Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr12 genome chr12:1026746..1033850 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03720.1 vs.
Match: GAX99123.1 (Hypothetical protein PINS_006976 [Pythium insidiosum])
HSP 1 Score: 88.6 bits (218), Expect = 1.500e-13
Identity = 125/480 (26.04%), Postives = 203/480 (42.29%), Query Frame = 0
Query: 252 PPRTLPAVPPSVRAVFS---------LDAGWLSLLTLRYLVAQIWALHTVRLACTLIILGIVLEAV--RYWRRSVPLLLLVGSVSYLRTMKVTRLAAASDPAGSGGRGPLYLRSRAMALVDRSLKDKNRVKVIVMGLQV-LPALSEAYGTI--VLFIRVHQHASLPLLVLAYLTLALLLLFLSSPPLT--GHTPYPLVRMRVAKLGLQFLCLAFLVGAGENREFFRLVGPALIAIGSSIFLTLSPTDMDGAVRAALTLMLQDVCLYTRHLITDDELLQLATTRWLVEYWSQPTDFSWEDYLPMLQHTLLTLREEMVEAVQPAITSLLKRLEEM--NIDTEAVRMVEAAKARVERIAPSKSFTAFLLYYRSTRHVAAFVIIMLVTYLLPVVGIRIIGVSSRPVVPWALLPLVFQDLYMLYTYLPRLLVLAQADSTDADGLSLLLQGTSLLGVWENLRYSVRALEGGLHVVRVYQTSVKALS 714
PP T A P + VF LD L+ L Y++ + L V L L+ LG++ +AV R+ + ++L+ + S LR M G Y+R + DK R V V + V LP + +G + +LF+R + V+ L +A L+ S+ ++ GH R+ + L + V G + RL PAL+ G + +++P ++ + AL+ +LQ+V R D L L T W ++YW QPTDFS E + M+ L +L++ + SL +++ E D E +V K + I P+K F L+ ++ +FV+ ML+ + G P++P+ L +D LY + DGL +LL + LL VWENL+ +V L+GG+ V + T LS
Sbjct: 120 PPSTSVAAPVASALVFEEKVDHLLRHLDLSKLARLAALYVLQDLAQLQHVSLGLLLLALGLLAQAVVHRHKFMAACIVLVCLNRSRLRDM-----------------GERYVRRWV-----ETSTDKLRAVVWVPRVVVALPVAMKVFGHLKFILFLRTDPWLWGIVSVVTALVVAGSLVMSSNETMSRWGHGK------RLKFVAYSTTVLYWAVWRGNYADSLRLAAPALLDGGGIMLSSVTPNEIRAVCQRALSRLLQEVVADVRQDDQFDALFVLGLTNWAIDYWQQPTDFSIEMVVGMVSEGLTSLQQTAKHVFGRELESLSRQMRERLGRSDDELALLVAYFKRSLNAIPPAKPLALFGLF---SKRCPSFVVAMLL--------VVFFGALPLPLLPF--LASETKDAMTLYD------LFTSGAFEPMDGLDILLLSSPLLRVWENLKTAVHCLQGGVTVSKAVSTCTHILS 552
The following BLAST results are available for this feature:
BLAST of NO12G03720.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 1.50e-13 / Id = 26.04 Sequence GAX99123.1
Match Name E-value Identity Description
GAX99123.1 1.500e-13 26.04 Hypothetical protein PINS_006976 [Pythium insidios... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO12G03720.1 ID=NO12G03720.1|Name=NO12G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=3645bp back to top protein sequence of NO12G03720.1
