NO13G02250.1, NO13G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02250.1
Unique NameNO13G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1536
Alignment locationchr13:628748..630283 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:628748..630283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02250.1 vs.
Match: XP_005713305.1 (fructose-1,6-bisphosphatase precursor [Chondrus crispus]; CDF33502.1 fructose-1,6-bisphosphatase precursor [Chondrus crispus])

HSP 1 Score: 330.1 bits (845), Expect = 1.200e-86
Identity = 166/367 (45.23%), Postives = 240/367 (65.40%), Query Frame = 0 
Query:  151 RMIMDEPK--VGEEPSVMSQALSKQKTLSRYVEVETWKHRELT---DLQPVMRGIESACRGIATLVRRAQCDEIAGLHGNDGDMNVQGEVQKVMDVLANNILAASMCAPGKMDYVASEEEEEPTYCSAVLQNAAFQGEYAGVFDPLDGSSNIEAGLPVGTIFGIYRRPQLNLSP-------ERERDPLEAIMQPGSKLLASGYCLYGGQTILVLTLGQGVHGFTLNKPGGDFILTQPNMRIPARGQLYAINEGSSHLWEPKVTEYVRRLKLGEGEGNVPHRTAYVGAMVADVHRVLVEGGVYAYPGTVDAPNGKIRLLYEANPMSMLVEQAGGLSTTGRQRILDLKPTGIHQRVPIFIGSKEDIKDL 506
            RM++  PK  V ++ S M        TL+RY+      + +L    D+Q +M  I+ AC+ I++LV+RA    + GL    G +NVQGE QK +DVL+N +L  ++   GKM  +ASEEE+EP     V+ +  + G Y  VFDPLDGSSNI+AG+  GTIFGI+ +    L+        E E   L   MQPGS L+A+GYC+Y    ++VLT G GV+GFTL+   G+F+LT P+M+IP RG +Y+ NE +   W+P + +YV+ LK G+G+ N  + + Y+G++VADVHR ++ GGV+ YPG    PNGK+RLLYE  PMS +VEQAGG++TTG+ RI+D+ P  +HQR+P+ IGSK+D+++L
Sbjct:   43 RMVVSPPKQTVHQDTSPM--------TLTRYMIQSAMDNTDLEHMQDMQSLMSSIQLACKKISSLVQRAGISNLTGLEDGGGSVNVQGEEQKKLDVLSNEVLKNALRYSGKMGIIASEEEDEP-----VVVDEVYSGNYVAVFDPLDGSSNIDAGIATGTIFGIFVQNTGCLASDWESKIDESELTCLYNTMQPGSNLVAAGYCMYSSSCMMVLTTGHGVNGFTLDPQIGEFVLTHPDMKIPERGNIYSFNEANEPAWDPILQKYVQNLKTGQGQTNQRYSSRYIGSLVADVHRTILYGGVFGYPGDAKNPNGKLRLLYECAPMSFIVEQAGGIATTGKDRIMDIIPNAVHQRMPLIIGSKDDVQEL 396
The following BLAST results are available for this feature:
BLAST of NO13G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005713305.11.200e-8645.23fructose-1,6-bisphosphatase precursor [Chondrus cr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02250NO13G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02250.1NO13G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02250.1.cds1NO13G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02250.1 ID=NO13G02250.1|Name=NO13G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
