|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:958678..960921 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03500.1 vs.
Match: EWM25691.1 (eukaryotic translation initiation factor 3 [Nannochloropsis gaditana]) HSP 1 Score: 1280.8 bits (3313), Expect = 0.000e+0 Identity = 621/748 (83.02%), Postives = 678/748 (90.64%), Query Frame = 0
Query: 1 MPGEDYDNDYGEQLDSLATIDEELKGYLSEGPTDWVEPVYEPDYSTAIVVDNLPKVPKDKYEKLLGYVRKIYQQIGPLAEDGLQMPVDDATGMTQGYAFINFFARDSAEKAIAATNNWNFDKAHALKVNSYVDLVRTMAHPETYTPQPARPLTTVPGLYAWLKDAQFRDQFVVRHGRDTEVFWAEAGGTPELVYGGEREKAAGQGRFWCDQYVAWSKTGAYLLTYHRQGVALWGGPNFEKVARLAHHGVALAHFSNTDRYLVTYSYPQVPGDGPGHVVVWDVERSISVQQQVALRSWPVEPYGKGNYFKWSHDDKYIAVGKSAYLRNPQAAQAAMDESGGGGGLPGHQKQVSMGGVGGDGVMDDVEGQISVFEVPSMELLDRKSIRAEGLRGWDWCPKSNLLAYWAPEKQQQPARVVLVELPSKKEVRRKPLFHVEDCALTWQNEGEYLCAKVTHKKRQSKKKVSLELFRIKEAGIALEMVELDPTPVQDFAWEPAGHRFALLHGEDA--HPFTVSFYSMLQPVTGQKEVTLLHRLESPKARTVNKLLWSPNGSIIVLANLTEGSTLEFYDVDTQSSLAKRDDLSRIDYLKWDPSGRYLTDAIQQPMGNSYYKYSYDNGFRVWTFQGTLIAHIEKPQFYMFQWRPRPPSLLTAEQQRKVKKDLRKYERRFDKEDREKEMNKKREEWRRKGARRAEFRSFYARRREEMMARKEELIALQKGYDDEDPDNYEVRVVTRRMVPLGEPEMAG 747
M GEDY++ Y + IDEELKGY+SEG TDW EPVYEPD+STAIVVDNLPKV ++KY++L+ +VRKIY Q+G +AEDGLQMP+D+ATGMT G+AFINF RDSAEKAIAATNNWN DKAHALKVNSYVDLV+T HPETYTP+PARPLTTVPGLY WLKDAQ+RDQFVVRHGRDTEV+WAE GGTPELVYGGEREKA GQGR+WCDQYV WSKTGAYLLTYHRQGVALWGGP FEKVARLAHHGVALA FSNTDRYLVTYSYP DGPGHVVVWDVERSIS+Q+QVALRSWPVEP+GKGN+FKWSHDDKYIAVGKS YLRNPQAAQA +DESGGGG GH KQ S G G+G +D EGQISVFE PSMELLDRKSIRAEGLRG+DWCPK NL+AYWAPE+QQQPARVVLVELPSKKEVRRKPLF+VEDC LTWQNEGEYLCA+VTHKKRQSKKKVSLELFR+KEAGIALEMVE+D TPV+DFAWEPAGHRFA++HG+DA + F+VSFYSM+ P TGQKEVTLL+RLE KAR VNKLLWSPNGSIIVLA L E S+LEFYDVD+ S+LAKRDDLSRIDYLKWDPSGRYLTDAIQQPMGNSYYKYSYDNGFR+WTFQGTLIAH+EK QFYMFQWRPRPPSLLTAEQQRKVKKDLRKYERRFDKEDREKEMNKK+EEWR+KGARRAEFR+FYA R E ARK EL+ALQKGYDDE+ +NYE+RVVTRRMVPLG+PE+AG
