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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr12 | genome | chr12:980138..983154 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03590.1 vs.
Match: EWM25684.1 (ribonucleases p mrp protein subunit pop1 [Nannochloropsis gaditana]) HSP 1 Score: 229.2 bits (583), Expect = 4.800e-56 Identity = 128/282 (45.39%), Postives = 176/282 (62.41%), Query Frame = 0
Query: 113 KRLETHLWHSKRYPRMNDIWNHRLAYSATRRPSKAPLRAAQKRCVIHDASYVQVLEIKGRIKEGIIKLASLFLDPADVELLEEGARERGERMGDFLMYGCRAFPREALGPARFLWRPVGREGGREEEMEEWRRLWVWLHPSFAAQVLEEIQEEVGREGGREGG-----EVEVGLAPDSLLFELRGPLSRALLQEVLIPCATTAIAGAAATGTISRDDVTGGGEVKQEEEEEETDKEGRK--RGQDWWAQLPPRLPHGTVLSLLVADPRERRGGGVRGGQQQQ 388
+RLETH+WHSKRYPRM D W +RLAY+ +R+PSKAPLRA ++C +HDASY++VLE++ ++ I+ + + F+DP+D L + G +MG+ ++Y AFP LGP R+LWRP GR G E W +W+W HP+FA ++ EE++E G EGGREGG +++ L PD L FE+RGPLSR + + + C A + GG EEEE KE RK +G++W LP RL HG+VL L V DPRERRGG GG+Q++
Sbjct: 40 RRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSE---WH-VWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSR---RSIEMACRPVFPFNAGTRNGL-------GG-----EEEEVAVKEARKEEKGEEW---LPERLEHGSVLCLSVIDPRERRGGREGGGEQER 299
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03590.1 ID=NO12G03590.1|Name=NO12G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp AGATAGGGAGACAGCCTTTCGGGTACTGGGCTTAACCATTAATTAACGAT GGCCCTCCAAGTCCTGGCGTTTGCCGAGAGCCGGCGACGAGAGCTGCTGG CCCTTCTTCGCAAGCGGAAGGCACTGGCCGAAACGTACTATCGGAAAGGG CGCGCCAAGGCAAAAGACGGAGGCGGCAAGGCCAGCCTCTTGCTACCCGT CCTTGTGGCCCAGCGGCGGCGTTTACGACGGCGGACCACTTCACATAACC GCCGACACCCGCGGGCACACAAAAAGGCGAAAAAAGAGAAGGCCGGGGAG TCCATCGACACCCTCCTCTTGTCCCGTGCCAAGCGCCGGAAGCTAGAGCG CAATGGCATGGCCGATCCCATCCCAGGCCGCGCCAAGCGCCTGGAGACGC ACCTATGGCACAGCAAGCGCTACCCGCGCATGAATGATATATGGAACCAT CGTCTTGCCTATTCGGCGACCCGCCGACCTAGCAAGGCCCCTTTGAGGGC AGCACAGAAGCGGTGCGTGATTCACGATGCCTCTTATGTACAGGTCCTGG