ATGGTAGGGCACAACGCCGGGGAACGAGCGGTGGCCGCGAGAACCCCACC
ACACCGCGTCTTTTTCCTTGTCTCACGCTCACACGTCTCCCATGTCTGTG
CCATCAACACCCAGGACAGGTTGGAGAAGCAGGAGATTGTGCGCGAGCCT
CCTGGGTCTCTCTGGCTCATGCAATACGCCGCCCATCCCCTCTTTGATCA
CCGCAACCATCTCCCGCGCCTCCGCATGACGACTACTACGATCATGCCAG
CAGCCGTAGCTGCTACACCAGCCAGAAAGCGAAGGAAACTACATCAGAAC
CCACTCGCAGCCTTGTCATCCCTCCATGCCCTCCTCTTGCTTGGTCTCGC
GTGGCTTGAGTGCCGAGCCTTCGTTATCCCTCGACCCACGTCCTCGCCTT
CGCTCGTCTTAAGCTTGACCCTACCACGGCAGCACCGGCCACGACAGCTT
CGGATGATTATGGACGAACCAAAAGTTGGTGAAGAGCCCTCGGTCATGTC
ACAAGCTTTGAGCAAGCAAAAGACCTTGTCGCGCTACGTGGAAGTCGAGA
CGTGGAAGCACCGGGAGCTAACAGACCTGCAACCCGTCATGCGCGGCATT
GAGTCCGCCTGTCGGGGCATCGCCACCTTAGTCCGCCGCGCGCAATGTGA
CGAAATTGCGGGTCTACATGGTAATGACGGAGATATGAATGTACAGGGGG
AGGTGCAAAAAGTTATGGATGTCCTCGCGAACAATATCCTGGCCGCTTCA
ATGTGTGCCCCCGGTAAAATGGACTACGTCGCCTCAGAGGAAGAAGAAGA
GCCCACTTACTGCTCTGCGGTCCTGCAAAATGCTGCATTCCAAGGGGAGT
ATGCCGGGGTTTTTGATCCATTAGATGGTAGCTCTAACATTGAGGCAGGT
CTGCCCGTGGGTACCATCTTTGGAATCTACCGACGCCCCCAACTCAACCT
CTCTCCGGAACGAGAACGAGATCCTCTCGAGGCCATCATGCAACCAGGCA
GCAAATTATTAGCCTCAGGATACTGCCTGTATGGAGGACAGACCATTCTC
GTCCTCACCCTCGGGCAGGGTGTGCACGGCTTCACGTTGAACAAGCCCGG
TGGGGACTTTATTTTAACCCAGCCCAACATGCGCATTCCAGCCCGAGGAC
AGCTTTATGCCATCAATGAGGGATCCTCCCACCTCTGGGAACCGAAGGTG
ACCGAGTACGTACGTCGACTGAAATTAGGCGAGGGGGAGGGGAATGTGCC
CCACAGAACGGCATACGTGGGAGCGATGGTCGCAGACGTGCATAGGGTGC
TGGTAGAGGGAGGGGTGTACGCTTACCCTGGTACGGTGGATGCGCCGAAT
GGAAAAATTCGGTTGTTGTACGAGGCAAATCCCATGAGCATGTTGGTGGA
GCAGGCGGGCGGATTGAGCACCACGGGTAGGCAAAGGATCTTGGACTTGA
AGCCGACGGGGATTCACCAGCGGGTGCCGATATTCATTGGTAGCAAGGAG
GATATCAAGGACCTGCAGGCATTGTTGAAGGATTGA
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protein sequence of NO13G02250.1

>NO13G02250.1-protein ID=NO13G02250.1-protein|Name=NO13G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MVGHNAGERAVAARTPPHRVFFLVSRSHVSHVCAINTQDRLEKQEIVREP
PGSLWLMQYAAHPLFDHRNHLPRLRMTTTTIMPAAVAATPARKRRKLHQN
PLAALSSLHALLLLGLAWLECRAFVIPRPTSSPSLVLSLTLPRQHRPRQL