>NO12G03720.1-protein ID=NO12G03720.1-protein|Name=NO12G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1215bp back to top mRNA from alignment at chr12:1026746..1033850-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03720.1 ID=NO12G03720.1|Name=NO12G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=7105bp|location=Sequence derived from alignment at chr12:1026746..1033850- (Nannochloropsis oceanica)ATGGCGGCCGCCGTAACTAACGGCACGACGGCCGCTGCGCCAAAGAAGGA
GTGCTGGACTTGTGGGGGAAACCACGAGGAAGAAGATTGCCCGCACCGTG
TCTACATTGACCGGAGCAAAACACGAGTCGGTCAAG GTAAGTCCTATACC
TGTGTAGTTGTGTCAACACCCCCGGGCATTCAGACCCTTCATCCATCGAA
TTTACCAATCTTACCCATTCCATAACCTTCAAATAATACAAGATAAGACA
GGCGAGCTTGCTCTCGTCCGAGACGCGTCGAATGTGACCGGCATTTTCTC
AATCGCACGCTCCTCGACCGTTCCTTCCTGTGCTGTGCCTTCTCCGACAA
GCCCCCACCAGCCCGCTTGGAAACCCTCTTCCCACAACGCCTCGCCATCC
CAAAACCACTCCCGCGCATCTTCAATGCCCCAGTACACCACTATCCGGGC
AACCGTAGCAGCAGCAGCCGCAGCAGCAACAGCGGCGGCAAAGATAGCAA
AGGCAGCAAAAGGAGGAGCTCAAGTAGAGGACGAGGGACCTGTTGCCTCT
GCTCCTCCCCCTGTCAGGAGAAGACCCCCCACTATGGCCGGTCGTCGTGC
TTCTTTTTGCGTCCTCGACGAAAGCGTAGAGCAGCAGTTACCTCCCAGGC
ACGGACACAAGCAGTGTGCCTCCACCTCCTCCTTCTTCCCTCCCCCTCCC
CCTCTGTCGGGTAGCCCCCAAGCGTTATCCCACTTGGCCAGCTTTAGGGG
CACGGCTTCGCATGTGATACGCGCGGAGGGAGAACCGGCACCCATGTCCT
TCTCTGCCTTAGCGATGCAG GTATATGTGCATACGTATATTTTACGTATA
TTTAGACTTATGTATAAATACGCGGGAGGAAGGGAGGGAGGGAGTGGGAA
GGTCCGGGGGGGGATGGATGAAAGAGTGAGTGAGTGCTCGCTTGCTGCAT
AGGCTCTGCCCCCGTGATCCCGCTCACTGCTGCTTTGCCCTTGTGATCCC
GCTCACTGCTTCATTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCT
TCCCTCCCTCCCTCCCTCCGACTCCCAGCAATCCACCGTCCCAGGGCAGC
AACTCTCCTCCTGGGGCCCTCCCCGCACCCTCCCTGCGGTTCCTCCCTCC
GTGCGTGCAGTCTTCTCTCTCGACGCGGGCTGGCTGTCATTGCTAACGCT
GCGATACCTTGTCG GTAGGGAAAGCGAGGGTGAATGCGGAGGAGAGAGAG
ACAGAGGGAGAGAGAGAAAGAAAGACAGAGGGAGAGAGAGAAAGAAAGAA
AGACAGAGAGAGATAGAGAAAGAAAGAAAGACAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAA
AAGCGAGTGGCGTAAATGATGACGAAGAGTACTCGCACATCGTTTCCCCT
CCCTTCCTCCCTCCCTCCCTCACTACATTCCTTCCTTTCTTCCTCCCTCC
CTCCCCTTTTGTCAGCGCAAATATGGGCCCTCCACACGGTCCGACTCGCC
