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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:96744..100674 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00260.2 vs.
Match: EWM22838.1 (hypothetical protein Naga_100295g2 [Nannochloropsis gaditana]) HSP 1 Score: 404.4 bits (1038), Expect = 4.400e-109 Identity = 202/313 (64.54%), Postives = 244/313 (77.96%), Query Frame = 0
Query: 132 AVVYMSMIYLVVGRVSSPSLSLLNATTSTSYSTNLRGASSSSSSPSLSKFRNNPLPSLPNSAALTHLIVVAGHAVTITESLEGVEEEDHVWYLLPYQKAQDLPATFVAHIKAGVSLAQRDPASLLVFSGGQTRVDAGPWSEGAAYYRVAEHFGWWDPASDPSPEVKGRALAEEYALDSFENLLYSICRFKEYTGHYPTRITVVSFAFKRARFLSHHRGALRFPEAQFEYMGLDPPPEGRFDRKKAVEGEYHDALKLFESDPYGCHSKTLQEKRASRNPFRRTAPYALACPEIAPLLEYCQRTIYPHALPWDAH 445
AV+Y+ I L+ GR PS S T + S+ RG+S+S S RN+ + + +L HLI+VAGHAVTI+ESLEG E +D VWYLLPYQ+ QDLPATFV+HI+ GV LA+RDPASLL+FSGGQTR +AGP SEG++YYRVAEHFGWWD AS PS +VK RAL E+YALDS ENLLYSICRFKEYT HYPTRI+VVSFAFK+ RF HHR ALRFP+++F ++G+DPP G+FD KKA +GE ++A+KLFESDPYGC+SK LQEK A RNPF RT PY +CPE+APLLEYC+ TIYP LPWD+H
Sbjct: 60 AVLYLYSIVLLKGRRFMPSSSS-PPTPTLGLSSRPRGSSASLRSSYSGSLRNSFHRNSRGTESLNHLIMVAGHAVTISESLEGAETDDAVWYLLPYQRDQDLPATFVSHIRTGVELAKRDPASLLIFSGGQTRAEAGPRSEGSSYYRVAEHFGWWDSASSPS-DVKKRALTEDYALDSIENLLYSICRFKEYTDHYPTRISVVSFAFKQKRFRFHHRAALRFPDSRFAFVGVDPPIGGKFDHKKAEKGELNEAVKLFESDPYGCNSKKLQEKHAERNPFMRTMPYTFSCPEVAPLLEYCESTIYPDPLPWDSH 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00260.2 ID=NO13G00260.2|Name=NO13G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=3079bp CCCCCCTCCCCCTCATAACCAGCCAATCCGCCAGCACGACCGCAACAAAC ACTACCACATTATCCCACCCCTCCGGAACCGGTAATGTCTCCGCCGCCGC ACTCAACAACGTGGCCCCCCACACCCTCTCCCCCACCCCCCTCCTCCCTC TCTCTGCAACGGCGATCCACCCGTGGTATTGGAAATATGCCGCGAGGCAG AAAGAGGTCAAGACACTGGCAGCGATGAAGCCCAGCGTGCCCACCCACGA CTTGCTACGACACCAGGGAATCCGCCCTCTTTGTTGTGGTTGTTGTTGTT GTTGTTGTGGTTGGTCGTGGTGGTGGTGTTGGAGTTGTGGCTCTGACTGC CATGTGAGTTTTTTTCCGTCGTCGTCGTGTTTCACGTTTTGAATCGCCAA