NO13G02870.1, NO13G02870.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G02870.1
Unique Name	NO13G02870.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2104
Alignment location	chr13:798138..800786 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:798138..800786 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G02870.1 vs.
Match: EWM21952.1 (trna rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 365.2 bits (936), Expect = 3.900e-97
Identity = 180/223 (80.72%), Postives = 201/223 (90.13%), Query Frame = 0

Query:  307 KIRAGSSHRCAATRNDDVAPERKAALDAALVTLGIDVQALTEEDQVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLG 530
            +IR GSSHRCAATR D V P RKAALDAAL +L ID+QAL++EDQVTGSGSSALRSYFSFVQPRP+KQH PVDNA++ AA RAANQIAFLVRAYRAEQAE+LRNHDEAMS LQ     MHPL+LILDN+RSAYNVGSLFRTAETAL+ E+ITCGFTPHPPH+KLKKTACRS+ENVPSRHF TTL+AV+ +KEEGF+V+AMETTSRS+CY HV FPEK ALVLG
Sbjct:  176 RIRTGSSHRCAATREDAVVPARKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLG 398

The following BLAST results are available for this feature:

BLAST of NO13G02870.1 vs.

BLAST of NO13G02870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21952.1	3.900e-97	80.72	trna rrna methyltransferase [Nannochloropsis gadit...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G02870	NO13G02870	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02870.1	NO13G02870.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02870.1.cds1	NO13G02870.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02870.1.cds2	NO13G02870.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02870.1.cds3	NO13G02870.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02870.1.cds4	NO13G02870.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:798138..800786-
coding sequence from alignment at chr13:798138..800786-

mRNA sequence

>NO13G02870.1 ID=NO13G02870.1|Name=NO13G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp
ATGCGTCATAAGCCTCGCTTCCTGCCTCTCCTGCCCTCCCTGGTGCTTTT
CACAGCCGCAGCCTCCTCGACCATTGCTACCCTGCCGCTGTTACGCTTTA
CCTTTCTCTCTGCCGTCTCCTCCTCCTTCTCCCTCCCCTCGTTGTCATCT
TTGATCAAGCGCTCGTGTAGCGCCTCCACGTTCGTTTGCCCCTTGTCGCA
CCAGCATCAGCAGCTCCGTCAGCACTCAAGCAACTGTCATTCAAAGCCCC
GACGCTTCTTTTCAACTTCATCCTCCTCCTCTGCGGGCACACTTCCCAAA
AAGAACGCCTGGGGCCAACGTATTGTCCCGCTGGACAACCTCCCTCATCC
TGTCCCTCCCTCTCTCCCGTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCT
CCTCTGTGGTGGTGGACTTGACGGACCCCTTGCTGCGACGAGGCTTGCCT
GAAATCGGTGACATCAAGGAAGGAATCGCTTTTTTTCACTTGCAACAAGA
ACCGCAGGAAGGACAGTCGGAGCAGCAGCAGGGGGCAACAAACAGCAGTG
ACGGCAGTGTATTACCCTCCCTATCACTCGCAATTTTTCTCCAGCAAGCA
GAGGACGACACCACCACACCCAACTATCACCTGCAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCGCCTCATTGGGATCCCCATCCGCGACGGCTGTCTCGTTGA
CCCACAGAGCCGGCCTGGCACTCCCCGCATCCATCTCCTCCTCCCTCCTA
CCATGGATCCCTCCCTCCCACTCGCCGGTCTTCCTTCCTCCACCATCACT
GTGACGTGGAATGGAGACAAGATTCGCGCAGGATCATCTCATCGATGTGC
TGCCACACGGAATGATGATGTTGCCCCCGAGAGAAAAGCTGCTCTTGATG
CTGCTCTTGTTACGCTTGGCATCGATGTGCAAGCTCTCACCGAGGAAGAC
CAGGTCACCGGCAGTGGCTCATCCGCTCTCCGCTCCTACTTCTCCTTCGT
CCAACCCCGTCCGAACAAGCAACATGGACCTGTGGACAATGCCATTGATC
TAGCCGCCAACCGCGCCGCCAATCAGATTGCTTTTCTCGTGCGAGCGTAC
AGGGCAGAACAGGCTGAATATTTACGCAACCACGACGAAGCCATGTCCCT
GCTGCAGCAGCGCTCTCTTCCCATGCACCCCCTCCTCCTCATCCTCGACA
ACATCCGTAGCGCGTACAACGTAGGCTCACTCTTCCGCACGGCTGAGACC
GCTTTGGTTTCCGAAGTCATCACGTGTGGTTTTACACCGCATCCGCCTCA
CGACAAGCTGAAAAAGACTGCGTGTAGATCGATTGAGAATGTACCCAGTC
GTCATTTCGACACCACTTTGGAGGCGGTGAAAAAAGTGAAGGAGGAGGGC
TTCCTCGTGTACGCCATGGAGACGACGAGCCGGAGCGAGTGCTATGCCCA
TGTTCAATTTCCCGAAAAAGTGGCGTTAGTGCTGGGTAGGTTGTTTTCAC
TCTATTCCTTCATCCATACATTTATTTTCTCCTTCATCTCACTCGCTCAT
TACTGTGCACCTTCTTTTTCTTCTTTCTGTTTGTCGGAAAAGGGGCTTGG
GAAAGGAGGATCAGAAGGTGGTAGAATCCACTGGAATTGAATGAATCATT
GCAGGAGAGAGAAATGAATCTTTCTCTTTCCCTCCCTCCCTCCCTCCGTC
CCTTCCTCCCTCCCTCCCCCCTCTCAGGCAATGAAGTGATCGGCGTTGAC
ACCATGGTGTTGGAGGAGTGCGATGGCGGGATAATTGAAATCCCAACCTT
TGGACAGAAAAATAGTTTGAATGTCGCGAGTGCAGCGCCGGTCGTGGTAT
TTGAGGTGTTACGGCAGTGGGGTGCCTTCGAGTACAAGATGGAAGGAAAT
AAATAAAGCCAAAATGAGAGAAACAACATGTATAAAATTCGAGTCAGAAT
GGAAGAATAGGAGACGAAGAGAAAAAATAGAAAATCATAAATGTGCGTGT
GAAA

