NO12G02900.1, NO12G02900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02900.1
Unique NameNO12G02900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length408
Alignment locationchr12:804270..804677 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:804270..804677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02900.1 vs.
Match: EWM29590.1 (hypothetical protein Naga_100006g38 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 7.100e-10
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0 
Query:   34 QFQGPTVDGLPLDYCLHYELAHYGPDNSLTAKHGHDCGKPAADEFCIRQGYKEGSEWFSVMYYSRGATYVLGDEAVNPTD-TNMGKGEHTYIDRLTCK 131
            +F  P   GLP+DYCL Y+      +     + G DCG PAA ++C  QG  +  + + V YYS  AT  LGD AV+  D T  GKG HT+   +TC+
Sbjct:   99 RFIMPKFRGLPVDYCLRYQHGSVRRE-----RRGIDCGVPAASQYCRDQGMDDSID-YVVTYYSSQATSTLGDGAVHAADPTGDGKGRHTWFTSITCR 190
The following BLAST results are available for this feature:
BLAST of NO12G02900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29590.17.100e-1040.82hypothetical protein Naga_100006g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02900NO12G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02900.1NO12G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02900.1.cds1NO12G02900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02900.1 ID=NO12G02900.1|Name=NO12G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
ATGGCATATCGCACATTCCACTTTCTACTTGTCGGCTTGGCCGTCGTGGG
CAGCAGCTTGGATTCGTCGTCTCTGCACTTGTCTTTCCGCAAGCTCAGCC
AATTCCAAGGCCCGACCGTTGATGGGCTACCTCTCGATTATTGCCTTCAT
TACGAGCTCGCGCATTACGGCCCAGACAATTCTTTGACTGCAAAGCATGG
GCACGATTGTGGGAAGCCCGCCGCGGACGAGTTTTGTATAAGACAAGGAT
ACAAGGAAGGGAGTGAGTGGTTTTCGGTTATGTACTATTCAAGGGGTGCG
ACCTACGTCTTGGGAGATGAGGCTGTGAACCCCACGGACACGAACATGGG
AAAAGGAGAGCATACGTACATTGATAGGTTGACATGCAAGGAGAAGAAGG
AAAGGTAA
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protein sequence of NO12G02900.1

>NO12G02900.1-protein ID=NO12G02900.1-protein|Name=NO12G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MAYRTFHFLLVGLAVVGSSLDSSSLHLSFRKLSQFQGPTVDGLPLDYCLH
YELAHYGPDNSLTAKHGHDCGKPAADEFCIRQGYKEGSEWFSVMYYSRGA
TYVLGDEAVNPTDTNMGKGEHTYIDRLTCKEKKER*
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mRNA from alignment at chr12:804270..804677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02900.1 ID=NO12G02900.1|Name=NO12G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=408bp|location=Sequence derived from alignment at chr12:804270..804677+ (Nannochloropsis oceanica)
ATGGCATATCGCACATTCCACTTTCTACTTGTCGGCTTGGCCGTCGTGGG
CAGCAGCTTGGATTCGTCGTCTCTGCACTTGTCTTTCCGCAAGCTCAGCC
AATTCCAAGGCCCGACCGTTGATGGGCTACCTCTCGATTATTGCCTTCAT
TACGAGCTCGCGCATTACGGCCCAGACAATTCTTTGACTGCAAAGCATGG
GCACGATTGTGGGAAGCCCGCCGCGGACGAGTTTTGTATAAGACAAGGAT
ACAAGGAAGGGAGTGAGTGGTTTTCGGTTATGTACTATTCAAGGGGTGCG
ACCTACGTCTTGGGAGATGAGGCTGTGAACCCCACGGACACGAACATGGG
AAAAGGAGAGCATACGTACATTGATAGGTTGACATGCAAGGAGAAGAAGG
AAAGGTAA
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Coding sequence (CDS) from alignment at chr12:804270..804677+

>NO12G02900.1 ID=NO12G02900.1|Name=NO12G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at chr12:804270..804677+ (Nannochloropsis oceanica)
ATGGCATATCGCACATTCCACTTTCTACTTGTCGGCTTGGCCGTCGTGGG
CAGCAGCTTGGATTCGTCGTCTCTGCACTTGTCTTTCCGCAAGCTCAGCC
AATTCCAAGGCCCGACCGTTGATGGGCTACCTCTCGATTATTGCCTTCAT
TACGAGCTCGCGCATTACGGCCCAGACAATTCTTTGACTGCAAAGCATGG
GCACGATTGTGGGAAGCCCGCCGCGGACGAGTTTTGTATAAGACAAGGAT
ACAAGGAAGGGAGTGAGTGGTTTTCGGTTATGTACTATTCAAGGGGTGCG
ACCTACGTCTTGGGAGATGAGGCTGTGAACCCCACGGACACGAACATGGG
AAAAGGAGAGCATACGTACATTGATAGGTTGACATGCAAGGAGAAGAAGG
AAAGGTAA
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Synonyms
Publications