NO12G03290.1, NO12G03290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03290.1
Unique NameNO12G03290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1254
Alignment locationchr12:906856..908109 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:906856..908109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03290.1 vs.
Match: EWM25716.1 (aldehyde dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 628.2 bits (1619), Expect = 1.800e-176
Identity = 303/381 (79.53%), Postives = 345/381 (90.55%), Query Frame = 0 
Query:   30 RTMSSSTTTSQMERYAFLAELGISQTIPQKGVCDGHTWYGSGPQHQQINPATGEVIGTVQFGTSKDYHKAVSAMLAIKDKWALTPAPIRGEVVRQIGQRLREKQQALGALVSAEMGKILAEGVGEVQEAIDICDFAVGLSRSLNGSVIPSERPGHFMMERYNPLHGCVGIVSAFNFPCAVYFWNVAISLICGNVNLWKPAETTSLVAVALVKVIQDVLKEGGHDPAIATLVCGTGKEVGEVLVQDQRIELVSFTGSTAVGRYVNQVVAGRFGKALLELGGNNGMIIDKDADLDLAVRATLFGAVGTAGQRCTSLRRLFVHEAVYEEVVGRVGRAYASVKIGDPLDRGTLCGPVHTAAAVEKFLSTVAEAKKEGGRVLVGGR 411
            R MSSS+   Q +RYAFL++LG+SQT  QKGVCDG++WY SGP+H QINPATGEVIGTV+FG+  DY +AV AMLA K+KWALTPAP+RGEVVRQIGQR+REKQ ALGALVSAEMGKIL EG+GEVQEA+DICDFAVGLSR+LNGSVIPSERPGHFMMER+NPL GCVGI+SAFNFPCAVYFWNVA+SL+CGNVNLWKPAETTSLVA+A VK++QDVLKE GHDPA+ATLVCG GKE+GE L+QD R+ELVSFTGSTAVGR+VNQVVAGRFG+ALLELGGNN MIID+DADLDLAVRA LFGAVGTAGQRCTSLRRLF+H  VYEEV+GR+ +AYASVKIGDPLD  TLCGP+H    V+ F +TVA+A +EGG+VLVGG+
Sbjct:   41 RFMSSSSVRPQ-QRYAFLSDLGLSQTTTQKGVCDGYSWYASGPKHSQINPATGEVIGTVEFGSGDDYERAVKAMLAAKEKWALTPAPVRGEVVRQIGQRIREKQHALGALVSAEMGKILPEGIGEVQEAVDICDFAVGLSRTLNGSVIPSERPGHFMMERWNPLQGCVGIISAFNFPCAVYFWNVALSLVCGNVNLWKPAETTSLVAIAFVKLVQDVLKESGHDPAVATLVCGHGKEIGEALIQDPRMELVSFTGSTAVGRHVNQVVAGRFGRALLELGGNNAMIIDRDADLDLAVRAALFGAVGTAGQRCTSLRRLFLHADVYEEVLGRLKQAYASVKIGDPLDSQTLCGPLHRPEGVKLFTTTVAKALEEGGKVLVGGQ 420
The following BLAST results are available for this feature:
BLAST of NO12G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25716.11.800e-17679.53aldehyde dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03290NO12G03290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03290.1NO12G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03290.1.cds1NO12G03290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03290.1 ID=NO12G03290.1|Name=NO12G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp
ATGTCCATTGCGGCCGCCGTTACTCCTCACTGTCGCCGTCCTTTTCTTTT
CACCGCCACCCGCGCCATCACTCGCATCACCAATTCTCGCACCATGTCGT
CCTCCACCACCACCTCGCAAATGGAACGCTACGCTTTCCTCGCCGAGTTA
GGCATCTCTCAAACGATTCCTCAAAAGGGCGTCTGTGATGGCCACACGTG