protein sequence of NO13G02870.1

>NO13G02870.1-protein ID=NO13G02870.1-protein|Name=NO13G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MRHKPRFLPLLPSLVLFTAAASSTIATLPLLRFTFLSAVSSSFSLPSLSS
LIKRSCSASTFVCPLSHQHQQLRQHSSNCHSKPRRFFSTSSSSSAGTLPK
KNAWGQRIVPLDNLPHPVPPSLPSSSSSSSSSSSSVVVDLTDPLLRRGLP
EIGDIKEGIAFFHLQQEPQEGQSEQQQGATNSSDGSVLPSLSLAIFLQQA
EDDTTTPNYHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQ
QQQRLIGIPIRDGCLVDPQSRPGTPRIHLLLPPTMDPSLPLAGLPSSTIT
VTWNGDKIRAGSSHRCAATRNDDVAPERKAALDAALVTLGIDVQALTEED
QVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAY
RAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAET
ALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEG
FLVYAMETTSRSECYAHVQFPEKVALVLGRLFSLYSFIHTFIFSFISLAH
YCAPSFSSFCLSEKGLGKGGSEGGRIHWN*

mRNA from alignment at chr13:798138..800786-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G02870.1 ID=NO13G02870.1|Name=NO13G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr13:798138..800786- (Nannochloropsis oceanica)
ATGCGTCATAAGCCTCGCTTCCTGCCTCTCCTGCCCTCCCTGGTGCTTTT
CACAGCCGCAGCCTCCTCGACCATTGCTACCCTGCCGCTGTTACGCTTTA
CCTTTCTCTCTGCCGTCTCCTCCTCCTTCTCCCTCCCCTCGTTGTCATCT
TTGATCAAGCGCTCGTGTAGCGCCTCCACGTTCGTTTGCCCCTTGTCGCA
CCAGCATCAGCAGCTCCGTCAGCACGTACGTACTCCCTCGCTTGCCAATC
CCATCCCTTCACCTTGGTGTCCGATGCGTTGGTGCAGACAGGCGCAAGCT
ACTAGCCGGCCATAAACACTCATTTGATCTCTATCTTTTTTGTTCTACCT
CAGTCAAGCAACTGTCATTCAAAGCCCCGACGCTTCTTTTCAACTTCATC
CTCCTCCTCTGCGGGCACACTTCCCAAAAAGAACGCCTGGGGCCAACGTA
TTGTCCCGCTGGACAACCTCCCTCATCCTGTCCCTCCCTCTCTCCCGTCC
TCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCTGTGGTGGTGGACTTGAC
GGACCCCTTGCTGCGACGAGGCTTGCCTGAAATCGGTGACATCAAGGAAG
GAATCGCTTTTTTTCACTTGCAACAAGAACCGCAGGAAGGACAGTCGGAG
CAGCAGCAGGGGGCAACAAACAGCAGTGACGGCAGTGTATTACCCTCCCT
ATCACTCGCAATTTTTCTCCAGCAAGCAGAGGACGACACCACCACACCCA
ACTATCACCTGCAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCTCATTGGGA
TCCCCATCCGCGACGGCTGTCTCGTTGACCCACAGAGCCGGCCTGGCACT
CCCCGCATCCATCTCCTCCTCCCTCCTACCATGGATCCCTCCCTCCCACT
CGCCGGTCTTCCTTCCTCCACCATCACTGTGACGTGGAATGGAGACAAGA
TTCGCGCAGGATCATCTCATCGATGTGCTGCCACACGGAATGATGATGTT
GCCCCCGAGAGAAAAGCTGCTCTTGATGCTGCTCTTGTTACGCTTGGTAG
GTGCCCTCTCTCCTTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTTGC
CTCCTGTGTGATCGTCGTCGTACTGCTACAAGGAACCATAGTGTTACTCA
TGAGCAATAGAACGCCCTAGACACCGCTCTTACGATCACAGGTGGGATAC
ACCTTTCCTTCCCCCCCTCCTTCCCTCTCTTCTTCCCTTTCTTTAGCAAT
CGCGGCGCAACACTTCGCAACCTGCTGACTTTCGCTACATTGTACCCACG
CTTCCCCCATCCCCCCCTCCCTCTGTCGCCTCCCTCCTGTCAGGCATCGA
TGTGCAAGCTCTCACCGAGGAAGACCAGGTCACCGGCAGTGGCTCATCCG
CTCTCCGCTCCTACTTCTCCTTCGTCCAACCCCGTCCGAACAAGCAACAT
GGACCTGTGGACAATGCCATTGATCTAGCCGCCAACCGCGCCGCCAATCA
GATTGCTTTTCTCGTGCGAGCGTACAGGGCAGAACAGGCTGAATATTTAC
GGTAAGTCAGCCAACCCGTCCTCCCTCCCTCCCTCCCTCCCTCGATCCTT
CCTCCTTACTTACCTTCATTCCCTTCCTCGGCCCCGCCCCCCCTCCTCCC
CCCTCCGTCCTTTCTCACTAGCAACCACGACGAAGCCATGTCCCTGCTGC
AGCAGCGCTCTCTTCCCATGCACCCCCTCCTCCTCATCCTCGACAACATC
CGTAGCGCGTACAACGTAGGCTCACTCTTCCGCACGGCTGAGACCGCTTT
GGTTTCCGAAGTCATCACGTGTGGTTTTACACCGCATCCGCCTCACGACA
AGCTGAAAAAGACTGCGTGTAGATCGATTGAGAATGTACCCAGTCGTCAT
TTCGACACCACTTTGGAGGCGGTGAAAAAAGTGAAGGAGGAGGGCTTCCT
CGTGTACGCCATGGAGACGACGAGCCGGAGCGAGTGCTATGCCCATGTTC
AATTTCCCGAAAAAGTGGCGTTAGTGCTGGGTAGGTTGTTTTCACTCTAT
TCCTTCATCCATACATTTATTTTCTCCTTCATCTCACTCGCTCATTACTG
TGCACCTTCTTTTTCTTCTTTCTGTTTGTCGGAAAAGGGGCTTGGGAAAG
GAGGATCAGAAGGTGGTAGAATCCACTGGAATTGAATGAATCATTGCAGG
AGAGAGAAATGAATCTTTCTCTTTCCCTCCCTCCCTCCCTCCGTCCCTTC
CTCCCTCCCTCCCCCCTCTCAGGCAATGAAGTGATCGGCGTTGACACCAT
GGTGTTGGAGGAGTGCGATGGCGGGATAATTGAAATCCCAACCTTTGGAC
AGAAAAATAGTTTGAATGTCGCGAGTGCAGCGCCGGTCGTGGTATTTGAG
GTGTTACGGCAGTGGGGTGCCTTCGAGTACAAGATGGAAGGAAATAAATA
AAGCCAAAATGAGAGAAACAACATGTATAAAATTCGAGTCAGAATGGAAG
AATAGGAGACGAAGAGAAAAAATAGAAAATCATAAATGTGCGTGTGAAA

