Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr13 genome chr13:938848..941902 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03220.1 vs.
Match: EWM20744.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])
HSP 1 Score: 231.1 bits (588), Expect = 9.600e-57
Identity = 154/377 (40.85%), Postives = 223/377 (59.15%), Query Frame = 0
Query: 73 SSSSSAPLSSSSSPSSSPSSPSPLLDLVIERIDFKPMVHLYMQAFHGLREEGLVDRRRAIGLLRMWMNLGLLFGGNSDPTLGMFSQVQDSLGISGVELEDPVYLAHEAPLSVRRQRLRDMQVDSMVGERAKALRLTPAFQHADDGRRAVYLATVDGADSSVATNHAYDTFYRRPGELMQDMRRRRCDISFLLASVVAPEDRLSFFRSLLYSTLTTCPAKMTGLVKCFDRQGNMTLFLVEARAIQLSPTAWAAMSIHEPAPSSRHITSRPDTTRTVNTHHPA-FQPASPLREGSMQWRGREEGGGKGGEERGGEGREEKRGPCTLSGPSLSSSSSSSSTLLTSTSLPCASSSSFFVPPPPLPPSLPFPGVASLPFPLP 449
+ S P+ +SS SS SP LDLVIER D MV LY+QAF L +EG+++R+RAIGLL+ W++LG++ G+ DPT G F++V+ + I+ +ELEDP LA+E PL + RL + D ++GE AK L + A++ RAVY+A +D D V +N A++T++R P E MQDM +RRC ++FL A+ VAPEDRL++F+ L ++TL+T K T +K FDRQG MTL+L + + +++ P +A++ + EPAP SRH+T+RPD TR +THHP AS R S R R+ R G E R P +G + +L + AS +S F P P + P +AS+P P
Sbjct: 150 TQGSRRPVRGTSS-SSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFRVASGDMRRRQACDVSKQWSRAG----EIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPVVSP 521
The following BLAST results are available for this feature:
BLAST of NO13G03220.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 9.60e-57 / Id = 40.85 Sequence EWM20744.1
Match Name E-value Identity Description
EWM20744.1 9.600e-57 40.85 Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO13G03220.1 ID=NO13G03220.1|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp back to top protein sequence of NO13G03220.1
>NO13G03220.1-protein ID=NO13G03220.1-protein|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp back to top mRNA from alignment at chr13:938848..941902+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03220.1 ID=NO13G03220.1|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3055bp|location=Sequence derived from alignment at chr13:938848..941902+ (Nannochloropsis oceanica)ATG
TTTGGCGGTTCGGTATGCTCAGTCATGATCCTCCAATACTATGAACACGC
AGGACTGGTCGAGGCCAGCATCAATAATATCCATGCATTGAGTGCCTCAC
AAACCTTTTCCCTCCCAATCTACGCCCCTCTCCAGGTGCTACCGCCTAAA
CAAGCCCTGCCGCCCCCCACAGAATCACTCGAGCTCCTTTACAACCCTGC
CTCCTCCTCATCGTCCTCCTCCTCTTCCGCCCCCTTATCCTCCTCCTCCT
CCCCCTCCTCCTCTCCTTCCTCCCCCTCCCCCCTCCTGGACCTGGTCATC
GAACGTATCGACTTCAAACCCATGGTACATCTGTATATGCAGGCCTTCCA
CGGGCTGAGGGAGGAGGGACTCGTGGATAGAAGACGGGCGATTGGCTTGT