Sbjct: 36 MAGEDYEHHYSD-----VPIDEELKGYISEGRTDWEEPVYEPDFSTAIVVDNLPKVSREKYDRLMVFVRKIYDQVGKIAEDGLQMPLDEATGMTLGFAFINFLTRDSAEKAIAATNNWNLDKAHALKVNSYVDLVKTTTHPETYTPEPARPLTTVPGLYDWLKDAQYRDQFVVRHGRDTEVYWAEPGGTPELVYGGEREKAMGQGRYWCDQYVTWSKTGAYLLTYHRQGVALWGGPKFEKVARLAHHGVALAQFSNTDRYLVTYSYPD---DGPGHVVVWDVERSISIQEQVALRSWPVEPFGKGNHFKWSHDDKYIAVGKSKYLRNPQAAQAGLDESGGGGA--GHVKQGSTGAGVGEGGPEDGEGQISVFEAPSMELLDRKSIRAEGLRGFDWCPKDNLIAYWAPERQQQPARVVLVELPSKKEVRRKPLFYVEDCELTWQNEGEYLCAQVTHKKRQSKKKVSLELFRVKEAGIALEMVEIDATPVRDFAWEPAGHRFAIIHGDDANSYRFSVSFYSMIHPTTGQKEVTLLYRLEGQKARPVNKLLWSPNGSIIVLAKLAEASSLEFYDVDSHSTLAKRDDLSRIDYLKWDPSGRYLTDAIQQPMGNSYYKYSYDNGFRMWTFQGTLIAHVEKNQFYMFQWRPRPPSLLTAEQQRKVKKDLRKYERRFDKEDREKEMNKKKEEWRKKGARRAEFRAFYATRLAEFQARKAELVALQKGYDDEELENYEIRVVTRRMVPLGDPELAG 773
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03500.1 ID=NO12G03500.1|Name=NO12G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp
ATGCCGGGCGAGGACTACGACAACGACTACGGCGAGCAGCTTGACTCACT
CGCCACCATCGATGAGGAGCTGAAGGGCTACCTCTCGGAAGGGCCAACCG
ATTGGGTGGAGCCCGTCTACGAGCCTGACTACTCCACCGCCATCGTCGTC
GACAACCTGCCCAAGGTCCCCAAAGACAAGTACGAGAAGCTCCTGGGCTA
TGTTCGAAAGATCTACCAGCAAATCGGACCCCTGGCCGAGGACGGTTTGC
AGATGCCCGTGGACGATGCGACTGGGATGACCCAAGGCTATGCCTTCATC
AACTTCTTCGCGCGCGACTCGGCCGAGAAAGCCATCGCCGCCACCAACAA
CTGGAACTTCGACAAGGCCCACGCTCTGAAAGTCAACAGCTACGTTGACT
TGGTCCGGACGATGGCGCATCCCGAAACCTATACCCCTCAGCCAGCGCGT
CCTTTAACGACGGTGCCGGGGCTGTATGCGTGGTTGAAGGATGCTCAGTT
CCGCGACCAGTTCGTGGTGCGCCACGGGAGAGACACTGAAGTATTCTGGG
CGGAGGCGGGAGGAACCCCCGAGTTGGTGTATGGAGGGGAGAGGGAGAAG
GCGGCGGGACAAGGGAGGTTTTGGTGTGACCAGTACGTGGCATGGAGTAA
AACGGGGGCTTACCTTCTGACCTACCACAGGCAGGGCGTTGCCCTGTGGG
GAGGCCCAAATTTCGAGAAAGTGGCACGATTGGCGCATCATGGTGTGGCG
CTTGCGCACTTTTCGAATACGGATCGGTACCTGGTCACGTATTCGTATCC
GCAAGTACCGGGGGATGGGCCCGGTCATGTGGTTGTGTGGGACGTGGAGA
GGTCCATCTCGGTGCAGCAGCAGGTTGCATTAAGATCCTGGCCTGTGGAG
