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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:1154813..1158202 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G04000.2 vs.
Match: EWM25635.1 (equilibrative nucleoside transporter 1 [Nannochloropsis gaditana]) HSP 1 Score: 497.7 bits (1280), Expect = 5.100e-137 Identity = 319/555 (57.48%), Postives = 383/555 (69.01%), Query Frame = 0
Query: 40 FSLTFMASNLLFQALLVRHAKAAAEHSLTRRIVLPLALLLALFAATAALVLVIDIPRNFLFAFTAICVALCGLCTSLLQAAIFGYAAVFPPRYTQAMMAGQGLAGLIVASAGLVTAVISRANDVCVSVRSEADVQSGGEEGEPEAVCAGYKQVDLSAFAYFGTAVLVLGVCIISFLFLERMPLAQYYTSKSKLLAADAEAGTAAAAAAGGLEGVERGQARATVASKSGTSSGTSSDSRSSSGDNTEDAGTPRSDEELGKGGKSGEDQTEEWEEEEEEEEEEEEEEEEEDSDDEGSIGTLVGILPALDPCAALPHLEPSSPLLRAE-EGEDGQVLEKSVIRQHKSNAPIFLLDSTTEACAHHSNRHHGHHPHQHVAFLDLLRLLGSPGVAVFLVFFVTLALFPSTTVHIVSVSRCESDSIFFNQAFVPFQFLLFNLGDWGGRTLAGHLPSRFLPPFHRLGLYAAARVMFFPLFLLCNVEGSAFPVVFAEDWWPTLFMIAFSFSNGYLSSLAMMTGPAQLPPALAERGGNVMVLLMTGGLSAGSLLSFVVSAISLGK 594
FSLTFMA+NLLFQ+LLVR+AK A + S+T RIVLPLALLL++FAATA LVLV D R+ +F+FTA+ VALCG CTS+LQAAIFGYAA FPPRYTQAMMAGQGLAGLIVA+AGL TA SRAN C V + G +GE A C+ Y+++D A AYFGTAV++LGVCI+SFL+LER+PLAQ++ +K + AA GG ++AT+ G SG+ +S ++ A P + G GG+ D+ E + E+ EE SD+E S+G LVG+LP DPCA L ++ S LL A E E G E+S + N + + S+ HQHV+FL LLR LGSPG+AVFLVF +TLALFPSTTVHIVSV RC+ +F++QAFVPFQFLLFNLGDWGGRTLAGHLPS FL P HRL YAAARV+F PLFLLCNV+ SAFP+VFA DWWP LFM+ FS SNGYLSSLAMM GPAQL AERGGNVMVLLMT GLSAGS+LSF+VSA+SL K
Sbjct: 24 FSLTFMATNLLFQSLLVRYAKTAGKCSITFRIVLPLALLLSIFAATAVLVLVKDASRDGMFSFTALSVALCGFCTSVLQAAIFGYAAAFPPRYTQAMMAGQGLAGLIVAAAGLATAASSRANGACAGVHL---TEEGPGQGEQMAACSAYQEIDYHALAYFGTAVVILGVCIVSFLYLERLPLAQFFVGYNK-----RHVHSPRGAAGGG--------SKATLGL-GGNRSGSGKGDDASVVESGLRA-LPMAVRS-GAGGEGAADK---------EAVGVDGEQGEEASDEESSVG-LVGVLPNTDPCALLSRVDSSLSLLSAHGEDERGDGNEES---ESWGNTTLHDIKSSVRT-------------HQHVSFLVLLRRLGSPGLAVFLVFSITLALFPSTTVHIVSVRRCQGRGVFYDQAFVPFQFLLFNLGDWGGRTLAGHLPSPFLVPAHRLSFYAAARVVFLPLFLLCNVDDSAFPIVFAADWWPMLFMLFFSLSNGYLSSLAMMRGPAQLTVDQAERGGNVMVLLMTAGLSAGSVLSFLVSAVSLNK 533