GTACGGCTCCGGGCCGCAGCACCAGCAGATTAATCCCGCCACTGGCGAAG
TAATAGGGACTGTGCAGTTTGGCACCAGCAAAGATTACCATAAAGCCGTC
TCAGCCATGCTAGCCATAAAGGACAAGTGGGCTCTAACTCCCGCCCCCAT
CCGCGGCGAGGTGGTGCGTCAGATCGGGCAGCGTCTTCGGGAGAAGCAGC
AAGCCTTGGGTGCCTTAGTCAGTGCGGAAATGGGTAAAATCCTCGCGGAA
GGCGTAGGTGAAGTGCAGGAGGCCATCGACATTTGTGATTTTGCCGTAGG
GTTGAGTCGATCTTTGAATGGGTCTGTCATTCCTTCGGAGAGACCTGGAC
ACTTCATGATGGAGCGCTACAACCCTCTGCATGGGTGCGTGGGCATCGTT
TCTGCTTTCAATTTTCCTTGTGCCGTATACTTTTGGAACGTCGCCATCAG
CCTTATTTGTGGCAATGTCAACCTGTGGAAGCCCGCGGAGACGACATCAT
TGGTGGCTGTTGCCTTAGTGAAGGTAATCCAGGACGTGTTGAAGGAAGGA
GGGCATGACCCCGCCATTGCGACCTTGGTGTGTGGCACGGGCAAGGAGGT
GGGGGAGGTACTGGTCCAAGACCAGAGAATTGAGCTGGTAAGTTTCACGG
GCAGCACCGCAGTAGGGAGGTATGTGAATCAGGTAGTGGCGGGAAGGTTC
GGCAAGGCACTTTTGGAACTAGGAGGAAACAATGGGATGATTATTGACAA
GGATGCGGATTTGGATTTAGCTGTTCGGGCAACGCTCTTTGGGGCTGTAG
GGACGGCGGGGCAACGCTGCACGAGCTTGCGGCGATTGTTTGTGCATGAG
GCGGTGTATGAGGAGGTGGTGGGGAGGGTGGGACGTGCGTACGCCTCGGT
GAAGATTGGGGATCCATTGGACCGAGGTACTTTATGTGGACCAGTGCACA
CAGCCGCGGCCGTGGAAAAGTTTTTGAGTACAGTAGCCGAGGCCAAGAAA
GAGGGGGGGAGGGTGTTGGTGGGGGGAAGGTGTGGGAGGGAAAGGGGTTG
TTAA
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protein sequence of NO12G03290.1

>NO12G03290.1-protein ID=NO12G03290.1-protein|Name=NO12G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MSIAAAVTPHCRRPFLFTATRAITRITNSRTMSSSTTTSQMERYAFLAEL
GISQTIPQKGVCDGHTWYGSGPQHQQINPATGEVIGTVQFGTSKDYHKAV
SAMLAIKDKWALTPAPIRGEVVRQIGQRLREKQQALGALVSAEMGKILAE
GVGEVQEAIDICDFAVGLSRSLNGSVIPSERPGHFMMERYNPLHGCVGIV
SAFNFPCAVYFWNVAISLICGNVNLWKPAETTSLVAVALVKVIQDVLKEG
GHDPAIATLVCGTGKEVGEVLVQDQRIELVSFTGSTAVGRYVNQVVAGRF
GKALLELGGNNGMIIDKDADLDLAVRATLFGAVGTAGQRCTSLRRLFVHE
AVYEEVVGRVGRAYASVKIGDPLDRGTLCGPVHTAAAVEKFLSTVAEAKK
EGGRVLVGGRCGRERGC*
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mRNA from alignment at chr12:906856..908109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03290.1 ID=NO12G03290.1|Name=NO12G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at chr12:906856..908109- (Nannochloropsis oceanica)
ATGTCCATTGCGGCCGCCGTTACTCCTCACTGTCGCCGTCCTTTTCTTTT
CACCGCCACCCGCGCCATCACTCGCATCACCAATTCTCGCACCATGTCGT
CCTCCACCACCACCTCGCAAATGGAACGCTACGCTTTCCTCGCCGAGTTA
GGCATCTCTCAAACGATTCCTCAAAAGGGCGTCTGTGATGGCCACACGTG
GTACGGCTCCGGGCCGCAGCACCAGCAGATTAATCCCGCCACTGGCGAAG
TAATAGGGACTGTGCAGTTTGGCACCAGCAAAGATTACCATAAAGCCGTC
TCAGCCATGCTAGCCATAAAGGACAAGTGGGCTCTAACTCCCGCCCCCAT
CCGCGGCGAGGTGGTGCGTCAGATCGGGCAGCGTCTTCGGGAGAAGCAGC
AAGCCTTGGGTGCCTTAGTCAGTGCGGAAATGGGTAAAATCCTCGCGGAA
