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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:785153..787552 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02810.1 vs.
Match: EWM25751.1 (Conserved oligomeric Golgi complex, subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 543.1 bits (1398), Expect = 9.500e-151 Identity = 333/566 (58.83%), Postives = 386/566 (68.20%), Query Frame = 0
Query: 1 MDELALVIQHTESYDRFVRYLAAEAKKTRSSSSSSSIQESGTEENKEMVVLPAATDLNGAIAEVSGPFAVLEHHLMRSSIHKALEIDELPPLAPLTCHQGG--LQGSGIAAASAAGSGREEEVYGPGAVGTGSGGAPQTSSCVDDTFYVVRRCARRALVTGHAGTASAIVNYINSTLLDELMPVLSAKVRSLREMPLPVGLNPATGNAAAPSNSSGGGGRKAGAAIVAAKQHWSRVKGGFEAGLETAQQLTAVAAGSLMGG-AGIGLVGGGAGTITYYPATEAKLALDRLVMLNNLAACAVYTIKLQQELMAEVPSIFQDDPSTDQLMVCLGEMSETSRQFEQACEEGLQHVGALIKPKIRGFLQDALGVQSHEGGG-----GEGGGRGWGRVRQRLSDQGFES---------------------LKMALVD------------YLVKRLEYLLMRKSFTQLGGLQFDKDLRCLLAFFPSGGEDG-----GRKGGRGGMRERFARLMQMNQLLNLDVPTDIVDVFGGPLSKLTSEEALNVMKLRVDWEETEIGRAQQHLL-TASSG 520
MD LALVIQHTESYDRF+R++AAE I E+G + VLPA TDLNGA+AEV+GPFA+LE ++MR+SI KAL+IDELP LAPL+ Q G L SG A A G +++ + TG G +P TSS VDD+FYV+RRCARRALVTGHAGTASAI+NYIN L DELM VLSAKVRSLRE+PLP+GL PA + AP AG A+VA KQHWS+VK G AGLETAQQLTA AAGSLMGG AG+GL GGG G +T YP EAK ALDRLVMLNNL+ACA YT+KLQQELMAEVPSIFQDDP T QLM CL +MS T++ FEQ +EGLQHV ALIKPK+R FLQDALGV G G G+GG RG +V L + F + + + L Y+ KRLEYLLMR FTQLG LQ DKDLRCL+AFFPS G G++ GR +R+ FARLMQM+ LLNLDVPTDIVDVFGG KLT EEALN+M+LR DWEE EI +AQ+HLL T S+G
Sbjct: 416 MDALALVIQHTESYDRFLRHVAAE------------ILETGRDLGAP--VLPAVTDLNGAVAEVAGPFALLEDYVMRASIAKALQIDELPALAPLSLVQAGTSLVASG---AGIASIGEGDDL----LLSTGRGDSPLTSSAVDDSFYVLRRCARRALVTGHAGTASAIINYINGALSDELMSVLSAKVRSLRELPLPIGLLPAASSLGAP---------VAGTAVVAVKQHWSKVKEGIGAGLETAQQLTA-AAGSLMGGAAGVGLGGGGLGAVTCYPYEEAKNALDRLVMLNNLSACARYTLKLQQELMAEVPSIFQDDPPTQQLMACLQDMSVTAKHFEQTVDEGLQHVAALIKPKLRSFLQDALGVAQAVGKGQGGDAGQGGARGGSKVSYELDEDEFAANEAADPFMNRFLEFLGGLLGPISLRLTGRNFSVLKMSVVAYMAKRLEYLLMRLPFTQLGALQLDKDLRCLIAFFPSSTGYGDYSETGQESGR--VRDCFARLMQMSHLLNLDVPTDIVDVFGGNSMKLTVEEALNIMRLRTDWEEVEICKAQEHLLMTLSNG 948
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02810.1 ID=NO12G02810.1|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp ATGGATGAGCTAGCATTGGTGATTCAGCACACCGAGAGCTATGACCGTTT CGTGCGGTACCTTGCTGCGGAAGCTAAAAAGACGAGGAGTAGCAGTAGCA GTAGCAGCATTCAGGAATCTGGGACGGAAGAGAACAAAGAGATGGTGGTC TTGCCTGCGGCGACGGATCTGAATGGCGCGATTGCTGAGGTGTCGGGTCC GTTCGCGGTGTTGGAGCACCATTTGATGCGGTCCTCGATTCACAAGGCCC TGGAGATAGACGAGCTTCCCCCACTTGCTCCCCTTACATGCCACCAAGGC GGGCTCCAAGGAAGCGGGATTGCGGCCGCGTCCGCTGCTGGTTCTGGGAG