Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr13 genome chr13:544539..549139 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01860.2 vs.
Match: EWM21851.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])
HSP 1 Score: 224.6 bits (571), Expect = 3.200e-55
Identity = 124/188 (65.96%), Postives = 143/188 (76.06%), Query Frame = 0
Query: 18 LLLAIMLVQDGLSFVLRPFSMPAVQRASHTFQSAVQVSRVTNPADAIEISEFFVTSFWDAPITKAKQKDQLKSEVYRDLTTRYIGKGGAGGGASAASARVPAATGMGKSALLVAKEGGKVIGCVGLETRVIREGQVTKFEVVGKGDAPGTSIGPVVANLAVDRKLRRKGIGKKILAECEKIVKGWGFQ 206
LLL + FVL P A RA Q A++VSRVTNPA+A ISEFFV+SFWD PITK +Q++QLKSEVYRDLT RYI G G +S A +R+ AA GKSALLVAKEGGKV+GC GLETRVIREG VTK+EVV +GD PGT +GPV+ANLAVDR LRRKG+GKKIL ECE++VKGWGFQ
Sbjct: 22 LLLLASFIHTSQGFVLVPQRPAAAPRALRP-QYAIRVSRVTNPAEAEGISEFFVSSFWDTPITKPRQREQLKSEVYRDLTARYICGAGKSGASSPAGSRMGAAR--GKSALLVAKEGGKVVGCGGLETRVIREGLVTKYEVVKRGDPPGTCLGPVLANLAVDRTLRRKGVGKKILMECERVVKGWGFQ 206
The following BLAST results are available for this feature:
BLAST of NO13G01860.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 3.20e-55 / Id = 65.96 Sequence EWM21851.1
Match Name E-value Identity Description
EWM21851.1 3.200e-55 65.96 gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO13G01860.2 ID=NO13G01860.2|Name=NO13G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=4362bp back to top protein sequence of NO13G01860.2
>NO13G01860.2-protein ID=NO13G01860.2-protein|Name=NO13G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp back to top mRNA from alignment at chr13:544539..549139+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01860.2 ID=NO13G01860.2|Name=NO13G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=4601bp|location=Sequence derived from alignment at chr13:544539..549139+ (Nannochloropsis oceanica)ATGCGATTCA
GCAGTGTGCTCGGTTTGCCCTCCACGCTGCGCCTTTTGCTCCTCCTCCTC
GCCATCATGCTTGTTCAGGACGGACTCAGCTTTGTGCTGCGACCATTCTC
GATGCCCGCCGTCCAACGAG GTAAGAAGTAAGGGTGTATGAAATGCATGA
TGCGGTGGGTTCAACCCCGTCGTATGCGTCGTGTATGGGGCCCCGTCCTG
TGGGCAGGGCGATATGTTGGGGACTTTTAACATTGGTCTTTGCACGACTT
TGTCATTCTCTTACATATTAAGCCTCTTGTATCGTGTGACTGCACTAATG
TGCTGCCTCCGAGATCGCTTGACCTCTCTTCCCTTCCACCTCCTTTTCAC
CGACAACAGCTTCCCACACTTTTCAAAGTGCCGTGCAAGTTTCCCGTGTC
ACCAACCCAGCGGATGCCATAGAGATCAGCGAATTTTTTGTGACGTCCTT
CTGGGACGCTCCTATCACAAAGGCCAAACAAAAAGATCAATTGAAGAGCG
AAGTTTACCGAGACCTGACCACCCGTTACATCGGCAAGGGAGGAGCAGGA
GGAGGCGCATCAGCAGCATCAGCACGAGTACCAGCAGCGACAGGGATGGG
GAAATCGGCGCTGCTGGTCGCGAAGGAAGGAGGGAAGGTGATTGGATGTG
TGGGGTTAGAAACGCGAGTGATCCGCGAGGGGCAAGTCACTAAATTTGAG
GTGGTTGGAAAAGGAGACGCCCCAGGGACAAGCATTGGACCTGTAGTGGC
TAATCTAGCAGTGGATCGAAAGTTGAGAAGGAAGGGTATAGGAAAAAAGA
TATTGGCGGAGTGCGAGAAGATCGTGAAGGGGTGGGGGTTCCAGGTACGG
AGGGATGGGAGGAGGGCTGGGATGGGAGAAAGTGAGGGTGGCTATGGGTG
GTGA back to top Coding sequence (CDS) from alignment at chr13:544539..549139+
>NO13G01860.2 ID=NO13G01860.2|Name=NO13G01860.2|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr13:544539..549139+ (Nannochloropsis oceanica) back to top