TGCACGCTCATCATCCTCGGGATAGTGCTGGAGGCGGTGCGGTACTGGCG
TCGATCCGTGCCACTGCTACTGCTCGTGGGGTCCGTGTCGTACCTGCGGA
CTATG GTGAGGAGGGAAGGAGGGAGGGAGGGAGGGCGGTACTGGCGTCGA
TGGATGCCGCTGTTGCCGCTGGTGGGCAAGGAGGCGGGAGGGTGGGGAGG
GAGGGAGGGAGGGAAGCATGGCAATGACCTACATTCAAACCATTGATTAC
TTACCCTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCTCCCTTCC
CCCCCATGTCCTTCAGAAAGTAACTCGGCTGGCAGCAGCGAGTGATCCAG
CCGGGTCAGGAGGCCGGGGTCCGCTGTATTTGCGCTCACGGGCCATGGCA
CTTGTCGACCGGAGTCTGAAG GTAACGAGGGAGGAAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAAGAGAGTGATGGACGGTTGCTCTGTTGACCTCTTTT
TTTCGGGACGCACTCCTCTACTGACTCCTTCTCCCTCCCTCTCTCCTTCC
CTCCCTCCCTCCCTCCCTCCTTTTCCCTCCCTCCCATCCTTTTTCGTTCC
TTCCTCCCTCTCTTGTATGACAGGACAAGAACCGAGTGAAGGTCATAGTT
ATGGGTCTGCAGGTCCTGCCGGCATTAAGCGAGGCATATGGAACGATCGT
TCTCTTCATACGCGTGCACCAG GTCGGTAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGTGCCAGCTAGCGTGTGCTATTGCCAGCAGAGA
CTCCTTTCACGACATGGCCATCTCCAACCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTCACAGCACGCGTCGCTGCCGCTC
CTCGTCCTCGCCTACCTCACTCTCGCCCTCCTCCTCCTCTTCCTCTCCTC
CCCCCCCTTGACGGGCCATACGCCCTACCCGCTCGTGCGCATGCGGGTGG
CGAAGCTGGGGTTGCAGTTTCTGTGTTTGGCCTTCCTCGTGGGCGCAGG G
TAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGG
CCGTGACAGTGATGGGATGTGTTTGTTATTGATGCACCCTCCATGTTATC
CTGCCCTCCTGTTTCCCTGCCTCCTTCCTTCCTATCCCCTCTTGCGTTCC
AACAGGGAGAACCGAGAATTCTTCCGCCTCGTGGGCCCTGCGCTCATTGC
CATTGGTA GTAAGTGCCCTCCCTCCCTCCCCCCCTCCCTTCTTCCCTTTA
TCCGCTCCTCGCGTCTCTCTCCCTCCCTCCCTCCCTTCCTCCCGACCTCC
TTCCATCGCTTGTTCCTCAACACCGCCCCTTCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTTCCCTTCATCCTCTCCTTACGTCTCTCTCCTTC
CCTCCCTCCCTTCTGTCAGGTTCCATCTTTCTCACTCTCTCCCCGACGGA
CATGGATGGCGCAGTCCGTGCGGCCTTAACCCTCATGCTCCAAGACGTCT
GCCTCTACACCCGCCATCTCATCACGGAT GTAAGTACGGAGGGAGCCCAG
CCTGGAGAGCGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAGGAAGTCA
ATTGTGGGATCAATGGCAGGAGGGACGGAGGGACGGAGGGAAGGAAGGAG
GGGATGAACACTCACACACTCACACTTCCTCCCTCCCTCCCTCCCTCCCG
CCACTGACCTCCCTCCCTCCTCCCTCCCTTTTCCCCTGCCTGAGAATGGG
CTCCTCCAGCTTACCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCTCCTCAGGAT
GAACTCCTGCAGCTGGCGACCACTCGCTGGCTCGTCGAGTATTGGAGCCA
GCCCACGGACTTCAGTTGGGAGGACTATCTGCCTATGCTCCAG GTAGACC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGGTTCAAAAGCCGG
CCCTCCCCTCATTCCCTCTCTTTCTTGCTCTTTTCCGTGTTTCAGAAGCC
GATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCGTCAGCACACGCTC
CTCACCCTGCGCGAGGAGATGGTGGAGGCCGTACAGCCCGCCATCACGTC
CCTCCTCAAACGACTGGAGGAGATGAACATCGACACAGAGGCC GTACGTG
CCCCTCCACTCTCTCTCCCTTCCCTCCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCGTGTTGACCTGTCCTCCGTGTCCCTTTCCCCTTTCCTCCAT
CACATTGACCTCCCTCCCTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTAGGTTCGAATGGTGGAGGCGGCCAAGGCC
CGGGTGGAGCGCATCGCCCCCTCCAAATCCTTCACGGCCTTCCTCCTCTA
CTACCGGAGCACGCGCCACGTGGCGGCCTTTGTCATCATCATGCTCGTGA
CGTACCTGCTGCCAGTGGTGGGGATTCG GTGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGAAGGGATGGAGAGAGGACCCAACCGCCCGCTCCCAATCA
CATTCGAAATCGCAACTGTTCATGCCCATCCATCCCTCCCTCCTCCCCTC
CCTCCCTCCCTCCTTCCCTCCCTCCCTTTCACCCTCCCACAGCATCATCG
GCGTCTCCTCCCGGCCGGTGGTGCCCTGGGCCCTCCTCCCTCTCGTTTTT
CAAGATTTGTACATGCTCTACACCTACCTTCCCAG GTAAGGACGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGA
GACGAGAAATGAGCTATGTAAAGACATGAACACCACCCTGATTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTGTGGTCAGGCTCCTTGTCCTGGC
CCAGGCCGACAGCACAGACGCGGATGGGCTCTCCCTCCTCCTTCAAGGCA
CCTCCCTCTTGGGCGTGTGGGAGAACTTACGGTACTCGGTCAGGGCGCTT
GAAGGGGGGCTGCACGTCGTGCGGGTATATCAGACATCGGTCAAG GTGAG
GAGGGAGGGAGGGAGGGAGGGAATGAAGAAAGAATCTCTTCCCCTCTTAA
TCGCAGGCATCTCGCTTGCCACAATTGTCTCAACAATCAACCCGTCCCTC
CCTCCCCAGGCCCTCTCCTTCATCCACACCATGAGGCTCTTCCATGCCCG
AGCCCACGCTCAATATGGCGCCCTCCTCTCGCAGCAACAGCTGCGACAGG
CGCAATCCAAAGCAGCGGAGGAGGAAGGGCAGGAGGGCGGAGGCACCGCC
GCTCCCACTACGACCACTGCTGCTGCGGCGGCGACGGCGGCGGCGGTGGC
AGAGAGGAAGAGGAGGGGGACTGAGGAGGCAGTGGCTTCCCTAACGGACG
CCTGGTCGTTCGCAGGGGGATGGGCCATGATGGAGCTCCTCCGGATCAAG
GCCTCGCCG GTACCTCCCTCCCTCCCTTCCCTCCTCTCGGGGTTTTCCCC
TCCCATCGTCCCCCCCTTCCCTCTTCTTTTTGAATCCTCCCCTTCCATCC
CTCCCTCTCCCTCCTCTCCCCGATGCTGCTGTCATCGCCCGCAGAGTGAT
GAGGTCGCACGGACGTCAATCGCCTCACCCTCCCTCCGTCGATTCCTCCC
TCCTTCCCTTTTCAGAACGCGGAGGTGGCCTCGGCGGCGGGGGATGCTGC
CGTCATTTATCGCAACGCGATGGCCCTGTACGGAGAGTGGCTGGTACATG
