Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr12 genome chr12:1154813..1158202 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G04000.2 vs.
Match: EWM25635.1 (equilibrative nucleoside transporter 1 [Nannochloropsis gaditana])
HSP 1 Score: 497.7 bits (1280), Expect = 5.100e-137
Identity = 319/555 (57.48%), Postives = 383/555 (69.01%), Query Frame = 0
Query: 40 FSLTFMASNLLFQALLVRHAKAAAEHSLTRRIVLPLALLLALFAATAALVLVIDIPRNFLFAFTAICVALCGLCTSLLQAAIFGYAAVFPPRYTQAMMAGQGLAGLIVASAGLVTAVISRANDVCVSVRSEADVQSGGEEGEPEAVCAGYKQVDLSAFAYFGTAVLVLGVCIISFLFLERMPLAQYYTSKSKLLAADAEAGTAAAAAAGGLEGVERGQARATVASKSGTSSGTSSDSRSSSGDNTEDAGTPRSDEELGKGGKSGEDQTEEWEEEEEEEEEEEEEEEEEDSDDEGSIGTLVGILPALDPCAALPHLEPSSPLLRAE-EGEDGQVLEKSVIRQHKSNAPIFLLDSTTEACAHHSNRHHGHHPHQHVAFLDLLRLLGSPGVAVFLVFFVTLALFPSTTVHIVSVSRCESDSIFFNQAFVPFQFLLFNLGDWGGRTLAGHLPSRFLPPFHRLGLYAAARVMFFPLFLLCNVEGSAFPVVFAEDWWPTLFMIAFSFSNGYLSSLAMMTGPAQLPPALAERGGNVMVLLMTGGLSAGSLLSFVVSAISLGK 594
FSLTFMA+NLLFQ+LLVR+AK A + S+T RIVLPLALLL++FAATA LVLV D R+ +F+FTA+ VALCG CTS+LQAAIFGYAA FPPRYTQAMMAGQGLAGLIVA+AGL TA SRAN C V + G +GE A C+ Y+++D A AYFGTAV++LGVCI+SFL+LER+PLAQ++ +K + AA GG ++AT+ G SG+ +S ++ A P + G GG+ D+ E + E+ EE SD+E S+G LVG+LP DPCA L ++ S LL A E E G E+S + N + + S+ HQHV+FL LLR LGSPG+AVFLVF +TLALFPSTTVHIVSV RC+ +F++QAFVPFQFLLFNLGDWGGRTLAGHLPS FL P HRL YAAARV+F PLFLLCNV+ SAFP+VFA DWWP LFM+ FS SNGYLSSLAMM GPAQL AERGGNVMVLLMT GLSAGS+LSF+VSA+SL K
Sbjct: 24 FSLTFMATNLLFQSLLVRYAKTAGKCSITFRIVLPLALLLSIFAATAVLVLVKDASRDGMFSFTALSVALCGFCTSVLQAAIFGYAAAFPPRYTQAMMAGQGLAGLIVAAAGLATAASSRANGACAGVHL---TEEGPGQGEQMAACSAYQEIDYHALAYFGTAVVILGVCIVSFLYLERLPLAQFFVGYNK-----RHVHSPRGAAGGG--------SKATLGL-GGNRSGSGKGDDASVVESGLRA-LPMAVRS-GAGGEGAADK---------EAVGVDGEQGEEASDEESSVG-LVGVLPNTDPCALLSRVDSSLSLLSAHGEDERGDGNEES---ESWGNTTLHDIKSSVRT-------------HQHVSFLVLLRRLGSPGLAVFLVFSITLALFPSTTVHIVSVRRCQGRGVFYDQAFVPFQFLLFNLGDWGGRTLAGHLPSPFLVPAHRLSFYAAARVVFLPLFLLCNVDDSAFPIVFAADWWPMLFMLFFSLSNGYLSSLAMMRGPAQLTVDQAERGGNVMVLLMTAGLSAGSVLSFLVSAVSLNK 533
The following BLAST results are available for this feature:
BLAST of NO12G04000.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 Expect = 5.10e-137 / Id = 57.48 Sequence EWM25635.1
Match Name E-value Identity Description
EWM25635.1 5.100e-137 57.48 equilibrative nucleoside transporter 1 [Nannochlor... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO12G04000.2 ID=NO12G04000.2|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2856bp back to top protein sequence of NO12G04000.2
