NO13G01030.1, NO13G01030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G01030.1
Unique Name	NO13G01030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2427
Alignment location	chr13:329316..332525 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:329316..332525 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO13G01030.1 vs.
Match: EWM21781.1 (cysteine dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 420.2 bits (1079), Expect = 6.600e-114
Identity = 228/410 (55.61%), Postives = 263/410 (64.15%), Query Frame = 0

Query:    1 MPPSILGRLINIWGTSPPAGDH-----------------ATHPLTHHHRGQGSWVQPGALIEKGE-----EEKEGEEYAPTKKGGERGGREAGPGNAKVVSTMTKGMGNVTLVGAG-----KEPSSSSSA-----------YFFSDQDGRMLQGLLHPTCLEMAVTPSPRTLPPHGHTRAFSFMNDLGHGPLSLEEFTSILPTVLERCHLRNMKKCEPVKRLLDRLELRREEWEPYAFWDADKLYTRNLVATDGKTFTLLLLCWNPGKESPIHDHPCDGCWVKCAEGTVKETIYLVDDQRGLVAEQENYFRPGELSYIEDSLGFHKVGNPDAALGAVTFHCYIPPPKSTRVWLAARTAAADAMVVPTCLYSAFGKRVKEGGREGGKEGAHLMAVGAGEIICSPPVRMEGG 373
            MPPSI  RLINI G+SPP  DH                  T P      G          +E        +    +   P  KGG+ G +    G  + +S+    M  +   GA      +E SSSS +           +FFSDQDG++L+G    + L++A+ P      PH H R  S+M DLG G LSLEEF+ ILPTVL+RC+LRNMK CEPVKRLL RLELRRE+W PYAFWD DKLYTRNLVATDGKTFTLLLLCWNPGKESPIHDHPCDGCWVKCA+GTVKETIY +D  R LVAE+E YF PGELSYIEDSLGFHKVGNPD  +GAVT HCYIPPP+S RVWL  RTA +D+M VPTCLYSAFG+RVKEGGRE GKEG  +  + A E       R EGG
Sbjct:   45 MPPSIFERLINILGSSPPDSDHHRPYDQESYKVRRALSDCTIPDDLREEGAEPPAVKAGRLEFSRASDVLDNTSKDSRNPLPKGGDGGQKS---GRRQHISSYASKMAPLEDEGAREKDMKREASSSSCSSTGPCSSTPKEFFFSDQDGKILRGDSRASSLDVAIPPLNGHDHPH-HVRVISWMKDLGEGALSLEEFSMILPTVLKRCNLRNMKMCEPVKRLLGRLELRREDWSPYAFWDPDKLYTRNLVATDGKTFTLLLLCWNPGKESPIHDHPCDGCWVKCAQGTVKETIYQMDGGRSLVAEEEKYFYPGELSYIEDSLGFHKVGNPDPVIGAVTLHCYIPPPRSARVWLPTRTAVSDSMTVPTCLYSAFGQRVKEGGREMGKEGPTITDLRAVEEQRKDKSRREGG 450

The following BLAST results are available for this feature:

BLAST of NO13G01030.1 vs.

BLAST of NO13G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21781.1	6.600e-114	55.61	cysteine dioxygenase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G01030	NO13G01030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G01030.1	NO13G01030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G01030.1.cds1	NO13G01030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01030.1.cds2	NO13G01030.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01030.1.cds3	NO13G01030.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01030.1.cds4	NO13G01030.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01030.1.cds5	NO13G01030.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01030.1.cds6	NO13G01030.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:329316..332525-
coding sequence from alignment at chr13:329316..332525-