AGGTGCACACCGACGACCAATCAAGTCCGCGAAGCCGTCGCCCGCACACA GGCACGAAATACACAGGGCGGCAGTCAGGTGCCGCCAGTACACCAGCGTA GCAACGATCATGACGCTTCCATACAAGAAAGGCCCGCGCAACAACTCCTG CCGGGCGCCGGTCCTGCTCATGCTTTGCACGGTCGCCTGATTTTGTGCTA TTCCCAGGCCGACAAGTGTGAAGAAAGACGTCAAGGCCAAGGGCGCCACC ATGGCAAAGGAGGAGGCATGTGACGACTGGGAAAAGAGAGGCCAGCATAG CAGAAAGATGGGGCCACAACCGACGTGCATGAACTTGCGTGCGGTTGTGG AGGCACAGATCTTGCGGGCGGCGAGGAGTTTGACGCCTTCCGAGTAGGAG ACCATGGCCAGGGACGTGAGGAGGAGGGCGCGGGTATCGTGTGCATGGGG GTTGGCGAGGGTCTTGGCCGTGAAGAAGGACGAGGCGGTGGTGGGAGTGG GAGTGCTGGCGGCGGCGGGGGCCAGGGAGAAGGTCGGCATAATTAGAAGA GGTGATACAACTTATCTCTGTGTACAGGTGGGGACCGCATATGGGAGAGA TGAGGTGTGTGTCGGTCGAGACAACTCAACAAGCAATGGCAACGGCAATG CATTGAAGTCCATGTTTTTGAATTCTACATCAATGCAACGCCTCAATTTC TATGTTTTCCACGCCCATCATACCACTCCACGCTCACCCATGCGCACACC TGTACACTTCTCGCAGCAGCCACCTGCCCCAGTCGGATGATGGGGACATG GCTTGTCGTATCAGAATGGTGAACGTGTGAGCAAAGAGGCCCATTTCTCC TCATCACACTATACGCATCCCGCCGCACACGCTCGTCGTCCCGTCCTCCG CTTACCTGCGCCCTCGGCAGTCAAAAAACGAAAGAAACCAGCGACGACAT TAGATGATAGACTCCTTCGTCAGCCTTAGATCCACCGTTCGTCAGCGTTT CGCGAATTTAACAGAGCAGTATCCCACTGGCATGGTGCGTGCCAGAAGTG CGAGCAAGACGCTAGGGACCTGCTTGACTATCGTCATGGTAAGGGAGGGA GGGAAGGAAGAGGGAAGAGGAGAACGAGAGTACGGAAAAGAAGCGGATTT AGTGCTTGGAGACGAAGGAGGACTTGTCAATCATTTCCTTTTCGAACCAT CCCCTTCTGTCCCCTACCCTGCTGCTCCCATCTTGCTCTCAATTCGACTG ATGTCTTTCTGTGTAATCGTCAGTGTGTCTCCCCCTTCCTTTCCCCCTCT CTCTCCCCTACCTCCACCTCGACTCTCACAACCTCTTCACCCCCAGGCGG TCGTCTACATGTCCATGATCTATCTTGTCGTCGGTCGCGTATCCAGCCCC TCTCTCTCCCTCCTCAACGCCACCACAAGCACCAGCTACAGCACCAATCT CCGCGGCGCCTCCTCCTCCTCCTCCTCCCCCTCTCTCTCCAAATTTCGCA ACAACCCCCTCCCCTCCCTCCCCAATAGCGCCGCCCTCACCCACCTCATC GTCGTTGCCGGCCACGCCGTCACTATCACCGAATCCCTCGAGGGCGTGGA GGAGGAGGACCATGTGTGGTACCTCCTCCCCTACCAGAAGGCGCAGGACC TTCCCGCCACATTTGTGGCGCACATTAAAGCAGGCGTAAGCTTGGCCCAG AGAGACCCGGCTTCTCTGTTGGTCTTCTCGGGAGGGCAGACAAGGGTCGA TGCGGGCCCGTGGAGCGAGGGGGCTGCATACTACCGTGTGGCGGAGCATT TTGGGTGGTGGGATCCTGCGTCTGACCCCAGTCCAGAGGTGAAAGGCCGG