AGAGGAGGAGGTGTACGGGCCGGGGGCGGTGGGGACAGGTAGTGGTGGGG CCCCTCAAACGAGCAGTTGCGTGGATGACACTTTTTACGTGGTGAGACGG TGTGCCCGACGAGCGCTGGTGACGGGGCATGCAGGCACGGCCTCGGCGAT TGTTAACTATATCAATAGTACGTTGCTGGATGAGTTGATGCCGGTCCTGA GTGCCAAGGTGCGGAGTCTTAGAGAGATGCCGTTGCCTGTAGGTCTGAAC CCTGCAACAGGTAATGCTGCTGCTCCTAGCAACAGCAGTGGTGGGGGTGG CCGAAAGGCGGGTGCTGCCATCGTAGCAGCCAAGCAGCATTGGAGCAGGG TCAAGGGAGGGTTTGAAGCGGGGCTGGAGACGGCGCAGCAGCTGACTGCT GTCGCTGCTGGTTCTCTCATGGGAGGCGCAGGGATCGGATTGGTGGGAGG AGGGGCGGGAACGATCACATATTACCCTGCAACAGAAGCTAAGTTGGCCT TGGATCGGCTGGTCATGTTGAACAACCTGGCAGCGTGTGCGGTGTATACG ATAAAGCTGCAACAGGAGCTGATGGCGGAGGTACCCTCGATTTTTCAGGA TGACCCGTCCACGGACCAGTTGATGGTGTGTCTGGGGGAGATGAGTGAGA CGAGTCGACAGTTTGAGCAGGCGTGTGAGGAGGGGTTACAGCATGTCGGG GCGTTGATTAAGCCGAAGATCAGAGGGTTTTTGCAGGATGCGTTGGGGGT ACAAAGTCACGAGGGAGGAGGAGGAGAGGGAGGGGGGAGGGGATGGGGGA GAGTAAGGCAGCGATTGAGTGATCAGGGATTTGAGAGTTTGAAGATGGCG CTGGTTGATTATTTGGTGAAGAGGTTGGAGTACTTATTGATGCGAAAATC CTTCACGCAATTAGGGGGATTGCAGTTTGATAAGGATTTGAGATGTTTGT TGGCGTTTTTCCCCTCGGGGGGTGAGGATGGGGGGAGAAAGGGAGGGAGG GGGGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGCTGTT GAACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCTTTGA GCAAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGTGGAT TGGGAAGAGACGGAGATAGGGAGGGCGCAGCAGCATTTGTTAACGGCCTC GTCGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAGGGGAAGATAG CAAAAGTTGAGAATGTCGATGTGGGAAAAGGACATTAATCAAGAATTGGA TGATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCACTTA CTATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAAATCC ACGGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGCACGG CAAAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAGAACA CAACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATCGTCC TGAAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACCACAC AACAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACCAACG CGACAGGTGGTCTAGAGAGCCAAACCTGTCGTCAACCCTCCCACCCTCCA CCAAAGGGGGGGACCGCCCTATCCATATGGTCACTGCGCACACAGCCTCG ATATGGGCAGGATTGCGCGTTGTGGGCTTCCCCCGATCGTTCAGGTCCCC AGGCCGGCTGACGCATCGGCCCTCACACGATTCTTATCTCATATGCCGTC AGTCGTTGGAGTCGACTCGACGCCATATCCTTGACCATAACTTGAATGAA ACAATTAAGGAGATCGGCTCGCTTCTGGCTAAAATTTAATATGACG back to topprotein sequence of NO12G02810.1 >NO12G02810.1-protein ID=NO12G02810.1-protein|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp MDELALVIQHTESYDRFVRYLAAEAKKTRSSSSSSSIQESGTEENKEMVV LPAATDLNGAIAEVSGPFAVLEHHLMRSSIHKALEIDELPPLAPLTCHQG GLQGSGIAAASAAGSGREEEVYGPGAVGTGSGGAPQTSSCVDDTFYVVRR CARRALVTGHAGTASAIVNYINSTLLDELMPVLSAKVRSLREMPLPVGLN PATGNAAAPSNSSGGGGRKAGAAIVAAKQHWSRVKGGFEAGLETAQQLTA VAAGSLMGGAGIGLVGGGAGTITYYPATEAKLALDRLVMLNNLAACAVYT