RMIMDEPKVGEEPSVMSQALSKQKTLSRYVEVETWKHRELTDLQPVMRGI
ESACRGIATLVRRAQCDEIAGLHGNDGDMNVQGEVQKVMDVLANNILAAS
MCAPGKMDYVASEEEEEPTYCSAVLQNAAFQGEYAGVFDPLDGSSNIEAG
LPVGTIFGIYRRPQLNLSPERERDPLEAIMQPGSKLLASGYCLYGGQTIL
VLTLGQGVHGFTLNKPGGDFILTQPNMRIPARGQLYAINEGSSHLWEPKV
TEYVRRLKLGEGEGNVPHRTAYVGAMVADVHRVLVEGGVYAYPGTVDAPN
GKIRLLYEANPMSMLVEQAGGLSTTGRQRILDLKPTGIHQRVPIFIGSKE
DIKDLQALLKD*
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mRNA from alignment at chr13:628748..630283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02250.1 ID=NO13G02250.1|Name=NO13G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp|location=Sequence derived from alignment at chr13:628748..630283- (Nannochloropsis oceanica)
ATGGTAGGGCACAACGCCGGGGAACGAGCGGTGGCCGCGAGAACCCCACC
ACACCGCGTCTTTTTCCTTGTCTCACGCTCACACGTCTCCCATGTCTGTG
CCATCAACACCCAGGACAGGTTGGAGAAGCAGGAGATTGTGCGCGAGCCT
CCTGGGTCTCTCTGGCTCATGCAATACGCCGCCCATCCCCTCTTTGATCA
CCGCAACCATCTCCCGCGCCTCCGCATGACGACTACTACGATCATGCCAG
CAGCCGTAGCTGCTACACCAGCCAGAAAGCGAAGGAAACTACATCAGAAC
CCACTCGCAGCCTTGTCATCCCTCCATGCCCTCCTCTTGCTTGGTCTCGC
GTGGCTTGAGTGCCGAGCCTTCGTTATCCCTCGACCCACGTCCTCGCCTT
CGCTCGTCTTAAGCTTGACCCTACCACGGCAGCACCGGCCACGACAGCTT
CGGATGATTATGGACGAACCAAAAGTTGGTGAAGAGCCCTCGGTCATGTC
ACAAGCTTTGAGCAAGCAAAAGACCTTGTCGCGCTACGTGGAAGTCGAGA
CGTGGAAGCACCGGGAGCTAACAGACCTGCAACCCGTCATGCGCGGCATT
GAGTCCGCCTGTCGGGGCATCGCCACCTTAGTCCGCCGCGCGCAATGTGA
CGAAATTGCGGGTCTACATGGTAATGACGGAGATATGAATGTACAGGGGG
AGGTGCAAAAAGTTATGGATGTCCTCGCGAACAATATCCTGGCCGCTTCA
ATGTGTGCCCCCGGTAAAATGGACTACGTCGCCTCAGAGGAAGAAGAAGA
GCCCACTTACTGCTCTGCGGTCCTGCAAAATGCTGCATTCCAAGGGGAGT
ATGCCGGGGTTTTTGATCCATTAGATGGTAGCTCTAACATTGAGGCAGGT
CTGCCCGTGGGTACCATCTTTGGAATCTACCGACGCCCCCAACTCAACCT
CTCTCCGGAACGAGAACGAGATCCTCTCGAGGCCATCATGCAACCAGGCA
GCAAATTATTAGCCTCAGGATACTGCCTGTATGGAGGACAGACCATTCTC
GTCCTCACCCTCGGGCAGGGTGTGCACGGCTTCACGTTGAACAAGCCCGG
TGGGGACTTTATTTTAACCCAGCCCAACATGCGCATTCCAGCCCGAGGAC
AGCTTTATGCCATCAATGAGGGATCCTCCCACCTCTGGGAACCGAAGGTG
ACCGAGTACGTACGTCGACTGAAATTAGGCGAGGGGGAGGGGAATGTGCC
CCACAGAACGGCATACGTGGGAGCGATGGTCGCAGACGTGCATAGGGTGC
TGGTAGAGGGAGGGGTGTACGCTTACCCTGGTACGGTGGATGCGCCGAAT