>NO12G04000.2-protein ID=NO12G04000.2-protein|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp back to top mRNA from alignment at chr12:1154813..1158202-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G04000.2 ID=NO12G04000.2|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=3390bp|location=Sequence derived from alignment at chr12:1154813..1158202- (Nannochloropsis oceanica)ATGTCTTCCCGTCCCG
TCCAATACTCCACACACACTTCGGCAGCATTTATCACCGCGGCTAGCTAC
TACGCTCAGCGCTTCTGTGGCACCGCTCGCCAACACGATTTTGAGAACT G
TACGTTTTATTCCTCCTCGTGTAATAATTACCAGGAAAAGTCAGGGAGCT
ACCCTATTGGTTGTGTCTCTCCGGCCATTTGGTTGGGGTATTGAGGTGTG
TTTTGCTTGTCCACCCCCCTTAATCTCCTCGTCGTGCTTGTCACCAATCT
TGAACCCCCCTTATCACTTCACAATCGTTCTTCCCCTCCTTCGCAACAAT
CCATTTCTCAGTCTTCTCCCTGACCTTTATGGCCAGCAATCTGCTCTTCC
AAGCCCTCCTCGTCCGCCACGCCAAGGCTGCTGCCGAGCACAGTCTCACC
CGCCGCATTGTCCTCCCCCTGGCCCTCCTCCTCGCCCTCTTTGCCGCCAC
CGCCGCCCTGGTCCTCGTCATAGACATCCCTCGCAATTTTCTCTTCGCTT
TTACTGCTATCTGCGTGGCGCTATGCGGGCTTTGCACGTCGCTCCTCCAG
GCGGCCATCTTCGGGTATGCCGCTGTCTTCCCGCCCAGGTACACCCAGGC
CATGATGGCGGGGCAGGGGCTCGCTGGCCTGATTGTGGCCTCAGCGGGCC
TAGTTACGGCGGTGATCAGTCGAGCAAACGACGTGTGCGTGAGCGTGCGG
TCGGAGGCGGACGTGCAGAGCGGGGGGGAGGAAGGAGAGCCGGAGGCGGT
GTGTGCGGGCTACAAGCAAGTGGACTTGAGCGCCTTCGCCTACTTCGGGA
CGGCCGTGCTGGTCCTGGGCGTGTGCATAATCTCATTTCTCTTCCTCGAG
AGAATGCCCCTAGCCCAATACTACACCAGCAAAAGCAAGCTCTTGGCTGC
AGATGCCGAGGCAGGAACAGCAGCAGCAGCAGCAGCGGGAGGGTTGGAAG
GGGTGGAAAGAGGGCAGGCAAGGGCCACAGTAGCGAGTAAAAGCGGTACT
AGCAGCGGTACCAGCAGTGACAGCAGGAGTAGCAGCGGAGATAACACCGA
GGATGCGGGCACCCCGCGCAGCGACGAGGAGCTAGGGAAGGGAGGGAAGT
CAGGAGAAGATCAAACGGAGGAGTGGGAGGAGGAGGAGGAGGAAGAGGAG
GAGGAAGAGGAGGAGGAAGAGGAGGAGGACAGCGACGATGAAGGTAGTAT
TGGAACACTCGTTGGTATCTTGCCGGCCCTGGATCCTTGCGCGGCCCTCC
CACACTTGGAGCCATCTTCTCCGCTGCTGAGGGCGGAGGAAGGGGAGGAT
GGGCAGGTACTCGAGAAGAGCGTCATCCGCCAGCATAAAAGCAATGCACC
GATTTTTCTGCTTGACTCTACCACTGAGGCTTGTGCGCATCATTCCAACC
GCCACCACGGCCATCACCCTCACCAGCACGTGGCTTTTCTGGACCTCCTT
CGGCTCCTGGGTTCGCCGGGCGTGGCCGTGTTCCTGGTCTTCTTTGTAAC
CCTGGCCCTCTTCCCCTCCACTACAGTACACATCGTCTCCGTCTCCCGAT
GCGAGAGTGACAGCATTTTCTTTAACCAGGCATTCGTTCCCTTCCAATTT
CTTCTTTTCAATCTGGGGGATTGGGGCGGCCGGACTCTAGCGGGTCACCT
GCCTTCGCGCTTCCTCCCCCCCTTCCATCGCCTGGGCTTGTACGCTGCTG
CCCGCGTGATGTTTTTTCCCCTTTTCCTCCTCTGCAATGTGGAAGGCTCG
GCGTTTCCGGTTGTCTTCGCCGAGGACTGGTGGCCCACCCTCTTCATGAT
TGCTTTCTCTTTCAGCAATGGTTACCTCTCTTCCTTGGCCATGATGACGG
GACCAGCGCAGTTGCCACCAGCTTTGGCGGAACGAGGGGGGAATGTGATG
GTGCTGCTGATGACGGGAGGATTGAGTGCTGGCTCGCTGTTGTCATTCGT
GGTCTCGGCGATTAGTCTGGGGAAGAAGATGTAG back to top Coding sequence (CDS) from alignment at chr12:1154813..1158202-
>NO12G04000.2 ID=NO12G04000.2|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at chr12:1154813..1158202- (Nannochloropsis oceanica) back to top