TAAGGATGTGGATGAACCTGGGCTTGCTCTTTGGAGGCAACTCGGATCCG
ACGTTGGGCATGTTCTCACAG GTGAGTGAGTTATTTCTATATATATACAT
GCCTGCCTTCCTATTCCCTCCTTCTTCCCCTCCTTCCGCAGGGCCGACAC
ATAGACTCTCACTCTGTCCTTCCCTCTCTACCTCCCTCCTTAGGTCCAGG
ACTCCCTAGGCATTAGTGGCGTAGAGCTCGAGGATCCCGTGTATCTGGCT
CATGAGGCCCCCTTGTCCGTGAGGAGGCAGAGGCTACGGGACATGCAGGT
CGACAGCATGGTCGGCGAGCGAGCAAAGG GTGAGAGGGCGGGAAGGAGGG
CGGGAGGGGGGAGGAAGGGCGGGAGGGAGGGCAGGAGGGAGGGCAGGAGG
GAGGGCGGGAGGGAGGGTGGGAGGGATGGCGGGAGGGAGGGAGAAATAAG
GAAGGATATATTTACCTCCGAGTCACCAACAGCGAACACCGCGCTAGTGC
CATGCCTGCCACTTACAACCCCCATCCCTCCCTCTCTTCATCCCTCCTTC
TTTCCTTCCCTCCCTCCCTCCTTCCTCCAGCCCTCCGGCTGACCCCGGCG
TTCCAGCACGCCGATGACGGCCGACGGGCTGTGTATTTGGCCACCGTGGA
TGGGGCAGACTCTAGCGTGGCGACCAATCATGCCTATGACACCTTCTACC
GACGCCCAGGGGAATTGATGCAGGATATGAGGAGGCGGCGGTGCGATATC
TCCTTCTTGCTTGCCTC GTGAGTAGGGGCGGAAGATGGGAAGGAGAGGAA
GGACAAAGGGGAGAGGGAGGGAAGGAGGGAGAGAGGGAGGACATGCGGAT
GCATGACGTCCTACTCATTGGTTTCACTCAGTTATCTCCTTCTCCCTCCC
TCCCTCTTGTACTCCCTCCCTCCTTCCCAGGGTCGTTGCGCCTGAAGACC
GACTGTCTTTCTTCCGAAGCTTGCTCTACAGCACCCTCACGACCTGCCCT
GCCAAAATGACGGGCCTTGTCAAG GTAAGCTATTCTTCCCTCTCTCCCTC
CCTCTCTGTCCCCCTCTCTCCCTTTTACCTTCTCTCTCTTGCTCATCTGA
TCTCCCCCCCCCTCTTTGTGTCCCCGCTCCCCTTTCCCTCAGTGCTTCGA
TCGACAGGGAAACATGACGCTCTTCCTGGTCGAAGCCAGGGCCATCCAAC
TCTCCCCCACGGCATGGGCCGCTATGAGCATCCACGAGCCTGCGCCTAGC
TCCCGCCACATCACCTCCCGCCCCGACACCACCCGCACTGTGAACACCCA
CCATCCTGCCTTTCAGCCGGCCTCTCCCCTGAGGGAAGGAAGCATGCAAT
GGAGGGGGAGGGAGGAGGGAGGGGGAAAGGGAGGGGAGGAGAGGGGAGGA
GAGGGGAGGGAGGAGAAGAGAGGGCCATGCACGTTGTCGGGTCCGTCCTT
GTCCTCGTCCTCGTCCTCGTCTTCAACACTTCTCACCTCTACTTCCCTGC
CTTGTGCCTCCTCCTCCTCCTTCTTCGTTCCTCCTCCGCCCCTCCCTCCC
TCCCTCCCTTTTCCCGGCGTGGCATCTCTCCCTTTCCCTCTTCCACCTCG
CTCAGCCTGCCTTCCTCGCTCAGGCACACCAATAAGCTGGCCTCCTTCTG
GCCCCTCGTCCCCCCTCCACCCCTCCCCTGTTCTTCCTCCTCCTCCTCTT
GCTCCTCCTCCTCCTTCTGCTCCTCAGTCCTCCCTCCATCCTTCCACTGT
TTCTCCTCCTTCTGCTCCTCTAGCATCTCCTTCTGCTCCGCTTGCTCCTT
CTCCTCTTGCGCCTCCTCTTCTTGCTCCTCCTCCTCCTCCTCCTCCTCCT
GCTTCTCCTTTTCTTGCTCCTGCTCCTCGTCCTCCTGCTTCTCCTTCTCT
CTCCTTCTCCTTTGTATTTCCCTCCATGTATTCTGACTCCTCCTCGTTCC
CTTCTCCTAGTCCTCCTCAGCTGTCTCTGTCCTCCCTCCCTCCCTCTCTC
CCTCTGTCCTTTAATCTACCCAGCTCATTCCTAGAGGAAAGCGAAAGGGA
GAGACTGAATCCAGAGATAAAGGGAGAGCGAGGAGGAGGAGGAGGAGGAG
GGGGCGGGATTGAGGGAGGGGAGGAGAGGAAGGAAGAGGACTGCCATGAT
CTGGGATAG back to top Coding sequence (CDS) from alignment at chr13:938848..941902+
>NO13G03220.1 ID=NO13G03220.1|Name=NO13G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr13:938848..941902+ (Nannochloropsis oceanica) back to top