AGATAAAGGGTAGAATCAAAGAGGGTATTATCAAGCTAGCCTCTTTATTC TTGGACCCAGCGGACGTTGAGTTATTAGAGGAGGGAGCGAGGGAGCGAGG GGAGAGGATGGGGGACTTCTTAATGTACGGCTGCCGAGCCTTTCCAAGAG AGGCATTGGGGCCCGCTCGATTCCTGTGGCGGCCGGTGGGAAGAGAGGGA GGGAGGGAGGAAGAGATGGAGGAATGGCGACGGTTGTGGGTATGGCTGCA CCCTTCGTTTGCCGCGCAGGTGTTGGAAGAAATTCAGGAGGAGGTGGGGA GGGAGGGAGGGAGGGAGGGAGGGGAGGTGGAAGTCGGACTAGCGCCTGAT TCACTCTTGTTTGAGTTGAGGGGACCTTTGTCTAGGGCGTTGCTCCAGGA AGTGTTGATTCCTTGCGCTACTACTGCTATTGCAGGTGCTGCTGCGACTG GTACTATTTCTCGTGATGATGTGACTGGCGGGGGGGAGGTGAAGCAGGAA GAAGAGGAGGAGGAGACAGACAAGGAAGGGAGGAAGAGAGGGCAGGATTG GTGGGCACAGCTGCCACCTCGTCTTCCGCATGGGACTGTGCTGTCCTTGC TAGTGGCAGATCCCCGAGAAAGACGAGGAGGAGGAGTAAGAGGAGGGCAG CAGCAGCAGCAGCAAGAGCTGGAGCAGCGGCAAGGGCAGCAAGTGCCACA ACTGCACCTCCCTCCCTCCCTCCTTTGGGACGCTGCGGCACATGCACGAG TAACCGAGCACGCGGGCGCTCGTCCCGATCATGTGGTGAACGCGGAAAAG CAGGCAAGGAGGGAGGCAGAGGGAACATGGCAAGGCCTTTTACGCGGTGC CATCGACAAAGACGAGGCAATGGCAACAGCAGCAACAGCAGCAGCAACAG TAGCAGCTACAGCAAGTGCAACGACCCACATTCCTCTCCTCTTGATCGCC CGTGGGGGGATTCACAGTAACGGCCTCTTCCTCGATGGCAACGGTCTAGG AGGATTCGACCTCCTCCTCCCCCGGGGGTGGGGGAAAGTGTTTTGGCATG CCATGATGCGCCGACAGGCACATCGGCTCTCTCTGCCTCTCACCCCCCTT CCCTTAGGGCTGAGGGAGAGAGAAGCGGTTGAGGGGGAATGGATGCTCCC CTCCTTCCCGAGATGCTTCCCCGAGACGAGGGAGGGAAGGAGGTGGTGGA AGGAGGGGAGGAGGGAGTGGAGGGAGAAGGAGGGCAAAAGGCCGAAAGGG AAGAGAAGGGAGTGGGGAGAAGAGCCCCCATCTTTTTTGGGTGGGGAAAA GGAGGAATCGAAGGAGGAAAAGGAAGGGGGAGGGTTGGTGGTGATTCGAC GGGCGGAGTGTCTGGAGGCGGCAGTGGCGGTTCCTGAGGCGAGAGGAGCA TTCAAGGGAAGAATCTTTCCCCGTCTCAATTTCTACAACAAATTCAGGGA ATTGCGTTATCCCTCATCTCTTGAGGAGGAAGGGAAGGAAGGAGGGAAGA AAGGAGGCCGGGTGTTGTTGACGCCGTCTCCGTTAGCGATGTCTGGCTAC TATGCAGCAGGGGTATTAAGGTGCCCGTGGACGGGGAAGCCTGCGGCGTT GGCCCAGATCTACCTGCCATCATCGGAGGATTATGGCGTGTGGAAAGCAG AGGAGGAGGGCAGAAAAGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAA GAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGCGG GACTGCCAAAAACAAGCAACAACGTTTTGCTCCTTCCTCCCGCCCGGCGT CCCTCCCGCCCTCGTCCTCCTCCTCATCTTCATCCTTCGAGAGGCATCTA