IKLQQELMAEVPSIFQDDPSTDQLMVCLGEMSETSRQFEQACEEGLQHVG ALIKPKIRGFLQDALGVQSHEGGGGEGGGRGWGRVRQRLSDQGFESLKMA LVDYLVKRLEYLLMRKSFTQLGGLQFDKDLRCLLAFFPSGGEDGGRKGGR GGMRERFARLMQMNQLLNLDVPTDIVDVFGGPLSKLTSEEALNVMKLRVD WEETEIGRAQQHLLTASSGAGGTGDGGFL* back to topmRNA from alignment at chr12:785153..787552- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02810.1 ID=NO12G02810.1|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2400bp|location=Sequence derived from alignment at chr12:785153..787552- (Nannochloropsis oceanica) ATGGATGAGCTAGCATTGGTGATTCAGCACACCGAGAGCTATGACCGTTT
CGTGCGGTACCTTGCTGCGGAAGCTAAAAAGACGAGGAGTAGCAGTAGCA
GTAGCAGCATTCAGGAATCTGGGACGGAAGAGAACAAAGAGATGGTGGTC
TTGCCTGCGGCGACGGATCTGAATGGCGCGATTGCTGAGGTGTCGGGTCC
GTTCGCGGTGTTGGAGCACCATTTGATGCGGTCCTCGATTCACAAGGCCC
TGGAGATAGACGAGCTTCCCCCACTTGCTCCCCTTACATGCCACCAAGGC
GGGCTCCAAGGAAGCGGGATTGCGGCCGCGTCCGCTGCTGGTTCTGGGAG
AGAGGAGGAGGTGTACGGGCCGGGGGCGGTGGGGACAGGTAGTGGTGGGG
CCCCTCAAACGAGCAGTTGCGTGGATGACACTTTTTACGTGGTGAGACGG
TGTGCCCGACGAGCGCTGGTGACGGGGCATGCAGGCACGGCCTCGGCGAT
TGTTAACTATATCAATAGTACGTTGCTGGATGAGTTGATGCCGGTCCTGA
GTGCCAAGGTGCGGAGTCTTAGAGAGATGCCGTTGCCTGTAGGTCTGAAC
CCTGCAACAGGTAATGCTGCTGCTCCTAGCAACAGCAGTGGTGGGGGTGG
CCGAAAGGCGGGTGCTGCCATCGTAGCAGCCAAGCAGCATTGGAGCAGGG
TCAAGGGAGGGTTTGAAGCGGGGCTGGAGACGGCGCAGCAGCTGACTGCT
GTCGCTGCTGGTTCTCTCATGGGAGGCGCAGGGATCGGATTGGTGGGAGG
AGGGGCGGGAACGATCACATATTACCCTGCAACAGAAGCTAAGTTGGCCT
TGGATCGGCTGGTCATGTTGAACAACCTGGCAGCGTGTGCGGTGTATACG
ATAAAGCTGCAACAGGAGCTGATGGCGGAGGTACCCTCGATTTTTCAGGA
TGACCCGTCCACGGACCAGTTGATGGTGTGTCTGGGGGAGATGAGTGAGA
CGAGTCGACAGTTTGAGCAGGCGTGTGAGGAGGGGTTACAGCATGTCGGG
GCGTTGATTAAGCCGAAGATCAGAGGGTTTTTGCAGGATGCGTTGGGGGT
ACAAAGTCACGAGGGAGGAGGAGGAGAGGGAGGGGGGAGGGGATGGGGGA
GAGTAAGGTGTCTTATGAGTTGAACGAGGAGGACTTTGCCGGCAATGAAG
CGGTGGATCCATGGGTCCATCGCTTCGTGGAGTTTTTGGGGGGCGTACTG
GGACCTATTAGGCAGCGATTGAGTGATCAGGGATTTGAGAGTTTGAAGAT
GGCGCTGGTTGATTATTTGGTGAAGAGGTTGGAGTACTTATTGATGCGAA
AATCCTTCACGCAATTAGGGGGATTGCAGTTTGATAAGGATTTGAGATGT
TTGTTGGCGTTTTTCCCCTCGGGGGGTGAGGATGGGGGGAGAAAGGGAGG
GAGGGGGGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGC
TGTTGAACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCT
TTGAGCAAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGT
GGATTGGGAAGAGACGGAGATAGGGAGGGCGCAGCAGCATTTGTTAACGG
CCTCGTCGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAGGGGAAG
ATAGCAAAAGTTGAGAATGTCGATGTGGGAAAAGGACATTAATCAAGAAT
TGGATGATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCA
CTTACTATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAA
ATCCACGGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGC
ACGGCAAAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAG
AACACAACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATC
GTCCTGAAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACC
ACACAACAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACC
AACGCGACAGGTGGTCTAGAGAGCCAAACCTGTCGTCAACCCTCCCACCC
TCCACCAAAGGGGGGGACCGCCCTATCCATATGGTCACTGCGCACACAGC
CTCGATATGGGCAGGATTGCGCGTTGTGGGCTTCCCCCGATCGTTCAGGT
CCCCAGGCCGGCTGACGCATCGGCCCTCACACGATTCTTATCTCATATGC
CGTCAGTCGTTGGAGTCGACTCGACGCCATATCCTTGACCATAACTTGAA
TGAAACAATTAAGGAGATCGGCTCGCTTCTGGCTAAAATTTAATATGACG
back to topCoding sequence (CDS) from alignment at chr12:785153..787552- >NO12G02810.1 ID=NO12G02810.1|Name=NO12G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr12:785153..787552- (Nannochloropsis oceanica) ATGGATGAGCTAGCATTGGTGATTCAGCACACCGAGAGCTATGACCGTTT CGTGCGGTACCTTGCTGCGGAAGCTAAAAAGACGAGGAGTAGCAGTAGCA GTAGCAGCATTCAGGAATCTGGGACGGAAGAGAACAAAGAGATGGTGGTC TTGCCTGCGGCGACGGATCTGAATGGCGCGATTGCTGAGGTGTCGGGTCC GTTCGCGGTGTTGGAGCACCATTTGATGCGGTCCTCGATTCACAAGGCCC TGGAGATAGACGAGCTTCCCCCACTTGCTCCCCTTACATGCCACCAAGGC GGGCTCCAAGGAAGCGGGATTGCGGCCGCGTCCGCTGCTGGTTCTGGGAG AGAGGAGGAGGTGTACGGGCCGGGGGCGGTGGGGACAGGTAGTGGTGGGG CCCCTCAAACGAGCAGTTGCGTGGATGACACTTTTTACGTGGTGAGACGG TGTGCCCGACGAGCGCTGGTGACGGGGCATGCAGGCACGGCCTCGGCGAT TGTTAACTATATCAATAGTACGTTGCTGGATGAGTTGATGCCGGTCCTGA GTGCCAAGGTGCGGAGTCTTAGAGAGATGCCGTTGCCTGTAGGTCTGAAC CCTGCAACAGGTAATGCTGCTGCTCCTAGCAACAGCAGTGGTGGGGGTGG CCGAAAGGCGGGTGCTGCCATCGTAGCAGCCAAGCAGCATTGGAGCAGGG TCAAGGGAGGGTTTGAAGCGGGGCTGGAGACGGCGCAGCAGCTGACTGCT GTCGCTGCTGGTTCTCTCATGGGAGGCGCAGGGATCGGATTGGTGGGAGG AGGGGCGGGAACGATCACATATTACCCTGCAACAGAAGCTAAGTTGGCCT TGGATCGGCTGGTCATGTTGAACAACCTGGCAGCGTGTGCGGTGTATACG ATAAAGCTGCAACAGGAGCTGATGGCGGAGGTACCCTCGATTTTTCAGGA TGACCCGTCCACGGACCAGTTGATGGTGTGTCTGGGGGAGATGAGTGAGA CGAGTCGACAGTTTGAGCAGGCGTGTGAGGAGGGGTTACAGCATGTCGGG GCGTTGATTAAGCCGAAGATCAGAGGGTTTTTGCAGGATGCGTTGGGGGT ACAAAGTCACGAGGGAGGAGGAGGAGAGGGAGGGGGGAGGGGATGGGGGA GAGTAAGGCAGCGATTGAGTGATCAGGGATTTGAGAGTTTGAAGATGGCG CTGGTTGATTATTTGGTGAAGAGGTTGGAGTACTTATTGATGCGAAAATC CTTCACGCAATTAGGGGGATTGCAGTTTGATAAGGATTTGAGATGTTTGT TGGCGTTTTTCCCCTCGGGGGGTGAGGATGGGGGGAGAAAGGGAGGGAGG GGGGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGCTGTT GAACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCTTTGA GCAAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGTGGAT TGGGAAGAGACGGAGATAGGGAGGGCGCAGCAGCATTTGTTAACGGCCTC GTCGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAG back to top
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