CCTTATGGAAAAGGGAATTATTTCAAGTGGTCGCATGATGATAAATATAT
TGCGGTGGGAAAGAGTGCGTATCTGAGGAACCCTCAGGCAGCCCAAGCAG
CGATGGACGAGAGTGGAGGAGGAGGGGGCCTGCCAGGGCATCAGAAGCAG
GTGAGCATGGGGGGCGTTGGAGGAGATGGAGTGATGGATGATGTGGAGGG
TCAGATCAGCGTGTTTGAGGTTCCCAGTATGGAGTTGTTGGATCGGAAGT
CGATACGAGCCGAGGGACTGCGGGGTTGGGACTGGTGTCCCAAGTCGAAC
CTGCTCGCTTACTGGGCACCGGAGAAGCAGCAACAGCCGGCGAGGGTGGT
GTTGGTGGAATTGCCTAGCAAGAAAGAGGTGCGACGTAAGCCTTTGTTTC
ATGTGGAAGACTGCGCGCTGACGTGGCAGAATGAGGGGGAGTACCTGTGC
GCGAAAGTGACGCACAAGAAGCGCCAGTCCAAGAAAAAGGTTTCCCTGGA
GCTTTTCCGCATCAAGGAAGCAGGGATCGCCCTCGAAATGGTCGAGTTGG
ATCCCACTCCTGTCCAGGATTTCGCGTGGGAGCCTGCGGGCCACCGATTC
GCGCTCCTTCATGGGGAGGATGCGCACCCTTTCACGGTGTCATTTTATTC
CATGTTGCAACCAGTGACGGGACAGAAGGAGGTTACCCTCCTCCACCGCC
TGGAGAGCCCTAAGGCCCGCACGGTGAACAAGCTATTATGGTCTCCGAAT
GGCTCCATCATTGTGTTGGCGAACCTAACGGAGGGGAGTACGTTGGAATT
TTACGACGTGGACACCCAAAGCAGCCTTGCGAAGCGGGATGACTTGTCTC
GCATCGATTACTTGAAGTGGGATCCGTCAGGGCGATACCTCACTGATGCG
ATTCAACAGCCGATGGGTAACAGCTACTACAAATATAGCTACGACAACGG
GTTCCGGGTATGGACGTTTCAGGGAACGCTGATAGCGCATATTGAGAAGC
CGCAGTTTTATATGTTTCAATGGCGACCTCGCCCGCCTTCGCTGTTGACG
GCGGAACAGCAGAGAAAGGTGAAGAAAGACTTGAGGAAGTACGAGAGGAG
GTTTGACAAGGAGGACCGAGAGAAGGAAATGAATAAGAAGAGGGAGGAGT
GGAGGAGGAAGGGGGCCAGACGGGCGGAGTTCAGGTCGTTCTATGCGAGG
AGGAGGGAGGAGATGATGGCTAGGAAGGAGGAGCTGATTGCGTTGCAGAA
GGGGTATGATGACGAGGACCCGGATAATTATGAGGTGAGAGTGGTGACCA
GACGGATGGTGCCATTGGGGGAGCCGGAGATGGCGGGGCAGTGA back to topprotein sequence of NO12G03500.1 >NO12G03500.1-protein ID=NO12G03500.1-protein|Name=NO12G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp
MPGEDYDNDYGEQLDSLATIDEELKGYLSEGPTDWVEPVYEPDYSTAIVV
DNLPKVPKDKYEKLLGYVRKIYQQIGPLAEDGLQMPVDDATGMTQGYAFI
NFFARDSAEKAIAATNNWNFDKAHALKVNSYVDLVRTMAHPETYTPQPAR
PLTTVPGLYAWLKDAQFRDQFVVRHGRDTEVFWAEAGGTPELVYGGEREK
AAGQGRFWCDQYVAWSKTGAYLLTYHRQGVALWGGPNFEKVARLAHHGVA
LAHFSNTDRYLVTYSYPQVPGDGPGHVVVWDVERSISVQQQVALRSWPVE
PYGKGNYFKWSHDDKYIAVGKSAYLRNPQAAQAAMDESGGGGGLPGHQKQ