GGCGTAGGTGAAGTGCAGGAGGCCATCGACATTTGTGATTTTGCCGTAGG
GTTGAGTCGATCTTTGAATGGGTCTGTCATTCCTTCGGAGAGACCTGGAC
ACTTCATGATGGAGCGCTACAACCCTCTGCATGGGTGCGTGGGCATCGTT
TCTGCTTTCAATTTTCCTTGTGCCGTATACTTTTGGAACGTCGCCATCAG
CCTTATTTGTGGCAATGTCAACCTGTGGAAGCCCGCGGAGACGACATCAT
TGGTGGCTGTTGCCTTAGTGAAGGTAATCCAGGACGTGTTGAAGGAAGGA
GGGCATGACCCCGCCATTGCGACCTTGGTGTGTGGCACGGGCAAGGAGGT
GGGGGAGGTACTGGTCCAAGACCAGAGAATTGAGCTGGTAAGTTTCACGG
GCAGCACCGCAGTAGGGAGGTATGTGAATCAGGTAGTGGCGGGAAGGTTC
GGCAAGGCACTTTTGGAACTAGGAGGAAACAATGGGATGATTATTGACAA
GGATGCGGATTTGGATTTAGCTGTTCGGGCAACGCTCTTTGGGGCTGTAG
GGACGGCGGGGCAACGCTGCACGAGCTTGCGGCGATTGTTTGTGCATGAG
GCGGTGTATGAGGAGGTGGTGGGGAGGGTGGGACGTGCGTACGCCTCGGT
GAAGATTGGGGATCCATTGGACCGAGGTACTTTATGTGGACCAGTGCACA
CAGCCGCGGCCGTGGAAAAGTTTTTGAGTACAGTAGCCGAGGCCAAGAAA
GAGGGGGGGAGGGTGTTGGTGGGGGGAAGGTGTGGGAGGGAAAGGGGTTG
TTAA
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Coding sequence (CDS) from alignment at chr12:906856..908109-

>NO12G03290.1 ID=NO12G03290.1|Name=NO12G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr12:906856..908109- (Nannochloropsis oceanica)
ATGTCCATTGCGGCCGCCGTTACTCCTCACTGTCGCCGTCCTTTTCTTTT
CACCGCCACCCGCGCCATCACTCGCATCACCAATTCTCGCACCATGTCGT
CCTCCACCACCACCTCGCAAATGGAACGCTACGCTTTCCTCGCCGAGTTA
GGCATCTCTCAAACGATTCCTCAAAAGGGCGTCTGTGATGGCCACACGTG
GTACGGCTCCGGGCCGCAGCACCAGCAGATTAATCCCGCCACTGGCGAAG
TAATAGGGACTGTGCAGTTTGGCACCAGCAAAGATTACCATAAAGCCGTC
TCAGCCATGCTAGCCATAAAGGACAAGTGGGCTCTAACTCCCGCCCCCAT
CCGCGGCGAGGTGGTGCGTCAGATCGGGCAGCGTCTTCGGGAGAAGCAGC
AAGCCTTGGGTGCCTTAGTCAGTGCGGAAATGGGTAAAATCCTCGCGGAA
GGCGTAGGTGAAGTGCAGGAGGCCATCGACATTTGTGATTTTGCCGTAGG
GTTGAGTCGATCTTTGAATGGGTCTGTCATTCCTTCGGAGAGACCTGGAC
ACTTCATGATGGAGCGCTACAACCCTCTGCATGGGTGCGTGGGCATCGTT
TCTGCTTTCAATTTTCCTTGTGCCGTATACTTTTGGAACGTCGCCATCAG
CCTTATTTGTGGCAATGTCAACCTGTGGAAGCCCGCGGAGACGACATCAT
TGGTGGCTGTTGCCTTAGTGAAGGTAATCCAGGACGTGTTGAAGGAAGGA
GGGCATGACCCCGCCATTGCGACCTTGGTGTGTGGCACGGGCAAGGAGGT
GGGGGAGGTACTGGTCCAAGACCAGAGAATTGAGCTGGTAAGTTTCACGG
GCAGCACCGCAGTAGGGAGGTATGTGAATCAGGTAGTGGCGGGAAGGTTC
GGCAAGGCACTTTTGGAACTAGGAGGAAACAATGGGATGATTATTGACAA
GGATGCGGATTTGGATTTAGCTGTTCGGGCAACGCTCTTTGGGGCTGTAG
GGACGGCGGGGCAACGCTGCACGAGCTTGCGGCGATTGTTTGTGCATGAG
GCGGTGTATGAGGAGGTGGTGGGGAGGGTGGGACGTGCGTACGCCTCGGT
GAAGATTGGGGATCCATTGGACCGAGGTACTTTATGTGGACCAGTGCACA
CAGCCGCGGCCGTGGAAAAGTTTTTGAGTACAGTAGCCGAGGCCAAGAAA
GAGGGGGGGAGGGTGTTGGTGGGGGGAAGGTGTGGGAGGGAAAGGGGTTG
TTAA
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Synonyms
Publications