NO13G02040.1, NO13G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02040.1
Unique NameNO13G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length459
Alignment locationchr13:582081..582539 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:582081..582539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G02040.1 vs.
Match: EWM21867.1 (hypothetical protein Naga_100169g7 [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 2.800e-39
Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 0 
Query:    1 MSTRPRSVRGIHADVFLSNATTAPSSSPTSLCASPPSPSTKLSA--PDGPQD--VAARVHRMEGTILNLEKQLKRLESVIATKSSGRNRAKMLVINYDVGPDAKVDSVDIAVGAAWVFGFLGLMIGRSIASNLWFVGFLTGAMWAGFLAREEEGG 152
            +  RP S  G+ AD+FL N TTA SSS ++L    P P    ++  P+  ++  + AR+ RMEGT+ +LE+++KRLES IA K  GR+RAKM+VINYDVGPDA++DSVDIAVGAA  FG LGL+IGRS+ASNLWFVGFLTGA+ AGFLAREEEGG
Sbjct:   83 LGLRPHSTGGVRADIFLRN-TTAVSSSVSTLERPQPEPPLHATSTIPENVEEKNMLARMRRMEGTMQSLEREVKRLESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGG 236
The following BLAST results are available for this feature:
BLAST of NO13G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21867.12.800e-3961.29hypothetical protein Naga_100169g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02040NO13G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02040.1NO13G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02040.1.cds1NO13G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02040.1 ID=NO13G02040.1|Name=NO13G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=459bp
ATGAGTACGAGACCACGCAGCGTCCGAGGCATCCACGCCGATGTCTTTTT
AAGCAACGCGACCACTGCGCCCTCGTCCTCTCCCACCTCTCTCTGTGCCT
CCCCCCCGTCGCCATCAACAAAATTGTCCGCACCCGACGGTCCCCAAGAC
GTCGCCGCCCGGGTCCATCGTATGGAAGGAACCATTCTAAATCTGGAAAA
GCAACTCAAGCGCTTAGAAAGCGTGATTGCTACCAAAAGCAGCGGCAGAA
ATCGAGCCAAAATGCTCGTTATAAACTATGACGTTGGCCCCGACGCGAAG
GTGGATTCTGTCGACATCGCCGTGGGCGCTGCATGGGTATTCGGTTTCCT
GGGATTAATGATCGGTCGCTCTATAGCGAGTAACTTGTGGTTCGTGGGAT
TTCTGACAGGGGCGATGTGGGCGGGGTTCCTGGCTAGGGAGGAAGAGGGG
GGGCGATAA
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protein sequence of NO13G02040.1

>NO13G02040.1-protein ID=NO13G02040.1-protein|Name=NO13G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSTRPRSVRGIHADVFLSNATTAPSSSPTSLCASPPSPSTKLSAPDGPQD
VAARVHRMEGTILNLEKQLKRLESVIATKSSGRNRAKMLVINYDVGPDAK
VDSVDIAVGAAWVFGFLGLMIGRSIASNLWFVGFLTGAMWAGFLAREEEG
GR*
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mRNA from alignment at chr13:582081..582539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02040.1 ID=NO13G02040.1|Name=NO13G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=459bp|location=Sequence derived from alignment at chr13:582081..582539+ (Nannochloropsis oceanica)
ATGAGTACGAGACCACGCAGCGTCCGAGGCATCCACGCCGATGTCTTTTT
AAGCAACGCGACCACTGCGCCCTCGTCCTCTCCCACCTCTCTCTGTGCCT
CCCCCCCGTCGCCATCAACAAAATTGTCCGCACCCGACGGTCCCCAAGAC
GTCGCCGCCCGGGTCCATCGTATGGAAGGAACCATTCTAAATCTGGAAAA
GCAACTCAAGCGCTTAGAAAGCGTGATTGCTACCAAAAGCAGCGGCAGAA
ATCGAGCCAAAATGCTCGTTATAAACTATGACGTTGGCCCCGACGCGAAG
GTGGATTCTGTCGACATCGCCGTGGGCGCTGCATGGGTATTCGGTTTCCT
GGGATTAATGATCGGTCGCTCTATAGCGAGTAACTTGTGGTTCGTGGGAT
TTCTGACAGGGGCGATGTGGGCGGGGTTCCTGGCTAGGGAGGAAGAGGGG
GGGCGATAA
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Coding sequence (CDS) from alignment at chr13:582081..582539+

>NO13G02040.1 ID=NO13G02040.1|Name=NO13G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at chr13:582081..582539+ (Nannochloropsis oceanica)
ATGAGTACGAGACCACGCAGCGTCCGAGGCATCCACGCCGATGTCTTTTT
AAGCAACGCGACCACTGCGCCCTCGTCCTCTCCCACCTCTCTCTGTGCCT
CCCCCCCGTCGCCATCAACAAAATTGTCCGCACCCGACGGTCCCCAAGAC
GTCGCCGCCCGGGTCCATCGTATGGAAGGAACCATTCTAAATCTGGAAAA
GCAACTCAAGCGCTTAGAAAGCGTGATTGCTACCAAAAGCAGCGGCAGAA
ATCGAGCCAAAATGCTCGTTATAAACTATGACGTTGGCCCCGACGCGAAG
GTGGATTCTGTCGACATCGCCGTGGGCGCTGCATGGGTATTCGGTTTCCT
GGGATTAATGATCGGTCGCTCTATAGCGAGTAACTTGTGGTTCGTGGGAT
TTCTGACAGGGGCGATGTGGGCGGGGTTCCTGGCTAGGGAGGAAGAGGGG
GGGCGATAA
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Synonyms
Publications