGAGCTCCTTTACAACCC
TGCCTCCTCCTCATCGTCCTCCTCCTCTTCCGCCCCCTTATCCTCCTCCT
CCTCCCCCTCCTCCTCTCCTTCCTCCCCCTCCCCCCTCCTGGACCTGGTC
ATCGAACGTATCGACTTCAAACCCATGGTACATCTGTATATGCAGGCCTT
CCACGGGCTGAGGGAGGAGGGACTCGTGGATAGAAGACGGGCGATTGGCT
TGTTAAGGATGTGGATGAACCTGGGCTTGCTCTTTGGAGGCAACTCGGAT
CCGACGTTGGGCATGTTCTCACAGGTCCAGGACTCCCTAGGCATTAGTGG
CGTAGAGCTCGAGGATCCCGTGTATCTGGCTCATGAGGCCCCCTTGTCCG
TGAGGAGGCAGAGGCTACGGGACATGCAGGTCGACAGCATGGTCGGCGAG
CGAGCAAAGGCCCTCCGGCTGACCCCGGCGTTCCAGCACGCCGATGACGG
CCGACGGGCTGTGTATTTGGCCACCGTGGATGGGGCAGACTCTAGCGTGG
CGACCAATCATGCCTATGACACCTTCTACCGACGCCCAGGGGAATTGATG
CAGGATATGAGGAGGCGGCGGTGCGATATCTCCTTCTTGCTTGCCTCGGT
CGTTGCGCCTGAAGACCGACTGTCTTTCTTCCGAAGCTTGCTCTACAGCA
CCCTCACGACCTGCCCTGCCAAAATGACGGGCCTTGTCAAGTGCTTCGAT
CGACAGGGAAACATGACGCTCTTCCTGGTCGAAGCCAGGGCCATCCAACT
CTCCCCCACGGCATGGGCCGCTATGAGCATCCACGAGCCTGCGCCTAGCT
CCCGCCACATCACCTCCCGCCCCGACACCACCCGCACTGTGAACACCCAC
CATCCTGCCTTTCAGCCGGCCTCTCCCCTGAGGGAAGGAAGCATGCAATG
GAGGGGGAGGGAGGAGGGAGGGGGAAAGGGAGGGGAGGAGAGGGGAGGAG
AGGGGAGGGAGGAGAAGAGAGGGCCATGCACGTTGTCGGGTCCGTCCTTG
TCCTCGTCCTCGTCCTCGTCTTCAACACTTCTCACCTCTACTTCCCTGCC
TTGTGCCTCCTCCTCCTCCTTCTTCGTTCCTCCTCCGCCCCTCCCTCCCT
CCCTCCCTTTTCCCGGCGTGGCATCTCTCCCTTTCCCTCTTCCACCTCGC
TCAGCCTGCCTTCCTCGCTCAGGCACACCAATAAGCTGGCCTCCTTCTGG
CCCCTCGTCCCCCCTCCACCCCTCCCCTGTTCTTCCTCCTCCTCCTCTTG
CTCCTCCTCCTCCTTCTGCTCCTCAGTCCTCCCTCCATCCTTCCACTGTT
TCTCCTCCTTCTGCTCCTCTAGCATCTCCTTCTGCTCCGCTTGCTCCTTC
TCCTCTTGCGCCTCCTCTTCTTGCTCCTCCTCCTCCTCCTCCTCCTCCTG
CTTCTCCTTTTCTTGCTCCTGCTCCTCGTCCTCCTGCTTCTCCTTCTCTC
TCCTTCTCCTTTGTATTTCCCTCCATGTATTCTGACTCCTCCTCGTTCCC
TTCTCCTAGTCCTCCTCAGCTGTCTCTGTCCTCCCTCCCTCCCTCTCTCC
CTCTGTCCTTTAATCTACCCAGCTCATTCCTAGAGGAAAGCGAAAGGGAG
AGACTGAATCCAGAGATAAAGGGAGAGCGAGGAGGAGGAGGAGGAGGAGG
GGGCGGGATTGAGGGAGGGGAGGAGAGGAAGGAAGAGGACTGCCATGATC
TGGGATAG
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Synonyms
Publications