mRNA sequence

>NO13G01030.1 ID=NO13G01030.1|Name=NO13G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp
TGTAGTTTTGTTGCAGGGAACGACAGACAGAGTGAATAAGACGTGACATA
CGGGGAAAGTGCCCGCCCATGTTTCCTCAATCGAGCGTCTCGCGGCCATC
ATCGGGAAGGACATGTGTCGGAGGTAATCGCCTTCCCCTTTTCCCTGTGG
CATAAGTTGCATGACCGAGTGAACGCCATCTCTTGCTCCACACACGCACA
GGTACGTGCACAAGGTAGAGTCAGCGCATCCAAACAAGCCCACGCCAAGA
CGAAGGCCTGGACACAAGCCACATCGCTGAGACTTTGCTAGGCGGCGTCA
CACTATATACAAGCAACGCGCGTTGTCTGCTACTTCCTCATCAACGCCCC
CGTGCACAATATGCCTCCCTCCATACTCGGTCGTCTGATTAACATCTGGG
GCACCAGTCCTCCTGCTGGCGACCATGCCACCCATCCTCTCACCCATCAC
CACCGTGGCCAAGGTAGCTGGGTACAGCCGGGCGCGTTGATTGAGAAAGG
GGAAGAAGAAAAAGAGGGAGAGGAATATGCGCCCACAAAAAAAGGAGGAG
AAAGGGGCGGGAGGGAGGCAGGGCCGGGGAATGCCAAGGTTGTCTCGACA
ATGACCAAAGGGATGGGAAACGTGACGTTGGTGGGCGCTGGGAAGGAGCC
CTCCTCCTCCTCGTCAGCCTATTTCTTTAGCGACCAAGACGGGCGGATGC
TTCAAGGACTCTTGCACCCCACTTGCCTTGAGATGGCGGTAACCCCCTCC
CCGCGCACCCTCCCTCCCCACGGGCACACACGCGCCTTCTCCTTCATGAA
TGATTTGGGTCATGGCCCATTAAGCCTGGAGGAGTTCACCTCGATCCTGC
CCACGGTACTAGAACGATGCCATCTCCGGAATATGAAAAAGTGCGAACCA
GTGAAGCGCCTGCTTGATCGTTTGGAGCTTCGCCGGGAGGAATGGGAGCC
CTACGCATTCTGGGATGCAGACAAGCTGTATACCCGGAATTTGGTCGCCA
CTGACGGCAAGACTTTCACCCTCCTCCTCCTGTGCTGGAATCCAGGCAAG
GAATCGCCCATCCACGACCACCCTTGCGACGGGTGCTGGGTGAAATGCGC
GGAAGGCACGGTGAAAGAAACGATTTACTTGGTCGACGACCAGAGGGGAT
TGGTGGCAGAGCAGGAGAACTACTTCCGTCCGGGCGAGCTGTCGTACATT
GAAGACTCCCTGGGTTTCCACAAAGTAGGCAATCCGGATGCTGCCCTCGG
TGCAGTCACGTTCCATTGCTACATCCCTCCCCCCAAATCTACTCGTGTCT
GGCTTGCGGCACGCACTGCAGCCGCGGATGCCATGGTAGTCCCCACCTGT
TTGTATTCGGCCTTCGGAAAGAGGGTGAAGGAGGGAGGAAGAGAGGGAGG
GAAGGAAGGGGCGCACTTGATGGCAGTAGGTGCAGGCGAGATAATTTGCT
CGCCGCCGGTGAGGATGGAAGGGGGGAAAGAGGAGGAGTAAAAAAAGGGT
GAGAAGGAGGAAGAGGAGGCTGAAGCGGCTTGGATGCATGTCGCCTTGCC
CAATTTTATCGCCGGTGTAAAATGAAAGCGTGGAATAGAAGAGAATGCAG
AGGAAGGAGAAGGAGGAGGGGGTTATGATGTTTCTTTGAACCGGAAGGCA
GATGGGCGGAGGAAGAGAAGAGTTGAGTGGCCCTCTGCATTATTTTTTGG
AGATGACATTCAACAAACAGGAAGAGAGGCTCGAAGAGAATAAAGAAGGC
AGAGAAAAGAGAGAGAGGGAGGACAAGAAATGTTTCGATTTCGGCGTACC
ATTGCGAACATGCGCTGTACTATCGTGCAGGACAAGAGGGGAAAACATCC
GCCTGGTAGCCTCAGTTGTAGAGAGAAAGAGTGAATGCCGGAGGGCCTTG
TATAGAATGTGGGCATGCGCATGCGAAATCGATTGATGAAGACAAAATAC
ATAGCTTAGACTCTTCCGTCGTTGTTTGATTGACTCGGAGAGAAAGAGGT
GGGAAAGTTACCATCAAACAAAGTGGCACTCTGCTGTACGTGAAATACTA
CTGTATGGGGAGATGTAAGAAAGAGAGACGCAACAGTTAGATGTGAATGT
GTAAGGTGTGAAAAAGAAAGGCAAGAAGAATAAGTATGGGAGATATAAAA
TGTAAGACAGAGGAAGGAAAAGAAAGGGAAACACACAACTTAAAAAATGT
AGAGATGACGATGTGAAAAGTAGCAGGCCCGATCAGTCAATGTGTGTGTC
GAGGAAAGTTGAGGGCGCTTAAGAATCTTTTTGGGGCGTCCTTGTTCTCA
ACAGCAGCAAAAAGAGTAGAACACCAATAACAATTGTAGATTTGGGATGT
GAAAGATAGAATGGCACATGTATCAAAACTAATTAAACAGGCCATACGCT
TTCAAATCTTAGCTTCGTGGCTCGTCG