GGAAAAATTCGGTTGTTGTACGAGGCAAATCCCATGAGCATGTTGGTGGA
GCAGGCGGGCGGATTGAGCACCACGGGTAGGCAAAGGATCTTGGACTTGA
AGCCGACGGGGATTCACCAGCGGGTGCCGATATTCATTGGTAGCAAGGAG
GATATCAAGGACCTGCAGGCATTGTTGAAGGATTGA
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Coding sequence (CDS) from alignment at chr13:628748..630283-

>NO13G02250.1 ID=NO13G02250.1|Name=NO13G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr13:628748..630283- (Nannochloropsis oceanica)
ATGGTAGGGCACAACGCCGGGGAACGAGCGGTGGCCGCGAGAACCCCACC
ACACCGCGTCTTTTTCCTTGTCTCACGCTCACACGTCTCCCATGTCTGTG
CCATCAACACCCAGGACAGGTTGGAGAAGCAGGAGATTGTGCGCGAGCCT
CCTGGGTCTCTCTGGCTCATGCAATACGCCGCCCATCCCCTCTTTGATCA
CCGCAACCATCTCCCGCGCCTCCGCATGACGACTACTACGATCATGCCAG
CAGCCGTAGCTGCTACACCAGCCAGAAAGCGAAGGAAACTACATCAGAAC
CCACTCGCAGCCTTGTCATCCCTCCATGCCCTCCTCTTGCTTGGTCTCGC
GTGGCTTGAGTGCCGAGCCTTCGTTATCCCTCGACCCACGTCCTCGCCTT
CGCTCGTCTTAAGCTTGACCCTACCACGGCAGCACCGGCCACGACAGCTT
CGGATGATTATGGACGAACCAAAAGTTGGTGAAGAGCCCTCGGTCATGTC
ACAAGCTTTGAGCAAGCAAAAGACCTTGTCGCGCTACGTGGAAGTCGAGA
CGTGGAAGCACCGGGAGCTAACAGACCTGCAACCCGTCATGCGCGGCATT
GAGTCCGCCTGTCGGGGCATCGCCACCTTAGTCCGCCGCGCGCAATGTGA
CGAAATTGCGGGTCTACATGGTAATGACGGAGATATGAATGTACAGGGGG
AGGTGCAAAAAGTTATGGATGTCCTCGCGAACAATATCCTGGCCGCTTCA
ATGTGTGCCCCCGGTAAAATGGACTACGTCGCCTCAGAGGAAGAAGAAGA
GCCCACTTACTGCTCTGCGGTCCTGCAAAATGCTGCATTCCAAGGGGAGT
ATGCCGGGGTTTTTGATCCATTAGATGGTAGCTCTAACATTGAGGCAGGT
CTGCCCGTGGGTACCATCTTTGGAATCTACCGACGCCCCCAACTCAACCT
CTCTCCGGAACGAGAACGAGATCCTCTCGAGGCCATCATGCAACCAGGCA
GCAAATTATTAGCCTCAGGATACTGCCTGTATGGAGGACAGACCATTCTC
GTCCTCACCCTCGGGCAGGGTGTGCACGGCTTCACGTTGAACAAGCCCGG
TGGGGACTTTATTTTAACCCAGCCCAACATGCGCATTCCAGCCCGAGGAC
AGCTTTATGCCATCAATGAGGGATCCTCCCACCTCTGGGAACCGAAGGTG
ACCGAGTACGTACGTCGACTGAAATTAGGCGAGGGGGAGGGGAATGTGCC
CCACAGAACGGCATACGTGGGAGCGATGGTCGCAGACGTGCATAGGGTGC
TGGTAGAGGGAGGGGTGTACGCTTACCCTGGTACGGTGGATGCGCCGAAT
GGAAAAATTCGGTTGTTGTACGAGGCAAATCCCATGAGCATGTTGGTGGA
GCAGGCGGGCGGATTGAGCACCACGGGTAGGCAAAGGATCTTGGACTTGA
AGCCGACGGGGATTCACCAGCGGGTGCCGATATTCATTGGTAGCAAGGAG
GATATCAAGGACCTGCAGGCATTGTTGAAGGATTGA
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Synonyms
Publications