GCGTTGGCGGAAGAGTACGCGCTCGACTCCTTCGAGAACCTTCTATACTC CATCTGCCGCTTCAAGGAGTACACAGGCCACTACCCTACCCGCATCACCG TCGTCTCCTTCGCGTTTAAGCGCGCCCGCTTCTTGTCACACCACCGGGGG GCTCTACGTTTCCCCGAGGCTCAATTCGAATATATGGGCCTTGATCCACC ACCAGAGGGACGCTTTGACCGCAAGAAGGCCGTGGAGGGGGAGTACCACG ATGCCTTAAAGCTGTTCGAATCCGACCCCTATGGCTGTCACTCCAAGACA CTTCAAGAGAAACGAGCAAGCCGCAACCCATTCCGTCGCACCGCGCCCTA CGCCCTCGCCTGCCCTGAGATCGCCCCCCTCCTTGAGTATTGCCAGCGTA CCATCTACCCTCATGCGCTCCCGTGGGACGCGCACTAGGCGGCGAGAAGG AGAAGATTAGCGTGAGGGAGGGGGAAAGGGATAGAGTATGAGTCTCTGCG AGGAAGAGTGAGCAAGCGGGAGAAAGACATGAAAGGGAGGGAGGGAGGGA GAGAGGGATGGCCTCGTGGAGGCCATAATGCTAGATCAGTGGCAAAACAA TTTAGAAGCTGTTTGCGTTCGTGTAACCGGAAGCATTGCTACGCGCTCCG AGCATAAGGAGGAGAGAGAAAGTGTGACTACTGCTTCAAGGCAGTGAGCG TCGACGCGTGAGGAGGGGCACAATTAAAGTCACTGATTGTACAGTAAACA CCTCCCCGGGCGATCTCCGAGAAGAAATAGAATGGAATGCAAAAATCGCA CTCCTCGTCTTTCGATCAAAACGTGTCGA back to topprotein sequence of NO13G00260.2 >NO13G00260.2-protein ID=NO13G00260.2-protein|Name=NO13G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp MIDSFVSLRSTVRQRFANLTEQYPTGMVRARSASKTLGTCLTIVMVREGG KEEGRGEREYGKEADLVLGDEGGLVNHFLFEPSPSVPYPAAPILLSIRLM SFCVIVSVSPPSFPPLSPLPPPRLSQPLHPQAVVYMSMIYLVVGRVSSPS LSLLNATTSTSYSTNLRGASSSSSSPSLSKFRNNPLPSLPNSAALTHLIV VAGHAVTITESLEGVEEEDHVWYLLPYQKAQDLPATFVAHIKAGVSLAQR DPASLLVFSGGQTRVDAGPWSEGAAYYRVAEHFGWWDPASDPSPEVKGRA LAEEYALDSFENLLYSICRFKEYTGHYPTRITVVSFAFKRARFLSHHRGA LRFPEAQFEYMGLDPPPEGRFDRKKAVEGEYHDALKLFESDPYGCHSKTL QEKRASRNPFRRTAPYALACPEIAPLLEYCQRTIYPHALPWDAH* back to topmRNA from alignment at chr13:96744..100674- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00260.2 ID=NO13G00260.2|Name=NO13G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=3931bp|location=Sequence derived from alignment at chr13:96744..100674- (Nannochloropsis oceanica) CCCCCCTCCCCCTCATAACCAGCCAATCCGCCAGCACGACCGCAACAAAC
ACTACCACATTATCCCACCCCTCCGGAACCGGTAATGTCTCCGCCGCCGC