VSMGGVGGDGVMDDVEGQISVFEVPSMELLDRKSIRAEGLRGWDWCPKSN
LLAYWAPEKQQQPARVVLVELPSKKEVRRKPLFHVEDCALTWQNEGEYLC
AKVTHKKRQSKKKVSLELFRIKEAGIALEMVELDPTPVQDFAWEPAGHRF
ALLHGEDAHPFTVSFYSMLQPVTGQKEVTLLHRLESPKARTVNKLLWSPN
GSIIVLANLTEGSTLEFYDVDTQSSLAKRDDLSRIDYLKWDPSGRYLTDA
IQQPMGNSYYKYSYDNGFRVWTFQGTLIAHIEKPQFYMFQWRPRPPSLLT
AEQQRKVKKDLRKYERRFDKEDREKEMNKKREEWRRKGARRAEFRSFYAR
RREEMMARKEELIALQKGYDDEDPDNYEVRVVTRRMVPLGEPEMAGQ* back to topmRNA from alignment at chr12:958678..960921+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03500.1 ID=NO12G03500.1|Name=NO12G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp|location=Sequence derived from alignment at chr12:958678..960921+ (Nannochloropsis oceanica)
ATGCCGGGCGAGGACTACGACAACGACTACGGCGAGCAGCTTGACTCACT
CGCCACCATCGATGAGGAGCTGAAGGGCTACCTCTCGGAAGGGCCAACCG
ATTGGGTGGAGCCCGTCTACGAGCCTGACTACTCCACCGCCATCGTCGTC
GACAACCTGCCCAAGGTCCCCAAAGACAAGTACGAGAAGCTCCTGGGCTA
TGTTCGAAAGATCTACCAGCAAATCGGACCCCTGGCCGAGGACGGTTTGC
AGATGCCCGTGGACGATGCGACTGGGATGACCCAAGGCTATGCCTTCATC
AACTTCTTCGCGCGCGACTCGGCCGAGAAAGCCATCGCCGCCACCAACAA
CTGGAACTTCGACAAGGCCCACGCTCTGAAAGTCAACAGCTACGTTGACT
TGGTCCGGACGATGGCGCATCCCGAAACCTATACCCCTCAGCCAGCGCGT
CCTTTAACGACGGTGCCGGGGCTGTATGCGTGGTTGAAGGATGCTCAGTT
CCGCGACCAGTTCGTGGTGCGCCACGGGAGAGACACTGAAGTATTCTGGG
CGGAGGCGGGAGGAACCCCCGAGTTGGTGTATGGAGGGGAGAGGGAGAAG
GCGGCGGGACAAGGGAGGTTTTGGTGTGACCAGTACGTGGCATGGAGTAA
AACGGGGGCTTACCTTCTGACCTACCACAGGCAGGGCGTTGCCCTGTGGG
GAGGCCCAAATTTCGAGAAAGTGGCACGATTGGCGCATCATGGTGTGGCG
CTTGCGCACTTTTCGAATACGGATCGGTACCTGGTCACGTATTCGTATCC
GCAAGTACCGGGGGATGGGCCCGGTCATGTGGTTGTGTGGGACGTGGAGA
GGTCCATCTCGGTGCAGCAGCAGGTTGCATTAAGATCCTGGCCTGTGGAG
CCTTATGGAAAAGGGAATTATTTCAAGTGGTCGCATGATGATAAATATAT
TGCGGTGGGAAAGAGTGCGTATCTGAGGAACCCTCAGGCAGCCCAAGCAG
CGATGGACGAGAGTGGAGGAGGAGGGGGCCTGCCAGGGCATCAGAAGCAG
GTGAGCATGGGGGGCGTTGGAGGAGATGGAGTGATGGATGATGTGGAGGG
