NO13G01390.2, NO13G01390.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G01390.2
Unique Name	NO13G01390.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2709
Alignment location	chr13:423571..426547 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:423571..426547 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO13G01390.2 vs.

BLAST of NO13G01390.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G01390	NO13G01390	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G01390.2	NO13G01390.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G01390.2.cds1	NO13G01390.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01390.2.cds2	NO13G01390.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01390.2.cds3	NO13G01390.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:423571..426547+
coding sequence from alignment at chr13:423571..426547+

mRNA sequence

>NO13G01390.2 ID=NO13G01390.2|Name=NO13G01390.2|organism=Nannochloropsis oceanica|type=mRNA|length=2709bp
ACCACAGATGTATGGACGAGAACGAGGAGCACGACGACCGGAAAAATCTC
TCAAGGTCATCACCGTTCGATAACCCAAGGACTAACAGCCACGACCACGA
GGACGAGGAGCTCCTGACAACGGCCCGCCAGTATGAAGAGGAGGAAGAGG
AGGAAGATGAAGAGTACCGGGAGTTGGGGGAAGCTCTGGCTTCAAGCGGC
AGTCATCAGTATCAGCATCAGCGGGAGCAGCTCCCAGAGCACCAGCAACA
ACAGGAGCAGCAAGAGCCACCACTGCCGTTGGCGCACGAGAAGGAGGAGT
GGAATCAGGAGGAGGAGCTTGAGCATAGTTCTGCGCGGGTTTCTTTGCGA
CTGGAGGCCGCCACGCATGAATTGGAGGAGGTGCAAGACGCGTTGCAAAG
AGGCTCAGGGGAGAGCCAAGCGAATGGGAGTGAAACTCGACAGACTGCTC
GGAAGGGCCCAGAGGGGAGAAGAGTTGAGGAAAGTAGACGCGAGCCACCG
CTGAATAAAAGAGAGGGGGAAGAAAGACGGTATGATGCCGTTTTGTACGA
AGGCTCCAAAGATAGGACCACCTTGCCGTATCCTCCTTCTCCTCCTCCGC
CTGCAAGCAATAGCAGCAGCAGGATCAGCGGTGCCAAAGCAATCCAATGG
TCATCCATGGCTGCGTCCGATGCTTTTTCCTCCTCTTCTACTTCTTTCCA
CCCTTCCATGGCCTCCTCCTCCCCTTCCATCCACCGTCGCACATCATTTC
AAGTAAGGAGCGGCGACCCTTTCGGATTCACCAGCCGCAGAAAAAGAGGT
ACAAGCCTTGGAAATAGCGCAGCATCGGGAGGAGGCGGAGAAGCAAGGGG
AAGAGAACGTAGAGAACAGGCAGGAAATCTTGACCTACTCCAAAGGATGA
CGGAGCAACTTTCTTCCTCCTCTCCCACTGCTGCCACTCCTGCTGCTGCT
GCTTCGGCCCCTGCTCTCCTTCCCTTCTCCTCCTCCTCCTCGCCCTCCTT
CTCCTCCTCCTCCTCCTCCTCCACGACCACCACCACTACCATTTCGAAAC
CGACTCAAATCTTTCACGCCTCGTTACCATCATTCACATCTCATTATCCA
TCCTCCCCCTCTTCGCGCCTGCATGCGAAGCCAGCATTTGCCTCTGCTGC
TCCTACCACTGCTGAGACTAGCAGGAGTACCAAACGTGCAGCGAAGCTAC
AGAAGCAACGGCAGCAGCAGCAACAGGAGGAACAGCTCTATCACGATTGG
AAAAGAGGGGGCGAGGAGGAAGAGGAGGAAGAAGACAAGGGAGACGAAGA
AGAAATGACCCGGCTTTTGGGTCGAAGCACCGCCTCGTCCTCCCTCCCTT
CCTCCCTCCCTTCCTCATCCTCAGCGTCCGTGTTGTTGACTCGACGAGTA
CAACAGCAGCAGCTTGATCTCACCCGTTTGCAAGAGGAGAACGAATTGCT
GCAGCGACAGCTGGAGCAGCAGCAGCGCGTGCAGCAGGAAAGGCGGCAGG
AGGTGGTGCGATTGAGGAAGGGGGAGGTGGAAGGGAAGCAGAGGGAGGCG
GTTTTGGAGGCGAATAATGCGAGATTGGAGAGGGAACTAAAGGAGATTAG
AGGGGACATGGAGAGGATAATGACAGAACAAGCGGAGGTCTTGATTCAGA
GCGAGGCATGGAGGGAAGAGAATGAGCTCTTGTGCGCTCAGGTAGCAGAA
ATGAGAGCGAGAGCGGAGGGTGCGGAGGGTAAGGTATTGGAGATTCTGGA
GGAGCAACGAGGGATAATCAAGGAGGAGAGGAGGAAGGAGAGGGATGTGT
GGTTGCAGAAAATGATAGGCTTCGAAGGGCAATTGGACACAGCGTTGCAA
AAATTTGCGGCGGCGAAACAAGAAATCAATCAGTTGAAGAGCACCGGCAA
TGAGCAACGACAGGAGCTCCGAGCGATCCGTAAGGCCCTTCACCAGGCAC
ACGACGACAACAACAGGAAAAAACAAGCGATTTCGTCACTCCAAAGGCAT
CAGCATGAGCTCACCGAGCAGGCTTCGTTGGTTGTGCAGCAACAGACGGA
AGAATTAACACGGCTGAGGAAAATCGCACAGGAAGGGCAGGCCTTGAGGG
AGGAAGTGATGGTTCTGCAGGAGGAGGTGGAAAGATTGGAGGTAGAGCTG
GAGGGGAAGGAAAGTAAGGAGGGAGAGTGCGCGTCGTTGCTTGTGATGGT
GGAGGAGCAGCAGAGGATGATCGGGGAGATGGAGAGGAGGGAAAGAGTAT
GGAAGGAAGAAGGGTTGAGGGCGGGAGGGAGGGAGGCGGAGTGGAGGGGG
AGGGGGAAGATGTGGGCGAGGGAGAGGGCGGGCTTGGAGAAGGAGGTGAG
GGAGCTGAGATTCCAGTTGCAGAAGGCGTTGGCGAGGTGAAGGAAGAGGG
ATGGATTTATGGAGGGAGGGAGGGAGGGGAGGAACAAGAGTATCAATATT
TTATGACCAGACCACATAATTTTTTCCCAGGTGGTCCTCGCCTCGCGGGT
CCACACACACAGGTCCCTCTCCCTCCCTCCTCCACGCGCCATCTGAAAAA
GGGCTTCGTTTTCGCTTTCGCTAGCAACGAGTTAATTTCGCTGGCTTCAA
ACCCATTTCTCCAAATAATCTTTCTCCACACCTGTATGTTGTAGGGAACA
TCGCCCTGGGGCATTGAATAGGGTTAAAAGTAAAAAAGAACGACCCAACC
CAGCAGTCA