ACTCAACAACGTGGCCCCCCACACCCTCTCCCCCACCCCCCTCCTCCCTC
TCTCTGCAACGGCGATCCACCCGTGGTATTGGAAATATGCCGCGAGGCAG
AAAGAGGTCAAGACACTGGCAGCGATGAAGCCCAGCGTGCCCACCCACGA
CTTGCTACGACACCAGGGAATCCGCCCTCTTTGTTGTGGTTGTTGTTGTT
GTTGTTGTGGTTGGTCGTGGTGGTGGTGTTGGAGTTGTGGCTCTGACTGC
CATGTGAGTTTTTTTCCGTCGTCGTCGTGTTTCACGTTTTGAATCGCCAA
AGGTGCACACCGACGACCAATCAAGTCCGCGAAGCCGTCGCCCGCACACA
GGCACGAAATACACAGGGCGGCAGTCAGGTGCCGCCAGTACACCAGCGTA
GCAACGATCATGACGCTTCCATACAAGAAAGGCCCGCGCAACAACTCCTG
CCGGGCGCCGGTCCTGCTCATGCTTTGCACGGTCGCCTGATTTTGTGCTA
TTCCCAGGCCGACAAGTGTGAAGAAAGACGTCAAGGCCAAGGGCGCCACC
ATGGCAAAGGAGGAGGCATGTGACGACTGGGAAAAGAGAGGCCAGCATAG
CAGAAAGATGGGGCCACAACCGACGTGCATGAACTTGCGTGCGGTTGTGG
AGGCACAGATCTTGCGGGCGGCGAGGAGTTTGACGCCTTCCGAGTAGGAG
ACCATGGCCAGGGACGTGAGGAGGAGGGCGCGGGTATCGTGTGCATGGGG
GTTGGCGAGGGTCTTGGCCGTGAAGAAGGACGAGGCGGTGGTGGGAGTGG
GAGTGCTGGCGGCGGCGGGGGCCAGGGAGAAGGTCGGCATAATTAGAAGA
GGTGATACAACTTATCTCTGTGTACAGGTGGGGACCGCATATGGGAGAGA
TGAGGTGTGTGTCGGTCGAGACAACTCAACAAGCAATGGCAACGGCAATG
CATTGAAGTCCATGTTTTTGAATTCTACATCAATGCAACGCCTCAATTTC
TATGTTTTCCACGCCCATCATACCACTCCACGCTCACCCATGCGCACACC
TGTACACTTCTCGCAGCAGCCACCTGCCCCAGTCGGATGATGGGGACATG
GCTTGTCGTATCAGAATGGTGAACGTGTGAGCAAAGAGGCCCATTTCTCC
TCATCACACTATACGCATCCCGCCGCACACGCTCGTCGTCCCGTCCTCCG
CTTACCTGCGCCCTCGGCAGTCAAAAAACGAAAGAAACCAGCGACGACAT
TAGATGATAGACTCCTTCGTCAGCCTTAGATCCACCGTTCGTCAGCGTTT
CGCGGTAAGTGAGGGGTCAACGGCGCGGGCTTCCTTCAGGGCATTGATCC
ACGCCTCCCCCTCTCCCTCGCTTATTCTCACCCAACCACCCACACATACA
GAATTTAACAGAGCAGTATCCCACTGGCATGGTGCGTGCCAGAAGTGCGA
GCAAGACGCTAGGGACCTGCTTGACTATCGTCATGGTAAGGGAGGGAGGG
AAGGAAGAGGGAAGAGGAGAACGAGAGTACGGAAAAGAAGCGGATTTAGT
GCTTGGAGACGAAGGAGGACTTGTCAATCATTTCCTTTTCGAACCATCCC
CTTCTGTCCCCTACCCTGCTGCTCCCATCTTGCTCTCAATTCGACTGATG
TCTTTCTGTGTAATCGTCAGTGTGTCTCCCCCTTCCTTTCCCCCTCTCTC
TCCCCTACCTCCACCTCGACTCTCACAACCTCTTCACCCCCAGGCGGTCG
TCTACATGTCCATGATCTATCTTGTCGTCGGTCGCGTATCCAGCCCCTCT
CTCTCCCTCCTCAACGCCACCACAAGCACCAGCTACAGCACCAATCTCCG