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G04000.2 ID=NO12G04000.2|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2856bp CTCTATCACTTTCACTGCACGCCGTCCACAACTTAGGCATTTCATCTTCC TCATAACAAATGACACTCGCTTTCCCCGGAAGCTCAATCTTTTGCGCACG ACAAATACAAGAATTTTGTCACAAGGCGAGCAAGGTGAAGGAATTCGCCG TCAAATCGTAATATTTTATTTACATGCACAGGGATTTCCCCCCACGTACA CAATATTCAAGGCATTCAGTACTACAGCTTTTCGAATCCACGCATTACGC ATTCATATTGGACGTAAGGATAACTCCATGGGAGTAGTCCTGCCGAGAGG CGAGTGGCTCCTCTTCACGCACCATCGATGCAGGTTTGTGGCGAGGTCCA TGACCCGGTCCCGCTCTCCCACCAGCACCTGATGTTTGTTGTCGGGTGTT AACTAGAGCTGGTTTTAAATATAGATCAAGGGACGCCACGTGTTGCTGTT CTCTAGCAGAGGTACCTACGCACCATTATTAGGGGGGATGATTGAGAGCA ATGTATGACAGTCGACAGTCGACACGTTGAGCTTGACATGGGAAAACATT TGAGGTGCCTCACTACCCTGCTTTTTCACGCCTTCTCGGCCACACCGACA CACCCCCGTACAGACGTAGGTAGCGGACACATTTCCCCCTACCTCCAGCC TCTTCATGCCGCGCCAATCGTCGTCCTCGCAATTGTGAGCTTCACCATCA TCCTATGAGACTATCTCTCTTGCAAACACCAAATTCCATGAAGGTCTCTC TCCTAGACGAGACGAGCACACACAGCATGATCCCTCCCGACAAATACAAT ATGGCCTATGCCATCTTCTACCTAAACGGCATTGCCCAGCTCTACCCTTG GAATGTCTCAAAATGTCTTCCCGTCCCGTCCAATACTCCACACACACTTC GGCAGCATTTATCACCGCGGCTAGCTACTACGCTCAGCGCTTCTGTGGCA CCGCTCGCCAACACGATTTTGAGAACTTCTTCTCCCTGACCTTTATGGCC AGCAATCTGCTCTTCCAAGCCCTCCTCGTCCGCCACGCCAAGGCTGCTGC CGAGCACAGTCTCACCCGCCGCATTGTCCTCCCCCTGGCCCTCCTCCTCG CCCTCTTTGCCGCCACCGCCGCCCTGGTCCTCGTCATAGACATCCCTCGC AATTTTCTCTTCGCTTTTACTGCTATCTGCGTGGCGCTATGCGGGCTTTG CACGTCGCTCCTCCAGGCGGCCATCTTCGGGTATGCCGCTGTCTTCCCGC CCAGGTACACCCAGGCCATGATGGCGGGGCAGGGGCTCGCTGGCCTGATT GTGGCCTCAGCGGGCCTAGTTACGGCGGTGATCAGTCGAGCAAACGACGT GTGCGTGAGCGTGCGGTCGGAGGCGGACGTGCAGAGCGGGGGGGAGGAAG GAGAGCCGGAGGCGGTGTGTGCGGGCTACAAGCAAGTGGACTTGAGCGCC TTCGCCTACTTCGGGACGGCCGTGCTGGTCCTGGGCGTGTGCATAATCTC ATTTCTCTTCCTCGAGAGAATGCCCCTAGCCCAATACTACACCAGCAAAA GCAAGCTCTTGGCTGCAGATGCCGAGGCAGGAACAGCAGCAGCAGCAGCA GCGGGAGGGTTGGAAGGGGTGGAAAGAGGGCAGGCAAGGGCCACAGTAGC GAGTAAAAGCGGTACTAGCAGCGGTACCAGCAGTGACAGCAGGAGTAGCA GCGGAGATAACACCGAGGATGCGGGCACCCCGCGCAGCGACGAGGAGCTA