CCCCTGGGCTGTTCAACCAG GTAGGTAGGTAGGTAGGGAAGGAGGGAGGG
ACGGAGGGAGGGACGGAGGGAGGGAGGGGGGAGGGACGGACGGGAAGAGA
AGAGCATCACTGTCACTAACTGGTTCATTTTCTATCATTCCCCCTTCCAT
CTTTTCCCCCCTCCCTCCTTCCCTCCCTCCGCAGTGGCTGCACTCCTTCA
TGTTTACGTCAACCCGCAACACCCTCGGCCTGGGCCCGATCCGCCATCAT
CACCACCACCATCACCTCCCCCCTCCTCTCTCCTCTTCCAATCCCCCCTC
CCTCCCTGCCTCCTCCTCTTCCCGCCGGGGCTTCGCCTTCTCCTACTCCC
CCTCTCCTTCTGCCCCGTCCTCCCCCTCCTCCTCCTCCCCTTCCTCCCCT
ACCACTCAAAACGACCGACGCGGCCTGCACTTTCCTTTTTCTCACACGCA
GGGGAACAACTC GTATGGACAGGGAGGGAGGGAGGGAGGGAGGGGGGGAA
GGAGGGAGGGGTGTGAGCCTACGATTGACATTGTACCTGAAGCTCACATA
ATTATACACGCTCCTCGTCTCTCCTTCCCTCCCTCCCTCCCTCCTTCCCT
CCCTCAGGTACTGGGCAGATATGGATGGCATGTCTTACAGTCCCCCCCGC
GCCGAGCGTGAAGACAGCCTGGACGAGCTCCTGCATCGCACAGCCTCCCT
CCCCCCCTCCCTCGATGCTCCCATTGGGGAAATCGCAGAGGAGGAGGAGG
GGGAGGAGGTAGGGTGGGAAGGACTGGAGGGGGAGCAGCTGCTGCAGCAG
CAGCTGCATGGTGTGCTGGAACGTAGAGCTTCGAGAGGAG GTGCGTGATG
ATAGTAGCCCTCCCCCCCTCCCTCCCTTCCCCCCATTGCGACGCACGAAC
GCGGTCAGTCCCGCCCACCGCCCTTCTCACCCACCCCTCCCTCCTTCCCT
CCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCCTCAGACATCCTCCT
CAGAACGGGGCAAGGAAGGAGGAGGACCCGAACCTCCTCCCTCCCCTTAA
GCAACGCCGAGGACGAAGGCGAGGCATCCGTCTGGGAAAGATCGAGCGTC
TACTCCCACCCCTCCCTTCCCTCGCCCCCTCCCTCTCCCCCTTCCTCCAA
CCGCGATCGGGACAAGATCGAGATCACGAGCGTCATGGGATTGTTCGCCG
AGTCCGGACCCACCCAAATCCATGTCCTCCCCTCCAAATCCCACCCTTCC
CTACCTCCCTCCCTCCCTCCCCCCCTTCCTGCCACGGGCGTGGTCAAAAC
AACCGACCCGGAGGAGGAGGCCTTGCTACTGGGCTCTCTGTCCCCTCCCT
TCTGCCCTCCCTCCTCCCCCTCGCCCTCCAACGGTTCCTCTTCCTCGTCG
TCCTCATTGAAACAGAGATTAAAGGGATGGGTGTCGGTGGCCGGCGCCGG
CGCACTAGCGGCCTCGACGG GTGTGTTTACGTTTAGGAAAGGGAAGACCA
GGGGAAAGAGCGCTTATGATGAGGGGGGGAGGAGGAGGAAGGGGAGGGGC
AGGAGGAGGAGTAAGAGAAGGAATGGAGGGGGTAAGGAAGTGAAATGGAG
GGAAATGAGAGAAAGGAAGAGCAGGAAGAGGATGAGGACGAGGAGGAGGA
GGAGGAGGAGAAGGAAGAGGAGGAGAGGGAGGAGAGGCCAGGGGGATGGC
AGTGA back to top Coding sequence (CDS) from alignment at chr12:1026746..1033850-
>NO12G03720.1 ID=NO12G03720.1|Name=NO12G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=3645bp|location=Sequence derived from alignment at chr12:1026746..1033850- (Nannochloropsis oceanica) back to top