TTAGGATGGACGACTGCAGGGGGCTTCTGTTTGAGGGAGGGAAAAGGCAT GGCACTCGCCCTCCTCAGCATAGAAGTGTTGCGTCTGCTACAGTTCAGGG CGGGTGGGCAGGAGGGAGGGCGGGAGGGAGAGGGGGGGTGTCGGCGGCGA TGGCGGCAGTAGTACTGGTGAGAAATCCTCGATCGACAATCATGTTTCCA GCCAGAATGGGGCTTCAGGTATCTTTTCAATAGAGGGATGAGGTAAGGAA TGAAGGAGGATATGGCATAGTTGAAATTAAAGCAAAAGTAAAAGTTGTTC GAAGGCGAAGAATCGAGGTGG back to topprotein sequence of NO12G03590.1 >NO12G03590.1-protein ID=NO12G03590.1-protein|Name=NO12G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=838bp MALQVLAFAESRRRELLALLRKRKALAETYYRKGRAKAKDGGGKASLLLP VLVAQRRRLRRRTTSHNRRHPRAHKKAKKEKAGESIDTLLLSRAKRRKLE RNGMADPIPGRAKRLETHLWHSKRYPRMNDIWNHRLAYSATRRPSKAPLR AAQKRCVIHDASYVQVLEIKGRIKEGIIKLASLFLDPADVELLEEGARER GERMGDFLMYGCRAFPREALGPARFLWRPVGREGGREEEMEEWRRLWVWL HPSFAAQVLEEIQEEVGREGGREGGEVEVGLAPDSLLFELRGPLSRALLQ EVLIPCATTAIAGAAATGTISRDDVTGGGEVKQEEEEEETDKEGRKRGQD WWAQLPPRLPHGTVLSLLVADPRERRGGGVRGGQQQQQQELEQRQGQQVP QLHLPPSLLWDAAAHARVTEHAGARPDHVVNAEKQARREAEGTWQGLLRG AIDKDEAMATAATAAATVAATASATTHIPLLLIARGGIHSNGLFLDGNGL GGFDLLLPRGWGKVFWHAMMRRQAHRLSLPLTPLPLGLREREAVEGEWML PSFPRCFPETREGRRWWKEGRREWREKEGKRPKGKRREWGEEPPSFLGGE KEESKEEKEGGGLVVIRRAECLEAAVAVPEARGAFKGRIFPRLNFYNKFR ELRYPSSLEEEGKEGGKKGGRVLLTPSPLAMSGYYAAGVLRCPWTGKPAA LAQIYLPSSEDYGVWKAEEEGRKEGEEEEEEEEEEEGGGGGGGGGGGGVG GTAKNKQQRFAPSSRPASLPPSSSSSSSSFERHLLGWTTAGGFCLREGKG MALALLSIEVLRLLQFRAGGQEGGREGEGGCRRRWRQ* back to topmRNA from alignment at chr12:980138..983154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03590.1 ID=NO12G03590.1|Name=NO12G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3017bp|location=Sequence derived from alignment at chr12:980138..983154- (Nannochloropsis oceanica) AGATAGGGAGACAGCCTTTCGGGTACTGGGCTTAACCATTAATTAACGAT
GGCCCTCCAAGTCCTGGCGTTTGCCGAGGTAGGTGCTCCTTTGCGTTGCC
CCCCGATCGGATATGTTGTTGTTACCTCCCCAACCCGCGATTACCCAATT
CTAGAGCCGGCGACGAGAGCTGCTGGCCCTTCTTCGCAAGCGGAAGGCAC
TGGCCGAAACGTACTATCGGAAAGGGCGCGCCAAGGCAAAAGACGGAGGC