GGGAAGGGAGGGAAGTCAGGAGAAGATCAAACGGAGGAGTGGGAGGAGGA GGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGACAGCG ACGATGAAGGTAGTATTGGAACACTCGTTGGTATCTTGCCGGCCCTGGAT CCTTGCGCGGCCCTCCCACACTTGGAGCCATCTTCTCCGCTGCTGAGGGC GGAGGAAGGGGAGGATGGGCAGGTACTCGAGAAGAGCGTCATCCGCCAGC ATAAAAGCAATGCACCGATTTTTCTGCTTGACTCTACCACTGAGGCTTGT GCGCATCATTCCAACCGCCACCACGGCCATCACCCTCACCAGCACGTGGC TTTTCTGGACCTCCTTCGGCTCCTGGGTTCGCCGGGCGTGGCCGTGTTCC TGGTCTTCTTTGTAACCCTGGCCCTCTTCCCCTCCACTACAGTACACATC GTCTCCGTCTCCCGATGCGAGAGTGACAGCATTTTCTTTAACCAGGCATT CGTTCCCTTCCAATTTCTTCTTTTCAATCTGGGGGATTGGGGCGGCCGGA CTCTAGCGGGTCACCTGCCTTCGCGCTTCCTCCCCCCCTTCCATCGCCTG GGCTTGTACGCTGCTGCCCGCGTGATGTTTTTTCCCCTTTTCCTCCTCTG CAATGTGGAAGGCTCGGCGTTTCCGGTTGTCTTCGCCGAGGACTGGTGGC CCACCCTCTTCATGATTGCTTTCTCTTTCAGCAATGGTTACCTCTCTTCC TTGGCCATGATGACGGGACCAGCGCAGTTGCCACCAGCTTTGGCGGAACG AGGGGGGAATGTGATGGTGCTGCTGATGACGGGAGGATTGAGTGCTGGCT CGCTGTTGTCATTCGTGGTCTCGGCGATTAGTCTGGGGAAGAAGATGTAG GAAATGAGGGCTGGAGGGAATACGTAAGGACTCCGTGGGAGGGATGGGGG GGAGAAAACGGGGAGTGAGAATTAGAAGCTTGGTAATGCTGTGCATGGAG CGGGGGAAGTGTGTACATAGCATCTTTATGTGATAATTGTCCACTGAGTT TTGCGCATAGCGAATATGTAAAGACAAATCGAATAGCGGAAAAAGTGAAG CAGTTG back to topprotein sequence of NO12G04000.2 >NO12G04000.2-protein ID=NO12G04000.2-protein|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp MSSRPVQYSTHTSAAFITAASYYAQRFCGTARQHDFENFFSLTFMASNLL FQALLVRHAKAAAEHSLTRRIVLPLALLLALFAATAALVLVIDIPRNFLF AFTAICVALCGLCTSLLQAAIFGYAAVFPPRYTQAMMAGQGLAGLIVASA GLVTAVISRANDVCVSVRSEADVQSGGEEGEPEAVCAGYKQVDLSAFAYF GTAVLVLGVCIISFLFLERMPLAQYYTSKSKLLAADAEAGTAAAAAAGGL EGVERGQARATVASKSGTSSGTSSDSRSSSGDNTEDAGTPRSDEELGKGG KSGEDQTEEWEEEEEEEEEEEEEEEEEDSDDEGSIGTLVGILPALDPCAA LPHLEPSSPLLRAEEGEDGQVLEKSVIRQHKSNAPIFLLDSTTEACAHHS NRHHGHHPHQHVAFLDLLRLLGSPGVAVFLVFFVTLALFPSTTVHIVSVS RCESDSIFFNQAFVPFQFLLFNLGDWGGRTLAGHLPSRFLPPFHRLGLYA AARVMFFPLFLLCNVEGSAFPVVFAEDWWPTLFMIAFSFSNGYLSSLAMM TGPAQLPPALAERGGNVMVLLMTGGLSAGSLLSFVVSAISLGKKM* back to topmRNA from alignment at