NO12G02560.1, NO12G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02560.1
Unique NameNO12G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr12:727767..728528 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:727767..728528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02560.1 vs.
Match: EWM25780.1 (phosphatidylinositol 4-kinase [Nannochloropsis gaditana])

HSP 1 Score: 477.2 bits (1227), Expect = 3.100e-131
Identity = 228/253 (90.12%), Postives = 243/253 (96.05%), Query Frame = 0 
Query:    1 MFIVKAGDDLRQEQVAMQLITLVREIFKEEGLDLWLRPYGIVCVGDQAGLIEAVADAKSIDHVKKRAPYFTDLREYYERIYGGPYSRTFREAQRNFMRSLAGYCICTYLLQVKDRHNANILIDKQGHLIHIDFGFMLGASPGSISFESAPFKLTKEYVDLMGGQGGQGWLEFRSLVVRGFDVLNRPRHRRRLLDMMAVSIFEVPSKAALLDSFDKRLMHASFPPNALALVDESYDNYRTKMYDSYQKRRNGIW 254
            MFIVKAGDDLRQEQVAMQLITLVREIFKEEGL+LWLRPY IVCVGDQAGLIEAVADAKSIDH+KKRAP+FT L+EYYERIYGGPYSRTFREAQRNFMRSLAGYC+CTYLLQVKDRHNANILIDKQGHLIHIDFGFMLGASPGSISFESAPFKLTKEYV+L+GGQ    W EFRS+VVRGF VLN+PRHRRRLLD+MAVSIFEVP KAA+LDSFDKRL++AS+ PNALALVDES+DNYRTKMYDSYQKRRNGIW
Sbjct:  486 MFIVKAGDDLRQEQVAMQLITLVREIFKEEGLELWLRPYDIVCVGDQAGLIEAVADAKSIDHIKKRAPHFTSLKEYYERIYGGPYSRTFREAQRNFMRSLAGYCVCTYLLQVKDRHNANILIDKQGHLIHIDFGFMLGASPGSISFESAPFKLTKEYVELLGGQEDMNWQEFRSMVVRGFGVLNQPRHRRRLLDLMAVSIFEVPGKAAILDSFDKRLVYASYAPNALALVDESFDNYRTKMYDSYQKRRNGIW 738
The following BLAST results are available for this feature:
BLAST of NO12G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25780.13.100e-13190.12phosphatidylinositol 4-kinase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02560NO12G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02560.1NO12G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02560.1.cds1NO12G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02560.1 ID=NO12G02560.1|Name=NO12G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGTTCATTGTCAAGGCTGGGGATGACTTGAGACAGGAGCAAGTGGCCAT
GCAACTTATTACGTTGGTCAGGGAAATATTTAAGGAGGAAGGATTGGATT
TATGGTTGAGGCCTTATGGAATCGTGTGTGTTGGGGACCAGGCGGGATTG
ATTGAGGCGGTTGCGGATGCGAAGAGCATCGATCATGTGAAGAAGCGGGC
ACCATATTTCACGGATTTGAGGGAGTATTACGAGCGGATATATGGGGGTC
CATATTCGAGGACATTCAGGGAAGCGCAAAGGAATTTCATGAGGAGTTTG
GCCGGCTATTGTATTTGTACGTATTTGCTTCAGGTCAAGGACAGGCACAA
TGCGAATATTCTGATTGACAAACAGGGACATTTGATCCACATTGACTTTG
GATTTATGTTAGGGGCGAGCCCCGGGTCTATCTCGTTTGAAAGTGCGCCA
TTTAAGCTGACGAAGGAGTATGTAGATCTCATGGGCGGGCAGGGGGGACA
GGGATGGTTAGAATTTAGGTCTTTAGTGGTGAGGGGTTTCGATGTGTTGA
ACCGCCCCAGGCATCGACGGAGATTGCTTGATATGATGGCGGTGTCAATA
TTCGAGGTACCAAGCAAGGCAGCGCTCCTGGATAGTTTCGATAAGAGGCT
GATGCATGCGAGTTTCCCACCGAATGCCTTGGCGTTGGTGGATGAGAGCT
ATGATAATTACCGGACAAAAATGTACGATTCGTATCAAAAGCGACGGAAT
GGGATTTGGTGA
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protein sequence of NO12G02560.1