GGCAAGGCCAGCCTCTTGCTACCCGTCCTTGTGGCCCAGCGGCGGCGTTT
ACGACGGCGGACCACTTCACATAACCGCCGACACCCGCGGGCACACAAAA
AGGCGAAAAAAGAGAAGGCCGGGGAGTCCATCGACACCCTCCTCTTGTCC
CGTGCCAAGCGCCGGAAGCTGTGAGTACGCACGCAGCAGCCCCCTACCCC
CCCTTTTTTTCATTGCTCGTGAAAAGCCATTACAAGCTCGTGCGCTTTTC
AGTGCATCAAGTAAATATAAGACAGGCAACCCATTGCCTATTAGACGCCA
CTCTCCTTACCCACCCCATCAGTCTCCTACCTCACCTCCTCTTTCTGATT
TCTCCTTTTCTTCATCCCTCCCTCCCTTGCTTTCCCACAGAGAGCGCAAT
GGCATGGCCGATCCCATCCCAGGCCGCGCCAAGCGCCTGGAGACGCACCT
ATGGCACAGCAAGCGCTACCCGCGCATGAATGATATATGGAACCATCGTC
TTGCCTATTCGGCGACCCGCCGACCTAGCAAGGCCCCTTTGAGGGCAGCA
CAGAAGCGGTGCGTGATTCACGATGCCTCTTATGTACAGGTCCTGGAGAT
AAAGGGTAGAATCAAAGAGGGTATTATCAAGCTAGCCTCTTTATTCTTGG
ACCCAGCGGACGTTGAGTTATTAGAGGAGGGAGCGAGGGAGCGAGGGGAG
AGGATGGGGGACTTCTTAATGTACGGCTGCCGAGCCTTTCCAAGAGAGGC
ATTGGGGCCCGCTCGATTCCTGTGGCGGCCGGTGGGAAGAGAGGGAGGGA
GGGAGGAAGAGATGGAGGAATGGCGACGGTTGTGGGTATGGCTGCACCCT
TCGTTTGCCGCGCAGGTGTTGGAAGAAATTCAGGAGGAGGTGGGGAGGGA
GGGAGGGAGGGAGGGAGGGGAGGTGGAAGTCGGACTAGCGCCTGATTCAC
TCTTGTTTGAGTTGAGGGGACCTTTGTCTAGGGCGTTGCTCCAGGAAGTG
TTGATTCCTTGCGCTACTACTGCTATTGCAGGTGCTGCTGCGACTGGTAC
TATTTCTCGTGATGATGTGACTGGCGGGGGGGAGGTGAAGCAGGAAGAAG
AGGAGGAGGAGACAGACAAGGAAGGGAGGAAGAGAGGGCAGGATTGGTGG
GCACAGCTGCCACCTCGTCTTCCGCATGGGACTGTGCTGTCCTTGCTAGT
GGCAGATCCCCGAGAAAGACGAGGAGGAGGAGTAAGAGGAGGGCAGCAGC
AGCAGCAGCAAGAGCTGGAGCAGCGGCAAGGGCAGCAAGTGCCACAACTG
CACCTCCCTCCCTCCCTCCTTTGGGACGCTGCGGCACATGCACGAGTAAC
CGAGCACGCGGGCGCTCGTCCCGATCATGTGGTGAACGCGGAAAAGCAGG
CAAGGAGGGAGGCAGAGGGAACATGGCAAGGCCTTTTACGCGGTGCCATC
GACAAAGACGAGGCAATGGCAACAGCAGCAACAGCAGCAGCAACAGTAGC
AGCTACAGCAAGTGCAACGACCCACATTCCTCTCCTCTTGATCGCCCGTG
GGGGGATTCACAGTAACGGCCTCTTCCTCGATGGCAACGGTCTAGGAGGA
TTCGACCTCCTCCTCCCCCGGGGGTGGGGGAAAGTGTTTTGGCATGCCAT
GATGCGCCGACAGGCACATCGGCTCTCTCTGCCTCTCACCCCCCTTCCCT
TAGGGCTGAGGGAGAGAGAAGCGGTTGAGGGGGAATGGATGCTCCCCTCC
TTCCCGAGATGCTTCCCCGAGACGAGGGAGGGAAGGAGGTGGTGGAAGGA
GGGGAGGAGGGAGTGGAGGGAGAAGGAGGGCAAAAGGCCGAAAGGGAAGA