chr12:1154813..1158202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G04000.2 ID=NO12G04000.2|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=3390bp|location=Sequence derived from alignment at chr12:1154813..1158202- (Nannochloropsis oceanica) CTCTATCACTTTCACTGCACGCCGTCCACAACTTAGGCATTTCATCTTCC
TCATAACAAATGACACTCGCTTTCCCCGGAAGCTCAATCTTTTGCGCACG
ACAAATACAAGAATTTTGTCACAAGGCGAGCAAGGTGAAGGAATTCGCCG
TCAAATCGTAATATTTTATTTACATGCACAGGGATTTCCCCCCACGTACA
CAATATTCAAGGCATTCAGTACTACAGCTTTTCGAATCCACGCATTACGC
ATTCATATTGGACGTAAGGATAACTCCATGGGAGTAGTCCTGCCGAGAGG
CGAGTGGCTCCTCTTCACGCACCATCGATGCAGGTTTGTGGCGAGGTCCA
TGACCCGGTCCCGCTCTCCCACCAGCACCTGATGTTTGTTGTCGGGTGTT
AACTAGAGCTGGTTTTAAATATAGATCAAGGGACGCCACGTGTTGCTGTT
CTCTAGCAGAGGTACCTACGCACCATTATTAGGGGGGATGATTGAGAGCA
ATGTATGACAGTCGACAGTCGACACGTTGAGCTTGACATGGGAAAACATT
TGAGGTGCCTCACTACCCTGCTTTTTCACGCCTTCTCGGCCACACCGACA
CACCCCCGTACAGACGTAGGTAGCGGACACATTTCCCCCTACCTCCAGCC
TCTTCATGCCGCGCCAATCGTCGTCCTCGCAATTGTGAGCTTCACCATCA
TCCTATGAGACTATCTCTCTTGCAAACACCAAATTCCATGAAGGTCTCTC
TCCTAGACGAGACGAGCACACACAGCATGATCCCTCCCGACAAATACAAT
ATGGCCTATGGTACGTGCAGGCGGTGGTACCCGCGTGCATTTGGTGTATT
CCGAGGTGTGCGTATGGCACACTCCTTTTCAAACTGATCTTTCCCTGCTC
CCCGTTTTCGATTCGGTGCATGTGCTTTGATAGTACGCCGAGCACGATAT
CGGGGCTGTGTTTGCGTGCAGTCGGTAGACATGATCTCTGTTCCATGCCA
CAAATTATACTCATAGGCACACAATTTCTTACTCTGTCCCTTCCCGCCTA
CCTCACAGCCATCTTCTACCTAAACGGCATTGCCCAGCTCTACCCTTGGA
ATGGTAGGTGATCTTTCAGGGTGGTGATTATTCCTCTTATCGAAGCATCT
GCTCTACGTGTTTTGACTTTCTCGTAGTCTCAAAATGTCTTCCCGTCCCG
TCCAATACTCCACACACACTTCGGCAGCATTTATCACCGCGGCTAGCTAC
TACGCTCAGCGCTTCTGTGGCACCGCTCGCCAACACGATTTTGAGAACTG
TACGTTTTATTCCTCCTCGTGTAATAATTACCAGGAAAAGTCAGGGAGCT
ACCCTATTGGTTGTGTCTCTCCGGCCATTTGGTTGGGGTATTGAGGTGTG
TTTTGCTTGTCCACCCCCCTTAATCTCCTCGTCGTGCTTGTCACCAATCT
TGAACCCCCCTTATCACTTCACAATCGTTCTTCCCCTCCTTCGCAACAAT
CCATTTCTCAGTCTTCTCCCTGACCTTTATGGCCAGCAATCTGCTCTTCC
AAGCCCTCCTCGTCCGCCACGCCAAGGCTGCTGCCGAGCACAGTCTCACC
CGCCGCATTGTCCTCCCCCTGGCCCTCCTCCTCGCCCTCTTTGCCGCCAC