TCAGATCAGCGTGTTTGAGGTTCCCAGTATGGAGTTGTTGGATCGGAAGT
CGATACGAGCCGAGGGACTGCGGGGTTGGGACTGGTGTCCCAAGTCGAAC
CTGCTCGCTTACTGGGCACCGGAGAAGCAGCAACAGCCGGCGAGGGTGGT
GTTGGTGGAATTGCCTAGCAAGAAAGAGGTGCGACGTAAGCCTTTGTTTC
ATGTGGAAGACTGCGCGCTGACGTGGCAGAATGAGGGGGAGTACCTGTGC
GCGAAAGTGACGCACAAGAAGCGCCAGTCCAAGAAAAAGGTTTCCCTGGA
GCTTTTCCGCATCAAGGAAGCAGGGATCGCCCTCGAAATGGTCGAGTTGG
ATCCCACTCCTGTCCAGGATTTCGCGTGGGAGCCTGCGGGCCACCGATTC
GCGCTCCTTCATGGGGAGGATGCGCACCCTTTCACGGTGTCATTTTATTC
CATGTTGCAACCAGTGACGGGACAGAAGGAGGTTACCCTCCTCCACCGCC
TGGAGAGCCCTAAGGCCCGCACGGTGAACAAGCTATTATGGTCTCCGAAT
GGCTCCATCATTGTGTTGGCGAACCTAACGGAGGGGAGTACGTTGGAATT
TTACGACGTGGACACCCAAAGCAGCCTTGCGAAGCGGGATGACTTGTCTC
GCATCGATTACTTGAAGTGGGATCCGTCAGGGCGATACCTCACTGATGCG
ATTCAACAGCCGATGGGTAACAGCTACTACAAATATAGCTACGACAACGG
GTTCCGGGTATGGACGTTTCAGGGAACGCTGATAGCGCATATTGAGAAGC
CGCAGTTTTATATGTTTCAATGGCGACCTCGCCCGCCTTCGCTGTTGACG
GCGGAACAGCAGAGAAAGGTGAAGAAAGACTTGAGGAAGTACGAGAGGAG
GTTTGACAAGGAGGACCGAGAGAAGGAAATGAATAAGAAGAGGGAGGAGT
GGAGGAGGAAGGGGGCCAGACGGGCGGAGTTCAGGTCGTTCTATGCGAGG
AGGAGGGAGGAGATGATGGCTAGGAAGGAGGAGCTGATTGCGTTGCAGAA
GGGGTATGATGACGAGGACCCGGATAATTATGAGGTGAGAGTGGTGACCA
GACGGATGGTGCCATTGGGGGAGCCGGAGATGGCGGGGCAGTGA back to topCoding sequence (CDS) from alignment at chr12:958678..960921+ >NO12G03500.1 ID=NO12G03500.1|Name=NO12G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at chr12:958678..960921+ (Nannochloropsis oceanica)
ATGCCGGGCGAGGACTACGACAACGACTACGGCGAGCAGCTTGACTCACT
CGCCACCATCGATGAGGAGCTGAAGGGCTACCTCTCGGAAGGGCCAACCG
ATTGGGTGGAGCCCGTCTACGAGCCTGACTACTCCACCGCCATCGTCGTC
GACAACCTGCCCAAGGTCCCCAAAGACAAGTACGAGAAGCTCCTGGGCTA
TGTTCGAAAGATCTACCAGCAAATCGGACCCCTGGCCGAGGACGGTTTGC
AGATGCCCGTGGACGATGCGACTGGGATGACCCAAGGCTATGCCTTCATC
AACTTCTTCGCGCGCGACTCGGCCGAGAAAGCCATCGCCGCCACCAACAA
CTGGAACTTCGACAAGGCCCACGCTCTGAAAGTCAACAGCTACGTTGACT
TGGTCCGGACGATGGCGCATCCCGAAACCTATACCCCTCAGCCAGCGCGT
