NO13G00390.1, NO13G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00390.1
Unique NameNO13G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr13:128096..129149 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:128096..129149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00390NO13G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00390.1NO13G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00390.1.cds1NO13G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00390.1.cds2NO13G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00390.1.cds3NO13G00390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00390.1.cds4NO13G00390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00390.1 ID=NO13G00390.1|Name=NO13G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGCATCTTTCTCCTCGCGTCATCCAGGCCAAAATTCTGATGGGGAGCCA
CGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAACGTGGACACCAACGACG
ACACCAAGGGCGCACCGTTCATCCTCCGCCGACGTCAGTACCCGGTCCGG
CCTGCCTTCGCCCATCATGACCATAAACAAATCTCAGGGGCAGACCTTCA
AAAAAGTCGCAATCTACTTGCTGTCCTCGCGCTCTCGAGAGTAGGAGACC
CCACCAACATCACCATGATGGTCACCCAGCCTCCTCTGCGGTCAGCTCCC
TTACGGACTATACAGAAGGTTATATCAACAAAACGATGGATTAAACATGA
AGGATCAACGCAGCCAAAACAGCAGCCATCGGTGGAATCCAGAAGAGGTC
AGACTTCTGGTTGA
back to top

protein sequence of NO13G00390.1

>NO13G00390.1-protein ID=NO13G00390.1-protein|Name=NO13G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MHLSPRVIQAKILMGSHVGQVVCLPRINVDTNDDTKGAPFILRRRQYPVR
PAFAHHDHKQISGADLQKSRNLLAVLALSRVGDPTNITMMVTQPPLRSAP
LRTIQKVISTKRWIKHEGSTQPKQQPSVESRRGQTSG*
back to top

mRNA from alignment at chr13:128096..129149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00390.1 ID=NO13G00390.1|Name=NO13G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp|location=Sequence derived from alignment at chr13:128096..129149+ (Nannochloropsis oceanica)
ATGCATCTTTCTCCTCGCGTCATCCAGGCCAAAATTCTGATGGGGAGCCA
CGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAACGTGGACACCAACGACG
ACACCAAGGGCGCACCGTTCATCCTCCGCCGACGTCAGTACCCGGTCCGG
CCTGCCTTCGCCCATCATGACCATAAACAAATCTCAGGGGCAGACCTTCA
AAAAAGTCGCAATCTACTTGCTGTCCTCGCGCTCTCGAGAGTAGGAGACC
CCACCAACATCACCATGATGGTCACCCAGCCTCCTCTGCGGTCAGCTCCC
TTACGGACTATACAGAAGGTTATGTAAGTTTTTTGCTCTTTTTACTTTTT
TGGGGTTTTAATCACCATAACGAGCCTTGTCACCGGCATAAAGACATCTC
CTTCTATCACGTTATGAGCACCAAAATAAGACCGCCCCGCATGACGGGGA
AGCTGCCGGCATCAGTCCAGTGGTGACTGAGGTGGTTTCATGTACATGGA
CACTTGTTCATTTATCGACCACATTGGGTGTAGTAAGTGCGGAAGAGGGC
TGGCCGCAGAGGAGGCTGGGTGACCATCATGGTGATGTTGGTGGGGTCTC
CTACTCTCGAGAGCGCGAAATGCAGTTCACCGTGAGCAAACACCGGGGAC
AGCAAGTAGATTACGATCCCCTCCTCCTTGCATAGATCAACAAAACGATG
TACGTCAACATCGTTTTCGGTTGGAATCATCGTGTGTATAACTAAGATGG
CTACGACTATATGAACATGACGATCGGCGACTATCGACTATCGTAACGTG
CAGCCCAGCCGCCCATTATCGTAACGTGCAGCTAATTTTTGCAGTGTGTG
TGTATTGTGAGCACCGTGAACTCAAGTGATTATCACCCACTTGTACAGGG
ATTAAACATGAAGGATCAACGCAGCCAAAACAGCAGCCATCGGTGGAATC
CAGAAGAGGTATTTTTTATTTAAATAATTATTTAATTCTATCTCAGACTT
ATCTTTTCTTTCTCTATCGTCTTCTTTCCCCATATAGGTCAGACTTCTGG
TTGA
back to top

Coding sequence (CDS) from alignment at chr13:128096..129149+

>NO13G00390.1 ID=NO13G00390.1|Name=NO13G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr13:128096..129149+ (Nannochloropsis oceanica)
ATGCATCTTTCTCCTCGCGTCATCCAGGCCAAAATTCTGATGGGGAGCCA
CGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAACGTGGACACCAACGACG
ACACCAAGGGCGCACCGTTCATCCTCCGCCGACGTCAGTACCCGGTCCGG
CCTGCCTTCGCCCATCATGACCATAAACAAATCTCAGGGGCAGACCTTCA
AAAAAGTCGCAATCTACTTGCTGTCCTCGCGCTCTCGAGAGTAGGAGACC
CCACCAACATCACCATGATGGTCACCCAGCCTCCTCTGCGGTCAGCTCCC
TTACGGACTATACAGAAGGTTATATCAACAAAACGATGGATTAAACATGA
AGGATCAACGCAGCCAAAACAGCAGCCATCGGTGGAATCCAGAAGAGGTC
AGACTTCTGGTTGA
back to top
Synonyms
Publications