CGCCGCCCTGGTCCTCGTCATAGACATCCCTCGCAATTTTCTCTTCGCTT
TTACTGCTATCTGCGTGGCGCTATGCGGGCTTTGCACGTCGCTCCTCCAG
GCGGCCATCTTCGGGTATGCCGCTGTCTTCCCGCCCAGGTACACCCAGGC
CATGATGGCGGGGCAGGGGCTCGCTGGCCTGATTGTGGCCTCAGCGGGCC
TAGTTACGGCGGTGATCAGTCGAGCAAACGACGTGTGCGTGAGCGTGCGG
TCGGAGGCGGACGTGCAGAGCGGGGGGGAGGAAGGAGAGCCGGAGGCGGT
GTGTGCGGGCTACAAGCAAGTGGACTTGAGCGCCTTCGCCTACTTCGGGA
CGGCCGTGCTGGTCCTGGGCGTGTGCATAATCTCATTTCTCTTCCTCGAG
AGAATGCCCCTAGCCCAATACTACACCAGCAAAAGCAAGCTCTTGGCTGC
AGATGCCGAGGCAGGAACAGCAGCAGCAGCAGCAGCGGGAGGGTTGGAAG
GGGTGGAAAGAGGGCAGGCAAGGGCCACAGTAGCGAGTAAAAGCGGTACT
AGCAGCGGTACCAGCAGTGACAGCAGGAGTAGCAGCGGAGATAACACCGA
GGATGCGGGCACCCCGCGCAGCGACGAGGAGCTAGGGAAGGGAGGGAAGT
CAGGAGAAGATCAAACGGAGGAGTGGGAGGAGGAGGAGGAGGAAGAGGAG
GAGGAAGAGGAGGAGGAAGAGGAGGAGGACAGCGACGATGAAGGTAGTAT
TGGAACACTCGTTGGTATCTTGCCGGCCCTGGATCCTTGCGCGGCCCTCC
CACACTTGGAGCCATCTTCTCCGCTGCTGAGGGCGGAGGAAGGGGAGGAT
GGGCAGGTACTCGAGAAGAGCGTCATCCGCCAGCATAAAAGCAATGCACC
GATTTTTCTGCTTGACTCTACCACTGAGGCTTGTGCGCATCATTCCAACC
GCCACCACGGCCATCACCCTCACCAGCACGTGGCTTTTCTGGACCTCCTT
CGGCTCCTGGGTTCGCCGGGCGTGGCCGTGTTCCTGGTCTTCTTTGTAAC
CCTGGCCCTCTTCCCCTCCACTACAGTACACATCGTCTCCGTCTCCCGAT
GCGAGAGTGACAGCATTTTCTTTAACCAGGCATTCGTTCCCTTCCAATTT
CTTCTTTTCAATCTGGGGGATTGGGGCGGCCGGACTCTAGCGGGTCACCT
GCCTTCGCGCTTCCTCCCCCCCTTCCATCGCCTGGGCTTGTACGCTGCTG
CCCGCGTGATGTTTTTTCCCCTTTTCCTCCTCTGCAATGTGGAAGGCTCG
GCGTTTCCGGTTGTCTTCGCCGAGGACTGGTGGCCCACCCTCTTCATGAT
TGCTTTCTCTTTCAGCAATGGTTACCTCTCTTCCTTGGCCATGATGACGG
GACCAGCGCAGTTGCCACCAGCTTTGGCGGAACGAGGGGGGAATGTGATG
GTGCTGCTGATGACGGGAGGATTGAGTGCTGGCTCGCTGTTGTCATTCGT
GGTCTCGGCGATTAGTCTGGGGAAGAAGATGTAGGAAATGAGGGCTGGAG
GGAATACGTAAGGACTCCGTGGGAGGGATGGGGGGGAGAAAACGGGGAGT
GAGAATTAGAAGCTTGGTAATGCTGTGCATGGAGCGGGGGAAGTGTGTAC
ATAGCATCTTTATGTGATAATTGTCCACTGAGTTTTGCGCATAGCGAATA