CCTTTAACGACGGTGCCGGGGCTGTATGCGTGGTTGAAGGATGCTCAGTT
CCGCGACCAGTTCGTGGTGCGCCACGGGAGAGACACTGAAGTATTCTGGG
CGGAGGCGGGAGGAACCCCCGAGTTGGTGTATGGAGGGGAGAGGGAGAAG
GCGGCGGGACAAGGGAGGTTTTGGTGTGACCAGTACGTGGCATGGAGTAA
AACGGGGGCTTACCTTCTGACCTACCACAGGCAGGGCGTTGCCCTGTGGG
GAGGCCCAAATTTCGAGAAAGTGGCACGATTGGCGCATCATGGTGTGGCG
CTTGCGCACTTTTCGAATACGGATCGGTACCTGGTCACGTATTCGTATCC
GCAAGTACCGGGGGATGGGCCCGGTCATGTGGTTGTGTGGGACGTGGAGA
GGTCCATCTCGGTGCAGCAGCAGGTTGCATTAAGATCCTGGCCTGTGGAG
CCTTATGGAAAAGGGAATTATTTCAAGTGGTCGCATGATGATAAATATAT
TGCGGTGGGAAAGAGTGCGTATCTGAGGAACCCTCAGGCAGCCCAAGCAG
CGATGGACGAGAGTGGAGGAGGAGGGGGCCTGCCAGGGCATCAGAAGCAG
GTGAGCATGGGGGGCGTTGGAGGAGATGGAGTGATGGATGATGTGGAGGG
TCAGATCAGCGTGTTTGAGGTTCCCAGTATGGAGTTGTTGGATCGGAAGT
CGATACGAGCCGAGGGACTGCGGGGTTGGGACTGGTGTCCCAAGTCGAAC
CTGCTCGCTTACTGGGCACCGGAGAAGCAGCAACAGCCGGCGAGGGTGGT
GTTGGTGGAATTGCCTAGCAAGAAAGAGGTGCGACGTAAGCCTTTGTTTC
ATGTGGAAGACTGCGCGCTGACGTGGCAGAATGAGGGGGAGTACCTGTGC
GCGAAAGTGACGCACAAGAAGCGCCAGTCCAAGAAAAAGGTTTCCCTGGA
GCTTTTCCGCATCAAGGAAGCAGGGATCGCCCTCGAAATGGTCGAGTTGG
ATCCCACTCCTGTCCAGGATTTCGCGTGGGAGCCTGCGGGCCACCGATTC
GCGCTCCTTCATGGGGAGGATGCGCACCCTTTCACGGTGTCATTTTATTC
CATGTTGCAACCAGTGACGGGACAGAAGGAGGTTACCCTCCTCCACCGCC
TGGAGAGCCCTAAGGCCCGCACGGTGAACAAGCTATTATGGTCTCCGAAT
GGCTCCATCATTGTGTTGGCGAACCTAACGGAGGGGAGTACGTTGGAATT
TTACGACGTGGACACCCAAAGCAGCCTTGCGAAGCGGGATGACTTGTCTC
GCATCGATTACTTGAAGTGGGATCCGTCAGGGCGATACCTCACTGATGCG
ATTCAACAGCCGATGGGTAACAGCTACTACAAATATAGCTACGACAACGG
GTTCCGGGTATGGACGTTTCAGGGAACGCTGATAGCGCATATTGAGAAGC
CGCAGTTTTATATGTTTCAATGGCGACCTCGCCCGCCTTCGCTGTTGACG
GCGGAACAGCAGAGAAAGGTGAAGAAAGACTTGAGGAAGTACGAGAGGAG
GTTTGACAAGGAGGACCGAGAGAAGGAAATGAATAAGAAGAGGGAGGAGT
GGAGGAGGAAGGGGGCCAGACGGGCGGAGTTCAGGTCGTTCTATGCGAGG
AGGAGGGAGGAGATGATGGCTAGGAAGGAGGAGCTGATTGCGTTGCAGAA
GGGGTATGATGACGAGGACCCGGATAATTATGAGGTGAGAGTGGTGACCA
GACGGATGGTGCCATTGGGGGAGCCGGAGATGGCGGGGCAGTGA back to top
|