CGGCGCCTCCTCCTCCTCCTCCTCCCCCTCTCTCTCCAAATTTCGCAACA
ACCCCCTCCCCTCCCTCCCCAATAGCGCCGCCCTCACCCACCTCATCGTC
GTTGCCGGCCACGCCGTCACTATCACCGAATCCCTCGAGGGCGTGGAGGA
GGAGGACCATGTGTGGTACCTCCTCCCCTACCAGAAGGCGCAGGACCTTC
CCGCCACATTTGTGGCGCACATTAAAGCAGGCGTAAGCTTGGCCCAGAGA
GACCCGGCTTCTCTGTTGGTCTTCTCGGGAGGGCAGACAAGGGTCGATGC
GGGCCCGTGGAGCGAGGGGGCTGCATACTACCGTGTGGCGGAGCATTTTG
GGGTTCGTGGGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGTGAGGGAGG
GGTGGGAGGGGAAGGGGGAGGATGGGAGGGAGGAGGAAGGGAGATTGGAA
AGGGAAGGGGCCATATCAATTGCGTGTCAGCTGGTGCCTTCTGTCTGAGC
CGAGGCAGAGAAATCCTCCTTCTAACCCCAACGCCATCTCCCTCCCTCCC
TGCAGTGGTGGGATCCTGCGTCTGACCCCAGTCCAGAGGTGAAAGGCCGG
GCGTTGGCGGAAGAGTACGCGCTCGACTCCTTCGAGAACCTTCTATACTC
CATCTGCCGCTTCAAGGTAACCCAAGGCAGAAAAATGTGGCAGTCATCAG
TTCCCTCCGTCCCTCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCCTTCC
TCCCTTCTGGAGTACACAGATCATCAACCCCTCCCAATCATCGTCTTTTC
CTTCGCTTTTCACCTCATCCCTCCCTCCTTCCTTCCCTCCCTGCTTCGCC
GTCTCGGTGCAGGAGTACACAGGCCACTACCCTACCCGCATCACCGTCGT
CTCCTTCGCGTTTAAGCGCGCCCGCTTCTTGTCACACCACCGGGGGGCTC
TACGTTTCCCCGAGGCTCAATTCGAATATATGGGCCTTGATCCACCACCA
GAGGGACGCTTTGACCGCAAGAAGGCCGTGGAGGGGGTGGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAATGTCGGTGGGGGTCGTTCGCTCGC
TGTTTTTCAATTGTGTGGCCTGATTTGTTTTGATGTCGCTTTGTGTCTTT
TTTTTGCGTTTGCTCTTGGAGGTCTCCCTTCATTTGGTGGTGCCCTTGTC
TGTCATGCTCGCGAGTGTCCTCTATTTAATTCTTTCCTTTTGCCTTGCCT
TGCATGGAAGCCTCTTTCCTTTATTATTATTCATTCTCACCAGCCTTCTC
CCTCCCTCCCTCCCTCTTTTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCC
ACCCTACCTTCCTCCTTCTTTCCCTCCCGCCTCCTTCCTCAGGAGTACCA
CGATGCCTTAAAGCTGTTCGAATCCGACCCCTATGGCTGTCACTCCAAGA
CACTTCAAGAGAAACGAGCAAGCCGCAACCCATTCCGTCGCACCGCGCCC
TACGCCCTCGCCTGCCCTGAGATCGCCCCCCTCCTTGAGTATTGCCAGCG
TACCATCTACCCTCATGCGCTCCCGTGGGACGCGCACTAGGCGGCGAGAA
GGAGAAGATTAGCGTGAGGGAGGGGGAAAGGGATAGAGTATGAGTCTCTG
CGAGGAAGAGTGAGCAAGCGGGAGAAAGACATGAAAGGGAGGGAGGGAGG
GAGAGAGGGATGGCCTCGTGGAGGCCATAATGCTAGATCAGTGGCAAAAC
