NO13G02760.3, NO13G02760.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02760.3
Unique NameNO13G02760.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1547
Alignment locationchr13:757533..759515 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:757533..759515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02760.3 vs.
Match: EWM21937.1 (enoyl- hydratase domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 348.2 bits (892), Expect = 2.600e-92
Identity = 184/256 (71.88%), Postives = 206/256 (80.47%), Query Frame = 0 
Query:   25 LRHSSSTAASSCIASTLYDPTRKGPPTN-EMLAFMDRLRSSGGPGGSIKVARSDHDDRVLELTINHPKSRNALTGQMMMNLHDITLELTTAKANSKFKDCCALILRGEGSSFCAGADFHLASSIATPEQGVLMAELMTDTLTRLRRAPLITVAAIGGPAMGGGAEVATSTDFRVMSTNGKIQFIQSRMGVSCGWGGTSRLVKLVGRQKALHLLGAAPSLDAATALEIRLVDKICDEHTDVQLAAWEFLSPFLTHTT 280
            LRH SS AA S I + L  PT  G   N ++ AF ++LRS+G   G I++ RSDHDDRVLEL I +PKSRN+LTG+MMM L DI+ EL     N+KFKDCCALIL  EG+SFCAGADFHLASSIATPE+GVLMAELMTDTLTRLRRAPLI+VAAIGGPAMGGGAE+ATSTDFRVMS   K+QF+QSRMGVSCGWGGTSRLVKLVGRQK LH+LG A  LDA TA  + LVD +CDE  DVQ AAWEFL PFL HTT
Sbjct:   35 LRHLSSNAAFSKIVAAL-TPTACGKEENVDITAFQEKLRSAGDSSGYIELKRSDHDDRVLELIIKNPKSRNSLTGKMMMTLSDISRELNVPMENNKFKDCCALILSSEGTSFCAGADFHLASSIATPEEGVLMAELMTDTLTRLRRAPLISVAAIGGPAMGGGAELATSTDFRVMSPRAKMQFVQSRMGVSCGWGGTSRLVKLVGRQKTLHVLGTALPLDARTAKGMGLVDVVCDEEVDVQHAAWEFLVPFLRHTT 289
The following BLAST results are available for this feature:
BLAST of NO13G02760.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21937.12.600e-9271.88enoyl- hydratase domain-containing protein 1 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02760NO13G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02760.3NO13G02760.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02760.3.cds1NO13G02760.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02760.3.cds2NO13G02760.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02760.3.cds3NO13G02760.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02760.3.cds4NO13G02760.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02760.3.cds5NO13G02760.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02760.3 ID=NO13G02760.3|Name=NO13G02760.3|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp
ACATCAACAGTTATAGCAGATAGAGAGGCAAACTGCAATGGCAGCGGCGA
TGGCTGGGTGGCGACGTGGCGTCGTCATGTTTTGGCAGCGCACTTATCCC
CCTGCGACCCTTCGCCACTCTTCTTCTACTGCTGCCTCATCTTGCATCGC
CTCGACGCTTTACGACCCCACGCGCAAGGGCCCGCCCACCAATGAGATGT
TGGCATTTATGGACAGGCTTCGATCATCGGGCGGGCCTGGGGGATCGATT
AAAGTCGCTCGCAGTGACCATGATGACCGTGTCTTGGAATTAACCATTAA
CCATCCGAAAAGCAGAAATGCGCTTACGGGCCAAATGATGATGAACCTGC
ACGACATCACTTTGGAGCTGACAACCGCAAAAGCTAACAGCAAATTTAAG