TGTAAAGACAAATCGAATAGCGGAAAAAGTGAAGCAGTTG back to topCoding sequence (CDS) from alignment at chr12:1154813..1158202- >NO12G04000.2 ID=NO12G04000.2|Name=NO12G04000.2|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at chr12:1154813..1158202- (Nannochloropsis oceanica) ATGTCTTCCCGTCCCGTCCAATACTCCACACACACTTCGGCAGCATTTAT CACCGCGGCTAGCTACTACGCTCAGCGCTTCTGTGGCACCGCTCGCCAAC ACGATTTTGAGAACTTCTTCTCCCTGACCTTTATGGCCAGCAATCTGCTC TTCCAAGCCCTCCTCGTCCGCCACGCCAAGGCTGCTGCCGAGCACAGTCT CACCCGCCGCATTGTCCTCCCCCTGGCCCTCCTCCTCGCCCTCTTTGCCG CCACCGCCGCCCTGGTCCTCGTCATAGACATCCCTCGCAATTTTCTCTTC GCTTTTACTGCTATCTGCGTGGCGCTATGCGGGCTTTGCACGTCGCTCCT CCAGGCGGCCATCTTCGGGTATGCCGCTGTCTTCCCGCCCAGGTACACCC AGGCCATGATGGCGGGGCAGGGGCTCGCTGGCCTGATTGTGGCCTCAGCG GGCCTAGTTACGGCGGTGATCAGTCGAGCAAACGACGTGTGCGTGAGCGT GCGGTCGGAGGCGGACGTGCAGAGCGGGGGGGAGGAAGGAGAGCCGGAGG CGGTGTGTGCGGGCTACAAGCAAGTGGACTTGAGCGCCTTCGCCTACTTC GGGACGGCCGTGCTGGTCCTGGGCGTGTGCATAATCTCATTTCTCTTCCT CGAGAGAATGCCCCTAGCCCAATACTACACCAGCAAAAGCAAGCTCTTGG CTGCAGATGCCGAGGCAGGAACAGCAGCAGCAGCAGCAGCGGGAGGGTTG GAAGGGGTGGAAAGAGGGCAGGCAAGGGCCACAGTAGCGAGTAAAAGCGG TACTAGCAGCGGTACCAGCAGTGACAGCAGGAGTAGCAGCGGAGATAACA CCGAGGATGCGGGCACCCCGCGCAGCGACGAGGAGCTAGGGAAGGGAGGG AAGTCAGGAGAAGATCAAACGGAGGAGTGGGAGGAGGAGGAGGAGGAAGA GGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGACAGCGACGATGAAGGTA GTATTGGAACACTCGTTGGTATCTTGCCGGCCCTGGATCCTTGCGCGGCC CTCCCACACTTGGAGCCATCTTCTCCGCTGCTGAGGGCGGAGGAAGGGGA GGATGGGCAGGTACTCGAGAAGAGCGTCATCCGCCAGCATAAAAGCAATG CACCGATTTTTCTGCTTGACTCTACCACTGAGGCTTGTGCGCATCATTCC AACCGCCACCACGGCCATCACCCTCACCAGCACGTGGCTTTTCTGGACCT CCTTCGGCTCCTGGGTTCGCCGGGCGTGGCCGTGTTCCTGGTCTTCTTTG TAACCCTGGCCCTCTTCCCCTCCACTACAGTACACATCGTCTCCGTCTCC CGATGCGAGAGTGACAGCATTTTCTTTAACCAGGCATTCGTTCCCTTCCA ATTTCTTCTTTTCAATCTGGGGGATTGGGGCGGCCGGACTCTAGCGGGTC ACCTGCCTTCGCGCTTCCTCCCCCCCTTCCATCGCCTGGGCTTGTACGCT GCTGCCCGCGTGATGTTTTTTCCCCTTTTCCTCCTCTGCAATGTGGAAGG CTCGGCGTTTCCGGTTGTCTTCGCCGAGGACTGGTGGCCCACCCTCTTCA TGATTGCTTTCTCTTTCAGCAATGGTTACCTCTCTTCCTTGGCCATGATG ACGGGACCAGCGCAGTTGCCACCAGCTTTGGCGGAACGAGGGGGGAATGT GATGGTGCTGCTGATGACGGGAGGATTGAGTGCTGGCTCGCTGTTGTCAT TCGTGGTCTCGGCGATTAGTCTGGGGAAGAAGATGTAG back to top
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