Coding sequence (CDS) from alignment at chr13:798138..800786-

>NO13G02870.1 ID=NO13G02870.1|Name=NO13G02870.1|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at chr13:798138..800786- (Nannochloropsis oceanica)
ATGCGTCATAAGCCTCGCTTCCTGCCTCTCCTGCCCTCCCTGGTGCTTTT
CACAGCCGCAGCCTCCTCGACCATTGCTACCCTGCCGCTGTTACGCTTTA
CCTTTCTCTCTGCCGTCTCCTCCTCCTTCTCCCTCCCCTCGTTGTCATCT
TTGATCAAGCGCTCGTGTAGCGCCTCCACGTTCGTTTGCCCCTTGTCGCA
CCAGCATCAGCAGCTCCGTCAGCACTCAAGCAACTGTCATTCAAAGCCCC
GACGCTTCTTTTCAACTTCATCCTCCTCCTCTGCGGGCACACTTCCCAAA
AAGAACGCCTGGGGCCAACGTATTGTCCCGCTGGACAACCTCCCTCATCC
TGTCCCTCCCTCTCTCCCGTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCT
CCTCTGTGGTGGTGGACTTGACGGACCCCTTGCTGCGACGAGGCTTGCCT
GAAATCGGTGACATCAAGGAAGGAATCGCTTTTTTTCACTTGCAACAAGA
ACCGCAGGAAGGACAGTCGGAGCAGCAGCAGGGGGCAACAAACAGCAGTG
ACGGCAGTGTATTACCCTCCCTATCACTCGCAATTTTTCTCCAGCAAGCA
GAGGACGACACCACCACACCCAACTATCACCTGCAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCGCCTCATTGGGATCCCCATCCGCGACGGCTGTCTCGTTGA
CCCACAGAGCCGGCCTGGCACTCCCCGCATCCATCTCCTCCTCCCTCCTA
CCATGGATCCCTCCCTCCCACTCGCCGGTCTTCCTTCCTCCACCATCACT
GTGACGTGGAATGGAGACAAGATTCGCGCAGGATCATCTCATCGATGTGC
TGCCACACGGAATGATGATGTTGCCCCCGAGAGAAAAGCTGCTCTTGATG
CTGCTCTTGTTACGCTTGGCATCGATGTGCAAGCTCTCACCGAGGAAGAC
CAGGTCACCGGCAGTGGCTCATCCGCTCTCCGCTCCTACTTCTCCTTCGT
CCAACCCCGTCCGAACAAGCAACATGGACCTGTGGACAATGCCATTGATC
TAGCCGCCAACCGCGCCGCCAATCAGATTGCTTTTCTCGTGCGAGCGTAC
AGGGCAGAACAGGCTGAATATTTACGCAACCACGACGAAGCCATGTCCCT
GCTGCAGCAGCGCTCTCTTCCCATGCACCCCCTCCTCCTCATCCTCGACA
ACATCCGTAGCGCGTACAACGTAGGCTCACTCTTCCGCACGGCTGAGACC
GCTTTGGTTTCCGAAGTCATCACGTGTGGTTTTACACCGCATCCGCCTCA
CGACAAGCTGAAAAAGACTGCGTGTAGATCGATTGAGAATGTACCCAGTC
GTCATTTCGACACCACTTTGGAGGCGGTGAAAAAAGTGAAGGAGGAGGGC
TTCCTCGTGTACGCCATGGAGACGACGAGCCGGAGCGAGTGCTATGCCCA
TGTTCAATTTCCCGAAAAAGTGGCGTTAGTGCTGGGTAGGTTGTTTTCAC
TCTATTCCTTCATCCATACATTTATTTTCTCCTTCATCTCACTCGCTCAT
TACTGTGCACCTTCTTTTTCTTCTTTCTGTTTGTCGGAAAAGGGGCTTGG
GAAAGGAGGATCAGAAGGTGGTAGAATCCACTGGAATTGA

Synonyms

Publications