protein sequence of NO13G01390.2

>NO13G01390.2-protein ID=NO13G01390.2-protein|Name=NO13G01390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=793bp
MDENEEHDDRKNLSRSSPFDNPRTNSHDHEDEELLTTARQYEEEEEEEDE
EYRELGEALASSGSHQYQHQREQLPEHQQQQEQQEPPLPLAHEKEEWNQE
EELEHSSARVSLRLEAATHELEEVQDALQRGSGESQANGSETRQTARKGP
EGRRVEESRREPPLNKREGEERRYDAVLYEGSKDRTTLPYPPSPPPPASN
SSSRISGAKAIQWSSMAASDAFSSSSTSFHPSMASSSPSIHRRTSFQVRS
GDPFGFTSRRKRGTSLGNSAASGGGGEARGRERREQAGNLDLLQRMTEQL
SSSSPTAATPAAAASAPALLPFSSSSSPSFSSSSSSSTTTTTTISKPTQI
FHASLPSFTSHYPSSPSSRLHAKPAFASAAPTTAETSRSTKRAAKLQKQR
QQQQQEEQLYHDWKRGGEEEEEEEDKGDEEEMTRLLGRSTASSSLPSSLP
SSSSASVLLTRRVQQQQLDLTRLQEENELLQRQLEQQQRVQQERRQEVVR
LRKGEVEGKQREAVLEANNARLERELKEIRGDMERIMTEQAEVLIQSEAW
REENELLCAQVAEMRARAEGAEGKVLEILEEQRGIIKEERRKERDVWLQK
MIGFEGQLDTALQKFAAAKQEINQLKSTGNEQRQELRAIRKALHQAHDDN
NRKKQAISSLQRHQHELTEQASLVVQQQTEELTRLRKIAQEGQALREEVM
VLQEEVERLEVELEGKESKEGECASLLVMVEEQQRMIGEMERRERVWKEE
GLRAGGREAEWRGRGKMWARERAGLEKEVRELRFQLQKALAR*