GATTGCTGCGCCCTCATCCTCCGTGGTGAAGGGTCATCGTTTTGTGCGGG
GGCCGATTTTCACCTTGCCTCTTCCATTGCCACGCCGGAGCAAGGCGTGC
TCATGGCCGAGCTTATGACGGACACCCTCACACGACTCCGCCGAGCTCCT
CTCATAACCGTTGCGGCCATAGGGGGTCCTGCCATGGGAGGGGGGGCCGA
GGTGGCGACGAGCACCGACTTTCGCGTCATGTCCACCAATGGCAAGATCC
AGTTTATACAGAGCCGGATGGGTGTTAGTTGTGGGTGGGGAGGAACGTCA
CGTTTGGTCAAGCTGGTGGGCCGCCAGAAGGCCCTCCATCTCCTCGGTGC
CGCCCCGTCCCTCGACGCTGCCACTGCTCTCGAGATACGATTAGTCGACA
AGATCTGCGACGAGCACACGGACGTGCAACTCGCCGCTTGGGAGTTTTTG
TCGCCTTTCTTGACGCATACCACTGGTAAGGACATTTTCTCTGTGTTTGT
ACTACCCCCTCCTTCATTCCTGCCACGTTTTGTCGCTCTCTCCGAATTGA
CAGTGAAGGTGTAGACCGCGACTCCCCCTCCCCCTCCCTTTTCCCATCTC
CCTTCCTTTCTTTCCTGCTTCAATCTCGATTGTTTAAGAACAAACATTTG
GAGCAATGAGGAGGGGACAGATAACTAACGACGGACAAAATACACTTGGA
ACCCTCGAATGTTCGGCGTTCAATCATTTCATTAATACCTCACCACCAAA
TGGACCTTACAGAGGCTTTGCGTGCCATAAAGGTAGGCGTGGCCGCCGAA
GATCTAGGCTGGGAGCAGGCCCGAGAAGTAGAAACGTTTGCTTTCCGCAC
CACATGGGGCAGCCCGGCCAATAAACATGCCCTCGCAACAGCAAAAAAAA
AGATTCGAGGCGGCGGGGAAGAAGAAGTGAATCGATGAAAAGCATGTCTA
GCAACCGTAGCCGCTAAGTATTCGCACGAAGGAGAAAATAGAGGGTCGAT
GGGACAGGGGTGTTATTTTGTTGCTTGTTATTAAGGAGTAAGGAGAGGAG
GGAAGGATTGTTGTATGAAGGAAATTGAGAGTCGAGGCTAAGGGATGGGG
CTTGCTGCAGACGCATCAAGAAAAAATAATAGATCCGACTTTTGCGA
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protein sequence of NO13G02760.3

>NO13G02760.3-protein ID=NO13G02760.3-protein|Name=NO13G02760.3|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MAAAMAGWRRGVVMFWQRTYPPATLRHSSSTAASSCIASTLYDPTRKGPP
TNEMLAFMDRLRSSGGPGGSIKVARSDHDDRVLELTINHPKSRNALTGQM
MMNLHDITLELTTAKANSKFKDCCALILRGEGSSFCAGADFHLASSIATP
EQGVLMAELMTDTLTRLRRAPLITVAAIGGPAMGGGAEVATSTDFRVMST
NGKIQFIQSRMGVSCGWGGTSRLVKLVGRQKALHLLGAAPSLDAATALEI
RLVDKICDEHTDVQLAAWEFLSPFLTHTTGKDIFSVFVLPPPSFLPRFVA
LSELTVKV*
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mRNA from alignment at chr13:757533..759515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02760.3 ID=NO13G02760.3|Name=NO13G02760.3|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at chr13:757533..759515+ (Nannochloropsis oceanica)
ACATCAACAGTTATAGCAGATAGAGAGGCAAACTGCAATGGCAGCGGCGA
TGGCTGGGTGGCGACGTGGCGTCGTCATGTTTTGGCAGCGCACTTATCCC
CCTGCGACCCTTCGCCACTCTTCTTCTACTGCTGCCTCATCTTGCATCGC
CTCGACGCTTTACGACCCCACGCGCAAGGGCCCGCCCACCAATGAGATGT
TGGCATTTATGGACAGGCTTCGATCATCGGGCGGGCCTGGGGGATCGGTG
AGCATAAGTGTTGGAGGAGCCCCAGCGTCTCATCGCTCACCCTTGCTTTG
ACCTTACTGCTTTTTTTGCTTTTTCCCTTCCTTTTCACAGATTAAAGTCG
CTCGCAGTGACCATGATGACCGTGTCTTGGAATTAACCATTAACCATCCG
AAAAGCAGGTGAGGTGTGGGAGGGCACATGCGGGGCAGTGAACACATCTC
ATCCTCATCTTTCATTTCCCTTGCATCCCCTTCTCCTCCTGTCAGAAATG
CGCTTACGGGCCAAATGATGATGAACCTGCACGACATCACTTTGGAGCTG
ACAACCGCAAAAGCTAACAGCAAATTTAAGGATTGCTGCGCCCTCATCCT
CCGTGGTGAAGGGTCATCGTTTTGTGCGGGGGCCGATTTTCACCTTGCCT