GAAGGGAGTGGGGAGAAGAGCCCCCATCTTTTTTGGGTGGGGAAAAGGAG
GAATCGAAGGAGGAAAAGGAAGGGGGAGGGTTGGTGGTGATTCGACGGGC
GGAGTGTCTGGAGGCGGCAGTGGCGGTTCCTGAGGCGAGAGGAGCATTCA
AGGGAAGAATCTTTCCCCGTCTCAATTTCTACAACAAATTCAGGGAATTG
CGTTATCCCTCATCTCTTGAGGAGGAAGGGAAGGAAGGAGGGAAGAAAGG
AGGCCGGGTGTTGTTGACGCCGTCTCCGTTAGCGATGTCTGGCTACTATG
CAGCAGGGGTATTAAGGTGCCCGTGGACGGGGAAGCCTGCGGCGTTGGCC
CAGATCTACCTGCCATCATCGGAGGATTATGGCGTGTGGAAAGCAGAGGA
GGAGGGCAGAAAAGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGCGGGACT
GCCAAAAACAAGCAACAACGTTTTGCTCCTTCCTCCCGCCCGGCGTCCCT
CCCGCCCTCGTCCTCCTCCTCATCTTCATCCTTCGAGAGGCATCTATTAG
GATGGACGACTGCAGGGGGCTTCTGTTTGAGGGAGGGAAAAGGCATGGCA
CTCGCCCTCCTCAGCATAGAAGTGTTGCGTCTGCTACAGTTCAGGGCGGG
TGGGCAGGAGGGAGGGCGGGAGGGAGAGGGGGGGTGTCGGCGGCGATGGC
GGCAGTAGTACTGGTGAGAAATCCTCGATCGACAATCATGTTTCCAGCCA
GAATGGGGCTTCAGGTATCTTTTCAATAGAGGGATGAGGTAAGGAATGAA
GGAGGATATGGCATAGTTGAAATTAAAGCAAAAGTAAAAGTTGTTCGAAG
GCGAAGAATCGAGGTGG back to topCoding sequence (CDS) from alignment at chr12:980138..983154- >NO12G03590.1 ID=NO12G03590.1|Name=NO12G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=2514bp|location=Sequence derived from alignment at chr12:980138..983154- (Nannochloropsis oceanica) ATGGCCCTCCAAGTCCTGGCGTTTGCCGAGAGCCGGCGACGAGAGCTGCT GGCCCTTCTTCGCAAGCGGAAGGCACTGGCCGAAACGTACTATCGGAAAG GGCGCGCCAAGGCAAAAGACGGAGGCGGCAAGGCCAGCCTCTTGCTACCC GTCCTTGTGGCCCAGCGGCGGCGTTTACGACGGCGGACCACTTCACATAA CCGCCGACACCCGCGGGCACACAAAAAGGCGAAAAAAGAGAAGGCCGGGG AGTCCATCGACACCCTCCTCTTGTCCCGTGCCAAGCGCCGGAAGCTAGAG CGCAATGGCATGGCCGATCCCATCCCAGGCCGCGCCAAGCGCCTGGAGAC GCACCTATGGCACAGCAAGCGCTACCCGCGCATGAATGATATATGGAACC ATCGTCTTGCCTATTCGGCGACCCGCCGACCTAGCAAGGCCCCTTTGAGG GCAGCACAGAAGCGGTGCGTGATTCACGATGCCTCTTATGTACAGGTCCT GGAGATAAAGGGTAGAATCAAAGAGGGTATTATCAAGCTAGCCTCTTTAT TCTTGGACCCAGCGGACGTTGAGTTATTAGAGGAGGGAGCGAGGGAGCGA GGGGAGAGGATGGGGGACTTCTTAATGTACGGCTGCCGAGCCTTTCCAAG AGAGGCATTGGGGCCCGCTCGATTCCTGTGGCGGCCGGTGGGAAGAGAGG