mRNA from alignment at chr13:423571..426547+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G01390.2 ID=NO13G01390.2|Name=NO13G01390.2|organism=Nannochloropsis oceanica|type=mRNA|length=2977bp|location=Sequence derived from alignment at chr13:423571..426547+ (Nannochloropsis oceanica)
ACCACAGATGTATGGACGAGAACGAGGAGCACGACGACCGGAAAAATCTC
TCAAGGTCATCACCGTTCGATAACCCAAGGACTAACAGGTAAGTGAGCCA
CTCTTGCGCCAATCATCACGTTAGGTATTAATAACCCCCAACATGGCCAT
GGCCACAAAACCAGCCACGACCACGAGGACGAGGAGCTCCTGACAACGGC
CCGCCAGTATGAAGAGGAGGAAGAGGAGGAAGATGAAGAGTACCGGGAGT
TGGGGGAAGCTCTGGCTTCAAGCGGCAGTCATCAGTATCAGCATCAGCGG
GAGCAGCTCCCAGAGCACCAGCAACAACAGGAGCAGCAAGAGCCACCACT
GCCGTTGGCGCACGAGAAGGAGGAGTGGAATCAGGAGGAGGAGCTTGAGC
ATAGTTCTGCGCGGGTTTCTTTGCGACTGGAGGCCGCCACGCATGAATTG
GAGGAGGTGCAAGACGCGTTGCAAAGAGGCTCAGGGGAGAGCCAAGCGAA
TGGGAGTGAAACTCGACAGACTGCTCGGAAGGGCCCAGAGGGGAGAAGAG
TTGAGGAAAGTAGACGCGAGCCACCGCTGAATAAAAGAGAGGGGGAAGAA
AGACGGTATGATGCCGTTTTGTACGAAGGCTCCAAAGATAGGACCACCTT
GCCGTATCCTCCTTCTCCTCCTCCGCCTGCAAGCAATAGCAGCAGCAGGA
TCAGCGGTGCCAAAGCAATCCAATGGTCATCCATGGCTGCGTCCGATGCT
TTTTCCTCCTCTTCTACTTCTTTCCACCCTTCCATGGCCTCCTCCTCCCC
TTCCATCCACCGTCGCACATCATTTCAAGTAAGGAGCGGCGACCCTTTCG
GATTCACCAGCCGCAGAAAAAGAGGTACAAGCCTTGGAAATAGCGCAGCA
TCGGGAGGAGGCGGAGAAGCAAGGGGAAGAGAACGTAGAGAACAGGCAGG
AAATCTTGACCTACTCCAAAGGATGACGGAGCAACTTTCTTCCTCCTCTC
CCACTGCTGCCACTCCTGCTGCTGCTGCTTCGGCCCCTGCTCTCCTTCCC
TTCTCCTCCTCCTCCTCGCCCTCCTTCTCCTCCTCCTCCTCCTCCTCCAC
GACCACCACCACTACCATTTCGAAACCGACTCAAATCTTTCACGCCTCGT
TACCATCATTCACATCTCATTATCCATCCTCCCCCTCTTCGCGCCTGCAT
GCGAAGCCAGCATTTGCCTCTGCTGCTCCTACCACTGCTGAGACTAGCAG
GAGTACCAAACGTGCAGCGAAGCTACAGAAGCAACGGCAGCAGCAGCAAC
AGGAGGAACAGCTCTATCACGATTGGAAAAGAGGGGGCGAGGAGGAAGAG