protein sequence of NO13G01030.1

>NO13G01030.1-protein ID=NO13G01030.1-protein|Name=NO13G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MPPSILGRLINIWGTSPPAGDHATHPLTHHHRGQGSWVQPGALIEKGEEE
KEGEEYAPTKKGGERGGREAGPGNAKVVSTMTKGMGNVTLVGAGKEPSSS
SSAYFFSDQDGRMLQGLLHPTCLEMAVTPSPRTLPPHGHTRAFSFMNDLG
HGPLSLEEFTSILPTVLERCHLRNMKKCEPVKRLLDRLELRREEWEPYAF
WDADKLYTRNLVATDGKTFTLLLLCWNPGKESPIHDHPCDGCWVKCAEGT
VKETIYLVDDQRGLVAEQENYFRPGELSYIEDSLGFHKVGNPDAALGAVT
FHCYIPPPKSTRVWLAARTAAADAMVVPTCLYSAFGKRVKEGGREGGKEG
AHLMAVGAGEIICSPPVRMEGGKEEE*

mRNA from alignment at chr13:329316..332525-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G01030.1 ID=NO13G01030.1|Name=NO13G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3210bp|location=Sequence derived from alignment at chr13:329316..332525- (Nannochloropsis oceanica)
TGTAGTTTTGTTGCAGGGAACGACAGACAGAGTGAATAAGACGTGACATA
CGGGGAAAGTGCCCGCCCATGTTTCCTCAATCGAGCGTCTCGCGGCCATC
ATCGGGAAGGACATGTGTCGGAGGTAATCGCCTTCCCCTTTTCCCTGTGG
CATAAGTTGCATGACCGAGTGAACGCCATCTCTTGCTCCACACACGCACA
GGTACGTGCACAAGGTAGAGTCAGCGCATCCAAACAAGCCCACGCCAAGA
CGAAGGCCTGGACACAAGCCACATCGCTGAGACTTTGCTAGGCGGCGTCA
CACTATATACAAGCAACGCGCGTTGTCTGCTACTTCCTCATCAACGCCCC
CGTGCACAATATGCCTCCCTCCATACTCGGTCGTCTGATTAACATCTGGG
GCACCAGTCCTCCTGGTACGTGTGTTTTTTCTAAATTGTCCGTCCGAACT
TGCGAGCTTGCTTTTCCGCAGGCGGCACCTCTTCCTTAGACCTCCTTCCT
GCCCTCCTCACCTTGAAACCATTGCAACCTGTTTCTGTCTCAAAACACAG
CTGGCGACCATGCCACCCATCCTCTCACCCATCACCACCGTGGCCAAGGT
AGCTGGGTACAGCCGGGCGCGTTGATTGAGAAAGGGGAAGAAGAAAAAGA
GGGAGAGGAATATGCGCCCACAAAAAAAGGAGGAGAAAGGGGCGGGAGGG
AGGCAGGGCCGGGGAATGCCAAGGTTGTCTCGACAATGACCAAAGGGATG
GGAAACGTGACGTTGGTGGGCGCTGGGAAGGAGCCCTCCTCCTCCTCGTC
AGCCTATTTCTTTAGCGACCAAGACGGGCGGATGCTTCAAGGACTCTTGC
ACCCCACTTGCCTTGAGGTACGCACTTATTCTCGATGCTGGCCCATCCGA
TCACTCCTTATTTCCCTCCCTCCCTCCTCCCCTCCCTCCTTCTGTCGCCC
TCTCCCTAGATGGCGGTAACCCCCTCCCCGCGCACCCTCCCTCCCCACGG
GCACACACGCGCCTTCTCCTTCATGAATGATTTGGGTCATGGCCCATTAA
GCCTGGAGGAGTTCACCTCGATCCTGCCCACGGTACTAGAACGATGCCAT
CTCCGGAATATGAAAAAGTGCGAACCAGTGAAGCGCCTGCTTGAGTAAGT
GGAAGGACGACGAAGGGAGAATGGAGAGGGAGGGAGGTGTTGCCATACGC