GAGGGAGGGAGGAAGAGATGGAGGAATGGCGACGGTTGTGGGTATGGCTG CACCCTTCGTTTGCCGCGCAGGTGTTGGAAGAAATTCAGGAGGAGGTGGG GAGGGAGGGAGGGAGGGAGGGAGGGGAGGTGGAAGTCGGACTAGCGCCTG ATTCACTCTTGTTTGAGTTGAGGGGACCTTTGTCTAGGGCGTTGCTCCAG GAAGTGTTGATTCCTTGCGCTACTACTGCTATTGCAGGTGCTGCTGCGAC TGGTACTATTTCTCGTGATGATGTGACTGGCGGGGGGGAGGTGAAGCAGG AAGAAGAGGAGGAGGAGACAGACAAGGAAGGGAGGAAGAGAGGGCAGGAT TGGTGGGCACAGCTGCCACCTCGTCTTCCGCATGGGACTGTGCTGTCCTT GCTAGTGGCAGATCCCCGAGAAAGACGAGGAGGAGGAGTAAGAGGAGGGC AGCAGCAGCAGCAGCAAGAGCTGGAGCAGCGGCAAGGGCAGCAAGTGCCA CAACTGCACCTCCCTCCCTCCCTCCTTTGGGACGCTGCGGCACATGCACG AGTAACCGAGCACGCGGGCGCTCGTCCCGATCATGTGGTGAACGCGGAAA AGCAGGCAAGGAGGGAGGCAGAGGGAACATGGCAAGGCCTTTTACGCGGT GCCATCGACAAAGACGAGGCAATGGCAACAGCAGCAACAGCAGCAGCAAC AGTAGCAGCTACAGCAAGTGCAACGACCCACATTCCTCTCCTCTTGATCG CCCGTGGGGGGATTCACAGTAACGGCCTCTTCCTCGATGGCAACGGTCTA GGAGGATTCGACCTCCTCCTCCCCCGGGGGTGGGGGAAAGTGTTTTGGCA TGCCATGATGCGCCGACAGGCACATCGGCTCTCTCTGCCTCTCACCCCCC TTCCCTTAGGGCTGAGGGAGAGAGAAGCGGTTGAGGGGGAATGGATGCTC CCCTCCTTCCCGAGATGCTTCCCCGAGACGAGGGAGGGAAGGAGGTGGTG GAAGGAGGGGAGGAGGGAGTGGAGGGAGAAGGAGGGCAAAAGGCCGAAAG GGAAGAGAAGGGAGTGGGGAGAAGAGCCCCCATCTTTTTTGGGTGGGGAA AAGGAGGAATCGAAGGAGGAAAAGGAAGGGGGAGGGTTGGTGGTGATTCG ACGGGCGGAGTGTCTGGAGGCGGCAGTGGCGGTTCCTGAGGCGAGAGGAG CATTCAAGGGAAGAATCTTTCCCCGTCTCAATTTCTACAACAAATTCAGG GAATTGCGTTATCCCTCATCTCTTGAGGAGGAAGGGAAGGAAGGAGGGAA GAAAGGAGGCCGGGTGTTGTTGACGCCGTCTCCGTTAGCGATGTCTGGCT ACTATGCAGCAGGGGTATTAAGGTGCCCGTGGACGGGGAAGCCTGCGGCG TTGGCCCAGATCTACCTGCCATCATCGGAGGATTATGGCGTGTGGAAAGC AGAGGAGGAGGGCAGAAAAGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGC GGGACTGCCAAAAACAAGCAACAACGTTTTGCTCCTTCCTCCCGCCCGGC GTCCCTCCCGCCCTCGTCCTCCTCCTCATCTTCATCCTTCGAGAGGCATC TATTAGGATGGACGACTGCAGGGGGCTTCTGTTTGAGGGAGGGAAAAGGC ATGGCACTCGCCCTCCTCAGCATAGAAGTGTTGCGTCTGCTACAGTTCAG GGCGGGTGGGCAGGAGGGAGGGCGGGAGGGAGAGGGGGGGTGTCGGCGGC GATGGCGGCAGTAG back to top
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