GAGGAAGAAGACAAGGGAGACGAAGAAGAAATGACCCGGCTTTTGGGTCG
AAGCACCGCCTCGTCCTCCCTCCCTTCCTCCCTCCCTTCCTCATCCTCAG
CGTCCGTGTTGTTGACTCGACGAGTACAACAGCAGCAGCTTGATCTCACC
CGTTTGCAAGAGGAGAACGAATTGCTGCAGCGACAGCTGGAGCAGCAGCA
GCGCGTGCAGCAGGAAAGGCGGCAGGAGGTGGTGCGATTGAGGAAGGGGG
AGGTGGAAGGGAAGCAGAGGGAGGCGGTTTTGGAGGCGAATAATGCGAGA
TTGGAGAGGGAACTAAAGGAGATTAGAGGGGACATGGAGAGGATAATGAC
AGAACAAGCGGAGGTCTTGATTCAGAGCGAGGCATGGAGGGAAGAGAATG
AGCTCTTGTGCGCTCAGGTAGCAGAAATGAGAGCGAGAGCGGAGGGTGCG
GAGGGTAAGGTATTGGAGATTCTGGAGGAGCAACGAGGGATAATCAAGGA
GGAGAGGAGGAAGGAGAGGGATGTGTGGTTGCAGAAAATGATAGGCTTCG
AAGGGCAATTGGACACAGCGTTGCAAAAATTTGCGGCGGCGAAACAAGGT
ATGTGTGGGAGGGAAGGAAGGAGGGAGGGAGGGAAGGTAGGGAAGGTAGG
GAAGGTAGAAGTGTGCGGATGGGGAAACCATTGATATTGAGATGAAAGAA
GGAGGTTCCTTTTTGCGCCACCTTAACGTTCTTGAAGCCCTTTCCTTCCC
CACTTCCTCACTTCCTCTCTCCCCTCCTCCCTCCCTTTAGAAATCAATCA
GTTGAAGAGCACCGGCAATGAGCAACGACAGGAGCTCCGAGCGATCCGTA
AGGCCCTTCACCAGGCACACGACGACAACAACAGGAAAAAACAAGCGATT
TCGTCACTCCAAAGGCATCAGCATGAGCTCACCGAGCAGGCTTCGTTGGT
TGTGCAGCAACAGACGGAAGAATTAACACGGCTGAGGAAAATCGCACAGG
AAGGGCAGGCCTTGAGGGAGGAAGTGATGGTTCTGCAGGAGGAGGTGGAA
AGATTGGAGGTAGAGCTGGAGGGGAAGGAAAGTAAGGAGGGAGAGTGCGC
GTCGTTGCTTGTGATGGTGGAGGAGCAGCAGAGGATGATCGGGGAGATGG
AGAGGAGGGAAAGAGTATGGAAGGAAGAAGGGTTGAGGGCGGGAGGGAGG
GAGGCGGAGTGGAGGGGGAGGGGGAAGATGTGGGCGAGGGAGAGGGCGGG
CTTGGAGAAGGAGGTGAGGGAGCTGAGATTCCAGTTGCAGAAGGCGTTGG
CGAGGTGAAGGAAGAGGGATGGATTTATGGAGGGAGGGAGGGAGGGGAGG
AACAAGAGTATCAATATTTTATGACCAGACCACATAATTTTTTCCCAGGT
GGTCCTCGCCTCGCGGGTCCACACACACAGGTCCCTCTCCCTCCCTCCTC
CACGCGCCATCTGAAAAAGGGCTTCGTTTTCGCTTTCGCTAGCAACGAGT
TAATTTCGCTGGCTTCAAACCCATTTCTCCAAATAATCTTTCTCCACACC
TGTATGTTGTAGGGAACATCGCCCTGGGGCATTGAATAGGGTTAAAAGTA
AAAAAGAACGACCCAACCCAGCAGTCA