CTTCCATTGCCACGCCGGAGCAAGGCGTGCTCATGGCCGAGCTTATGACG
GACACCCTCACACGACTCCGGTACGTACGTACGCAACAGACTGTCAATAA
CAAGTCAAGAATATGGTTGTACTTACTCCTGCTGCTTCCTGTTGGTCTAT
AAATACAGCCGAGCTCCTCTCATAACCGTTGCGGCCATAGGGGGTCCTGC
CATGGGAGGGGGGGCCGAGGTGGCGACGAGCACCGACTTTCGCGTCATGT
CCACCAATGGCAAGATCCAGTTTATACAGAGCCGGATGGGTGTTAGTTGT
GGGTGGGGAGGAACGTCACGTTTGGTCAAGGTGAGGGAGGGAAGGTGTCC
ATCTTATGGGGAAAGGGTAGCGAGACGAGAGGATTAATGAGTGAGTTGTA
ATTTACTCACAGCCTTCTTACTCTCCACTTTATCCTATTTCTATACCATA
TCCATCAACTGTCTCCTCCTGTCTCCGCTACTTTGACGAAAATCGCAGCT
GGTGGGCCGCCAGAAGGCCCTCCATCTCCTCGGTGCCGCCCCGTCCCTCG
ACGCTGCCACTGCTCTCGAGATACGATTAGTCGACAAGATCTGCGACGAG
CACACGGACGTGCAACTCGCCGCTTGGGAGTTTTTGTCGCCTTTCTTGAC
GCATACCACTGGTAAGGACATTTTCTCTGTGTTTGTACTACCCCCTCCTT
CATTCCTGCCACGTTTTGTCGCTCTCTCCGAATTGACAGTGAAGGTGTAG
ACCGCGACTCCCCCTCCCCCTCCCTTTTCCCATCTCCCTTCCTTTCTTTC
CTGCTTCAATCTCGATTGTTTAAGAACAAACATTTGGAGCAATGAGGAGG
GGACAGATAACTAACGACGGACAAAATACACTTGGAACCCTCGAATGTTC
GGCGTTCAATCATTTCATTAATACCTCACCACCAAATGGACCTTACAGAG
GCTTTGCGTGCCATAAAGGTAGGCGTGGCCGCCGAAGATCTAGGCTGGGA
GCAGGCCCGAGAAGTAGAAACGTTTGCTTTCCGCACCACATGGGGCAGCC
CGGCCAATAAACATGCCCTCGCAACAGCAAAAAAAAAGATTCGAGGCGGC
GGGGAAGAAGAAGTGAATCGATGAAAAGCATGTCTAGCAACCGTAGCCGC
TAAGTATTCGCACGAAGGAGAAAATAGAGGGTCGATGGGACAGGGGTGTT
ATTTTGTTGCTTGTTATTAAGGAGTAAGGAGAGGAGGGAAGGATTGTTGT
ATGAAGGAAATTGAGAGTCGAGGCTAAGGGATGGGGCTTGCTGCAGACGC
ATCAAGAAAAAATAATAGATCCGACTTTTGCGA
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Coding sequence (CDS) from alignment at chr13:757533..759515+

>NO13G02760.3 ID=NO13G02760.3|Name=NO13G02760.3|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr13:757533..759515+ (Nannochloropsis oceanica)
ATGGCAGCGGCGATGGCTGGGTGGCGACGTGGCGTCGTCATGTTTTGGCA
GCGCACTTATCCCCCTGCGACCCTTCGCCACTCTTCTTCTACTGCTGCCT
CATCTTGCATCGCCTCGACGCTTTACGACCCCACGCGCAAGGGCCCGCCC
ACCAATGAGATGTTGGCATTTATGGACAGGCTTCGATCATCGGGCGGGCC
TGGGGGATCGATTAAAGTCGCTCGCAGTGACCATGATGACCGTGTCTTGG
AATTAACCATTAACCATCCGAAAAGCAGAAATGCGCTTACGGGCCAAATG
ATGATGAACCTGCACGACATCACTTTGGAGCTGACAACCGCAAAAGCTAA
CAGCAAATTTAAGGATTGCTGCGCCCTCATCCTCCGTGGTGAAGGGTCAT
CGTTTTGTGCGGGGGCCGATTTTCACCTTGCCTCTTCCATTGCCACGCCG
GAGCAAGGCGTGCTCATGGCCGAGCTTATGACGGACACCCTCACACGACT
CCGCCGAGCTCCTCTCATAACCGTTGCGGCCATAGGGGGTCCTGCCATGG
GAGGGGGGGCCGAGGTGGCGACGAGCACCGACTTTCGCGTCATGTCCACC
AATGGCAAGATCCAGTTTATACAGAGCCGGATGGGTGTTAGTTGTGGGTG
GGGAGGAACGTCACGTTTGGTCAAGCTGGTGGGCCGCCAGAAGGCCCTCC
ATCTCCTCGGTGCCGCCCCGTCCCTCGACGCTGCCACTGCTCTCGAGATA
CGATTAGTCGACAAGATCTGCGACGAGCACACGGACGTGCAACTCGCCGC
TTGGGAGTTTTTGTCGCCTTTCTTGACGCATACCACTGGTAAGGACATTT
TCTCTGTGTTTGTACTACCCCCTCCTTCATTCCTGCCACGTTTTGTCGCT
CTCTCCGAATTGACAGTGAAGGTGTAG
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Synonyms
Publications