CGTCTGGCAGGGTAGTCTCACATCCACTCCTCACACGATTCCACCCCCCT
CCCCTATTAAGTCGTTTGGAGCTTCGCCGGGAGGAATGGGAGCCCTACGC
ATTCTGGGATGCAGACAAGCTGTATACCCGGAATTTGGTCGCCACTGACG
GCAAGACTTTCACCCTCCTCCTCCTGTGCTGGAATCCAGGCAAGGTAGGT
TTGGTGTGGTGTCCCTTGCCTTCCTTCCTCCCGCGATCTCCTCCTTGGAT
GGAGGGATCGACAGCAATGCGGCGTCTGTGTATTAAGGTCAAGTTGCGAG
GATTGTTAACCCCCTCGCATGTCCCTCTCTTTGTCTTTGTTTTCTCAAAC
CTCGCCTTTCCCTCTCTCCGTCGTTTTATTCCGAACCCCCTCGCATGTCC
CCCTCTTTGTCTTAATTTTCTTAACCCTCGCCTCCCTCTTTCTCTCTCTC
CCCCTCTCTTGATCCCTCTGCAGGAATCGCCCATCCACGACCACCCTTGC
GACGGGTGCTGGGTGAAATGCGCGGAAGGCACGGTGAAAGAAACGATTTA
CTTGGTCGACGACCAGAGGGGATTGGTGGCAGAGCAGGAGAACTACTTCC
GTCCGGGCGAGCTGTCGTACATTGAAGGTGAAGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAAGGAGTTTCCTGTCCCATCGTCAGGGCAATTGGGATAT
CACGCTTCACTTCGACATATCATGACGCGCCTCTCCTTCCCCTCCCCTCC
CTTCCCCTCCTATCCACCCCCTTCCCCCTCGCCCCAGACTCCCTGGGTTT
CCACAAAGTAGGCAATCCGGATGCTGCCCTCGGTGCAGTCACGTTCCATT
GCTACATCCCTCCCCCCAAATCTACTCGTGTCTGGCTTGCGGCACGCACT
GCAGCCGCGGATGCCATGGTAGTCCCCACCTGTTTGTATTCGGCCTTCGG
AAAGAGGGTGAAGGAGGGAGGAAGAGAGGGAGGGAAGGAAGGGGCGCACT
TGATGGCAGTAGGTGCAGGCGAGATAATTTGCTCGCCGCCGGTGAGGATG
GAAGGGGGGAAAGAGGAGGAGTAAAAAAAGGGTGAGAAGGAGGAAGAGGA
GGCTGAAGCGGCTTGGATGCATGTCGCCTTGCCCAATTTTATCGCCGGTG
TAAAATGAAAGCGTGGAATAGAAGAGAATGCAGAGGAAGGAGAAGGAGGA
GGGGGTTATGATGTTTCTTTGAACCGGAAGGCAGATGGGCGGAGGAAGAG
AAGAGTTGAGTGGCCCTCTGCATTATTTTTTGGAGATGACATTCAACAAA
CAGGAAGAGAGGCTCGAAGAGAATAAAGAAGGCAGAGAAAAGAGAGAGAG
GGAGGACAAGAAATGTTTCGATTTCGGCGTACCATTGCGAACATGCGCTG
TACTATCGTGCAGGACAAGAGGGGAAAACATCCGCCTGGTAGCCTCAGTT
GTAGAGAGAAAGAGTGAATGCCGGAGGGCCTTGTATAGAATGTGGGCATG
CGCATGCGAAATCGATTGATGAAGACAAAATACATAGCTTAGACTCTTCC
GTCGTTGTTTGATTGACTCGGAGAGAAAGAGGTGGGAAAGTTACCATCAA
ACAAAGTGGCACTCTGCTGTACGTGAAATACTACTGTATGGGGAGATGTA
AGAAAGAGAGACGCAACAGTTAGATGTGAATGTGTAAGGTGTGAAAAAGA
AAGGCAAGAAGAATAAGTATGGGAGATATAAAATGTAAGACAGAGGAAGG
AAAAGAAAGGGAAACACACAACTTAAAAAATGTAGAGATGACGATGTGAA
AAGTAGCAGGCCCGATCAGTCAATGTGTGTGTCGAGGAAAGTTGAGGGCG
CTTAAGAATCTTTTTGGGGCGTCCTTGTTCTCAACAGCAGCAAAAAGAGT
AGAACACCAATAACAATTGTAGATTTGGGATGTGAAAGATAGAATGGCAC
ATGTATCAAAACTAATTAAACAGGCCATACGCTTTCAAATCTTAGCTTCG
TGGCTCGTCG