>NO12G02560.1-protein ID=NO12G02560.1-protein|Name=NO12G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MFIVKAGDDLRQEQVAMQLITLVREIFKEEGLDLWLRPYGIVCVGDQAGL
IEAVADAKSIDHVKKRAPYFTDLREYYERIYGGPYSRTFREAQRNFMRSL
AGYCICTYLLQVKDRHNANILIDKQGHLIHIDFGFMLGASPGSISFESAP
FKLTKEYVDLMGGQGGQGWLEFRSLVVRGFDVLNRPRHRRRLLDMMAVSI
FEVPSKAALLDSFDKRLMHASFPPNALALVDESYDNYRTKMYDSYQKRRN
GIW*
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mRNA from alignment at chr12:727767..728528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02560.1 ID=NO12G02560.1|Name=NO12G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp|location=Sequence derived from alignment at chr12:727767..728528+ (Nannochloropsis oceanica)
ATGTTCATTGTCAAGGCTGGGGATGACTTGAGACAGGAGCAAGTGGCCAT
GCAACTTATTACGTTGGTCAGGGAAATATTTAAGGAGGAAGGATTGGATT
TATGGTTGAGGCCTTATGGAATCGTGTGTGTTGGGGACCAGGCGGGATTG
ATTGAGGCGGTTGCGGATGCGAAGAGCATCGATCATGTGAAGAAGCGGGC
ACCATATTTCACGGATTTGAGGGAGTATTACGAGCGGATATATGGGGGTC
CATATTCGAGGACATTCAGGGAAGCGCAAAGGAATTTCATGAGGAGTTTG
GCCGGCTATTGTATTTGTACGTATTTGCTTCAGGTCAAGGACAGGCACAA
TGCGAATATTCTGATTGACAAACAGGGACATTTGATCCACATTGACTTTG
GATTTATGTTAGGGGCGAGCCCCGGGTCTATCTCGTTTGAAAGTGCGCCA
TTTAAGCTGACGAAGGAGTATGTAGATCTCATGGGCGGGCAGGGGGGACA
GGGATGGTTAGAATTTAGGTCTTTAGTGGTGAGGGGTTTCGATGTGTTGA
ACCGCCCCAGGCATCGACGGAGATTGCTTGATATGATGGCGGTGTCAATA
TTCGAGGTACCAAGCAAGGCAGCGCTCCTGGATAGTTTCGATAAGAGGCT
GATGCATGCGAGTTTCCCACCGAATGCCTTGGCGTTGGTGGATGAGAGCT
ATGATAATTACCGGACAAAAATGTACGATTCGTATCAAAAGCGACGGAAT
GGGATTTGGTGA
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Coding sequence (CDS) from alignment at chr12:727767..728528+

>NO12G02560.1 ID=NO12G02560.1|Name=NO12G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr12:727767..728528+ (Nannochloropsis oceanica)
ATGTTCATTGTCAAGGCTGGGGATGACTTGAGACAGGAGCAAGTGGCCAT
GCAACTTATTACGTTGGTCAGGGAAATATTTAAGGAGGAAGGATTGGATT
TATGGTTGAGGCCTTATGGAATCGTGTGTGTTGGGGACCAGGCGGGATTG
ATTGAGGCGGTTGCGGATGCGAAGAGCATCGATCATGTGAAGAAGCGGGC
ACCATATTTCACGGATTTGAGGGAGTATTACGAGCGGATATATGGGGGTC
CATATTCGAGGACATTCAGGGAAGCGCAAAGGAATTTCATGAGGAGTTTG
GCCGGCTATTGTATTTGTACGTATTTGCTTCAGGTCAAGGACAGGCACAA
TGCGAATATTCTGATTGACAAACAGGGACATTTGATCCACATTGACTTTG
GATTTATGTTAGGGGCGAGCCCCGGGTCTATCTCGTTTGAAAGTGCGCCA
TTTAAGCTGACGAAGGAGTATGTAGATCTCATGGGCGGGCAGGGGGGACA
GGGATGGTTAGAATTTAGGTCTTTAGTGGTGAGGGGTTTCGATGTGTTGA
ACCGCCCCAGGCATCGACGGAGATTGCTTGATATGATGGCGGTGTCAATA
TTCGAGGTACCAAGCAAGGCAGCGCTCCTGGATAGTTTCGATAAGAGGCT
GATGCATGCGAGTTTCCCACCGAATGCCTTGGCGTTGGTGGATGAGAGCT
ATGATAATTACCGGACAAAAATGTACGATTCGTATCAAAAGCGACGGAAT
GGGATTTGGTGA
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Synonyms
Publications