AATTTAGAAGCTGTTTGCGTTCGTGTAACCGGAAGCATTGCTACGCGCTC
CGAGCATAAGGAGGAGAGAGAAAGTGTGACTACTGCTTCAAGGCAGTGAG
CGTCGACGCGTGAGGAGGGGCACAATTAAAGTCACTGATTGTACAGTAAA
CACCTCCCCGGGCGATCTCCGAGAAGAAATAGAATGGAATGCAAAAATCG
CACTCCTCGTCTTTCGATCAAAACGTGTCGA back to topCoding sequence (CDS) from alignment at chr13:96744..100674- >NO13G00260.2 ID=NO13G00260.2|Name=NO13G00260.2|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr13:96744..100674- (Nannochloropsis oceanica) ATGATAGACTCCTTCGTCAGCCTTAGATCCACCGTTCGTCAGCGTTTCGC GAATTTAACAGAGCAGTATCCCACTGGCATGGTGCGTGCCAGAAGTGCGA GCAAGACGCTAGGGACCTGCTTGACTATCGTCATGGTAAGGGAGGGAGGG AAGGAAGAGGGAAGAGGAGAACGAGAGTACGGAAAAGAAGCGGATTTAGT GCTTGGAGACGAAGGAGGACTTGTCAATCATTTCCTTTTCGAACCATCCC CTTCTGTCCCCTACCCTGCTGCTCCCATCTTGCTCTCAATTCGACTGATG TCTTTCTGTGTAATCGTCAGTGTGTCTCCCCCTTCCTTTCCCCCTCTCTC TCCCCTACCTCCACCTCGACTCTCACAACCTCTTCACCCCCAGGCGGTCG TCTACATGTCCATGATCTATCTTGTCGTCGGTCGCGTATCCAGCCCCTCT CTCTCCCTCCTCAACGCCACCACAAGCACCAGCTACAGCACCAATCTCCG CGGCGCCTCCTCCTCCTCCTCCTCCCCCTCTCTCTCCAAATTTCGCAACA ACCCCCTCCCCTCCCTCCCCAATAGCGCCGCCCTCACCCACCTCATCGTC GTTGCCGGCCACGCCGTCACTATCACCGAATCCCTCGAGGGCGTGGAGGA GGAGGACCATGTGTGGTACCTCCTCCCCTACCAGAAGGCGCAGGACCTTC CCGCCACATTTGTGGCGCACATTAAAGCAGGCGTAAGCTTGGCCCAGAGA GACCCGGCTTCTCTGTTGGTCTTCTCGGGAGGGCAGACAAGGGTCGATGC GGGCCCGTGGAGCGAGGGGGCTGCATACTACCGTGTGGCGGAGCATTTTG GGTGGTGGGATCCTGCGTCTGACCCCAGTCCAGAGGTGAAAGGCCGGGCG TTGGCGGAAGAGTACGCGCTCGACTCCTTCGAGAACCTTCTATACTCCAT CTGCCGCTTCAAGGAGTACACAGGCCACTACCCTACCCGCATCACCGTCG TCTCCTTCGCGTTTAAGCGCGCCCGCTTCTTGTCACACCACCGGGGGGCT CTACGTTTCCCCGAGGCTCAATTCGAATATATGGGCCTTGATCCACCACC AGAGGGACGCTTTGACCGCAAGAAGGCCGTGGAGGGGGAGTACCACGATG CCTTAAAGCTGTTCGAATCCGACCCCTATGGCTGTCACTCCAAGACACTT CAAGAGAAACGAGCAAGCCGCAACCCATTCCGTCGCACCGCGCCCTACGC CCTCGCCTGCCCTGAGATCGCCCCCCTCCTTGAGTATTGCCAGCGTACCA TCTACCCTCATGCGCTCCCGTGGGACGCGCACTAG back to top
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