Coding sequence (CDS) from alignment at chr13:329316..332525-

>NO13G01030.1 ID=NO13G01030.1|Name=NO13G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr13:329316..332525- (Nannochloropsis oceanica)
ATGCCTCCCTCCATACTCGGTCGTCTGATTAACATCTGGGGCACCAGTCC
TCCTGCTGGCGACCATGCCACCCATCCTCTCACCCATCACCACCGTGGCC
AAGGTAGCTGGGTACAGCCGGGCGCGTTGATTGAGAAAGGGGAAGAAGAA
AAAGAGGGAGAGGAATATGCGCCCACAAAAAAAGGAGGAGAAAGGGGCGG
GAGGGAGGCAGGGCCGGGGAATGCCAAGGTTGTCTCGACAATGACCAAAG
GGATGGGAAACGTGACGTTGGTGGGCGCTGGGAAGGAGCCCTCCTCCTCC
TCGTCAGCCTATTTCTTTAGCGACCAAGACGGGCGGATGCTTCAAGGACT
CTTGCACCCCACTTGCCTTGAGATGGCGGTAACCCCCTCCCCGCGCACCC
TCCCTCCCCACGGGCACACACGCGCCTTCTCCTTCATGAATGATTTGGGT
CATGGCCCATTAAGCCTGGAGGAGTTCACCTCGATCCTGCCCACGGTACT
AGAACGATGCCATCTCCGGAATATGAAAAAGTGCGAACCAGTGAAGCGCC
TGCTTGATCGTTTGGAGCTTCGCCGGGAGGAATGGGAGCCCTACGCATTC
TGGGATGCAGACAAGCTGTATACCCGGAATTTGGTCGCCACTGACGGCAA
GACTTTCACCCTCCTCCTCCTGTGCTGGAATCCAGGCAAGGAATCGCCCA
TCCACGACCACCCTTGCGACGGGTGCTGGGTGAAATGCGCGGAAGGCACG
GTGAAAGAAACGATTTACTTGGTCGACGACCAGAGGGGATTGGTGGCAGA
GCAGGAGAACTACTTCCGTCCGGGCGAGCTGTCGTACATTGAAGACTCCC
TGGGTTTCCACAAAGTAGGCAATCCGGATGCTGCCCTCGGTGCAGTCACG
TTCCATTGCTACATCCCTCCCCCCAAATCTACTCGTGTCTGGCTTGCGGC
ACGCACTGCAGCCGCGGATGCCATGGTAGTCCCCACCTGTTTGTATTCGG
CCTTCGGAAAGAGGGTGAAGGAGGGAGGAAGAGAGGGAGGGAAGGAAGGG
GCGCACTTGATGGCAGTAGGTGCAGGCGAGATAATTTGCTCGCCGCCGGT
GAGGATGGAAGGGGGGAAAGAGGAGGAGTAA

Synonyms

Publications