Coding sequence (CDS) from alignment at chr13:423571..426547+

>NO13G01390.2 ID=NO13G01390.2|Name=NO13G01390.2|organism=Nannochloropsis oceanica|type=CDS|length=2379bp|location=Sequence derived from alignment at chr13:423571..426547+ (Nannochloropsis oceanica)
ATGGACGAGAACGAGGAGCACGACGACCGGAAAAATCTCTCAAGGTCATC
ACCGTTCGATAACCCAAGGACTAACAGCCACGACCACGAGGACGAGGAGC
TCCTGACAACGGCCCGCCAGTATGAAGAGGAGGAAGAGGAGGAAGATGAA
GAGTACCGGGAGTTGGGGGAAGCTCTGGCTTCAAGCGGCAGTCATCAGTA
TCAGCATCAGCGGGAGCAGCTCCCAGAGCACCAGCAACAACAGGAGCAGC
AAGAGCCACCACTGCCGTTGGCGCACGAGAAGGAGGAGTGGAATCAGGAG
GAGGAGCTTGAGCATAGTTCTGCGCGGGTTTCTTTGCGACTGGAGGCCGC
CACGCATGAATTGGAGGAGGTGCAAGACGCGTTGCAAAGAGGCTCAGGGG
AGAGCCAAGCGAATGGGAGTGAAACTCGACAGACTGCTCGGAAGGGCCCA
GAGGGGAGAAGAGTTGAGGAAAGTAGACGCGAGCCACCGCTGAATAAAAG
AGAGGGGGAAGAAAGACGGTATGATGCCGTTTTGTACGAAGGCTCCAAAG
ATAGGACCACCTTGCCGTATCCTCCTTCTCCTCCTCCGCCTGCAAGCAAT
AGCAGCAGCAGGATCAGCGGTGCCAAAGCAATCCAATGGTCATCCATGGC
TGCGTCCGATGCTTTTTCCTCCTCTTCTACTTCTTTCCACCCTTCCATGG
CCTCCTCCTCCCCTTCCATCCACCGTCGCACATCATTTCAAGTAAGGAGC
GGCGACCCTTTCGGATTCACCAGCCGCAGAAAAAGAGGTACAAGCCTTGG
AAATAGCGCAGCATCGGGAGGAGGCGGAGAAGCAAGGGGAAGAGAACGTA
GAGAACAGGCAGGAAATCTTGACCTACTCCAAAGGATGACGGAGCAACTT
TCTTCCTCCTCTCCCACTGCTGCCACTCCTGCTGCTGCTGCTTCGGCCCC
TGCTCTCCTTCCCTTCTCCTCCTCCTCCTCGCCCTCCTTCTCCTCCTCCT
CCTCCTCCTCCACGACCACCACCACTACCATTTCGAAACCGACTCAAATC
TTTCACGCCTCGTTACCATCATTCACATCTCATTATCCATCCTCCCCCTC
TTCGCGCCTGCATGCGAAGCCAGCATTTGCCTCTGCTGCTCCTACCACTG
CTGAGACTAGCAGGAGTACCAAACGTGCAGCGAAGCTACAGAAGCAACGG
CAGCAGCAGCAACAGGAGGAACAGCTCTATCACGATTGGAAAAGAGGGGG
CGAGGAGGAAGAGGAGGAAGAAGACAAGGGAGACGAAGAAGAAATGACCC
GGCTTTTGGGTCGAAGCACCGCCTCGTCCTCCCTCCCTTCCTCCCTCCCT
TCCTCATCCTCAGCGTCCGTGTTGTTGACTCGACGAGTACAACAGCAGCA
GCTTGATCTCACCCGTTTGCAAGAGGAGAACGAATTGCTGCAGCGACAGC
TGGAGCAGCAGCAGCGCGTGCAGCAGGAAAGGCGGCAGGAGGTGGTGCGA
TTGAGGAAGGGGGAGGTGGAAGGGAAGCAGAGGGAGGCGGTTTTGGAGGC
GAATAATGCGAGATTGGAGAGGGAACTAAAGGAGATTAGAGGGGACATGG
AGAGGATAATGACAGAACAAGCGGAGGTCTTGATTCAGAGCGAGGCATGG
AGGGAAGAGAATGAGCTCTTGTGCGCTCAGGTAGCAGAAATGAGAGCGAG
AGCGGAGGGTGCGGAGGGTAAGGTATTGGAGATTCTGGAGGAGCAACGAG
GGATAATCAAGGAGGAGAGGAGGAAGGAGAGGGATGTGTGGTTGCAGAAA
ATGATAGGCTTCGAAGGGCAATTGGACACAGCGTTGCAAAAATTTGCGGC
GGCGAAACAAGAAATCAATCAGTTGAAGAGCACCGGCAATGAGCAACGAC
AGGAGCTCCGAGCGATCCGTAAGGCCCTTCACCAGGCACACGACGACAAC
AACAGGAAAAAACAAGCGATTTCGTCACTCCAAAGGCATCAGCATGAGCT
CACCGAGCAGGCTTCGTTGGTTGTGCAGCAACAGACGGAAGAATTAACAC
GGCTGAGGAAAATCGCACAGGAAGGGCAGGCCTTGAGGGAGGAAGTGATG
GTTCTGCAGGAGGAGGTGGAAAGATTGGAGGTAGAGCTGGAGGGGAAGGA
AAGTAAGGAGGGAGAGTGCGCGTCGTTGCTTGTGATGGTGGAGGAGCAGC
AGAGGATGATCGGGGAGATGGAGAGGAGGGAAAGAGTATGGAAGGAAGAA
GGGTTGAGGGCGGGAGGGAGGGAGGCGGAGTGGAGGGGGAGGGGGAAGAT
GTGGGCGAGGGAGAGGGCGGGCTTGGAGAAGGAGGTGAGGGAGCTGAGAT
TCCAGTTGCAGAAGGCGTTGGCGAGGTGA

Synonyms

Publications