NO12G02170.1, NO12G02170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02170.1
Unique NameNO12G02170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr12:623645..625637 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:623645..625637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02170.1 vs.
Match: EWM25855.1 (autophagy protein 16 [Nannochloropsis gaditana])

HSP 1 Score: 744.2 bits (1920), Expect = 3.100e-211
Identity = 394/588 (67.01%), Postives = 453/588 (77.04%), Query Frame = 0 
Query:   12 TSIHWRIHILRLLQQQNEEETQPFRGIIQSYTQIARQNQALKLHLEHLEKELVILRHGAAEISGSSVGSGAGTGEGKEDQVRKLHRKVLRLQEELTDKFRLEVQGTTSQLQMSKEIQDLFQKCQAARAESEASKAEVEGLRAREPAFVAQAAMATTDLEIVQGELGRARARLDAVEKERTRLRAQNEELIQRIVGEKSRNADEMNRMTELVEQMRVQLRAQGVQAGSQGGVNSQKADLAMSLQSPGRDGLPSRCYQQFKAHATDVNDVAYNENGAWLATAGGDGYVRVWEERTGRLKTTLHGADVMLGLDFRGDFVVGGSSDHTCKLWSLASERVHRTFVGHSGNVYAVKMVAGDGRAILTGGADRTIRLWDVGRVNCKQILRSGSTCNGLDIGMDGHVPVSAHQDGGLRVWDLRAGNPSMIVRAFETQATSVQYGQNFTVLANSRDNVIKIVDTRTFETLHVLRHEDYRTFLNWSRACFSPSSAYVAAGSANGQFFIWDAVTGDVKSTLN--ADAMPSLSGSGGRMGIR--NNSFSSSHDGGGSSS-----SSSASGVVESGRGITNCAWKGQQLATCTKGGDVCLW 591
            T+ HWR  +L  L+QQN+ E +PFRGII SYT +ARQNQ LK H++H EKELV LRH A E   S    GAG    K++Q RKL  KV RLQEELTDK RLEVQGTTSQL MSKEIQDLFQK Q +RAE+E  + EV+G RARE    AQA MAT DLEIVQ EL R RARL+ VEKE   +R QNEEL++R+VGEKS NA+EMNRMTELVE+MR QL+A+ ++  S   V +     A+       D LPS C QQF+AHA DVND+ Y + G WLATAGGDG VRVWE  +GRLK TLHG DVMLGLDFRGDFVVGGSSDHTCKLWSLAS R+HRTFVGHSGNVYAVK++AGD RA+LTGGADRTIRLWDVGR +C+QILRSGSTCNGLDIGMDGH PVSAHQDGGLR WDLRAGNP+MIVRAFETQATSVQYGQNFT LANSRDN +KI+DTRTFETLHVLRHEDYRTFLNWSRACFSPSS+YVAAGSA GQ F+W+  +G++KS L+   D+  S S S     +R    S S+S D   +SS     S+S +G    G GI +CAWK  +L+ CT+ G+VC+W
Sbjct:   13 TAAHWRTSVLNALKQQNDVEVEPFRGIILSYTDLARQNQVLKAHVDHQEKELVTLRHEALEQRDSKGQGGAGACGAKDEQTRKLQSKVQRLQEELTDKLRLEVQGTTSQLNMSKEIQDLFQKWQLSRAEAEKLRTEVDGFRAREATLEAQAGMATRDLEIVQEELKRVRARLNTVEKEYLDVRRQNEELVRRMVGEKSHNAEEMNRMTELVERMRAQLKARNLEIESTQAVAADVEIEAVPSSGLRTDELPSHCNQQFRAHAADVNDLVYCDTGQWLATAGGDGKVRVWEAGSGRLKATLHGQDVMLGLDFRGDFVVGGSSDHTCKLWSLASGRLHRTFVGHSGNVYAVKLIAGDLRAVLTGGADRTIRLWDVGRASCRQILRSGSTCNGLDIGMDGHAPVSAHQDGGLRFWDLRAGNPTMIVRAFETQATSVQYGQNFTALANSRDNALKIIDTRTFETLHVLRHEDYRTFLNWSRACFSPSSSYVAAGSATGQLFVWETASGEMKSILSHAPDSRHSFSSSPEHDELRCQGMSLSASGDRIRTSSEALDGSTSGAGQRGGGGGIISCAWKASRLSACTRSGNVCIW 600
The following BLAST results are available for this feature:
BLAST of NO12G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25855.13.100e-21167.01autophagy protein 16 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02170NO12G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02170.1NO12G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02170.1.cds1NO12G02170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02170.1.cds2NO12G02170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02170.1 ID=NO12G02170.1|Name=NO12G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
ATGGTGGTAGCACCCGCCTCATCCTTGAGGTCCACCTCCATACATTGGAG
GATACACATCTTGCGCCTCCTCCAGCAGCAGAACGAGGAGGAGACGCAGC
CTTTTCGTGGCATCATTCAGAGCTACACACAAATCGCCCGGCAGAACCAG
GCCCTTAAACTTCATTTGGAGCACCTAGAAAAGGAGCTAGTCATTTTGCG
ACATGGAGCTGCAGAAATCAGCGGGAGCAGTGTAGGAAGCGGGGCCGGAA
CGGGGGAAGGTAAGGAGGATCAAGTTCGAAAACTGCATCGCAAAGTCCTG
CGCCTCCAGGAAGAACTTACGGACAAATTCCGTCTCGAGGTGCAGGGAAC
GACGTCTCAGCTGCAAATGAGCAAGGAGATCCAGGATTTGTTTCAAAAAT
GTCAAGCGGCGCGGGCGGAGTCTGAGGCTTCAAAAGCTGAGGTGGAGGGA
CTGCGGGCGCGGGAGCCGGCATTCGTAGCACAGGCAGCCATGGCGACAAC
AGATCTGGAGATCGTGCAAGGCGAGTTAGGCCGCGCGCGGGCGCGATTAG
ATGCTGTGGAAAAGGAACGCACGAGGCTACGTGCCCAGAACGAGGAGTTG
ATTCAGCGGATAGTAGGGGAGAAGTCGCGCAATGCCGATGAAATGAACCG
AATGACCGAGCTCGTGGAGCAGATGCGGGTCCAGCTCAGAGCACAGGGCG
TACAGGCCGGAAGTCAGGGGGGTGTAAATAGTCAGAAAGCGGACTTGGCG
ATGTCTCTCCAGTCGCCGGGGAGAGATGGACTGCCTTCGCGGTGCTACCA
ACAATTTAAGGCACACGCCACGGACGTCAACGACGTGGCTTACAATGAGA
ATGGTGCCTGGCTGGCCACCGCGGGTGGAGACGGGTATGTTCGTGTGTGG
GAAGAAAGGACGGGTCGCCTGAAAACGACATTACATGGAGCGGATGTGAT
GCTGGGGTTGGATTTTCGGGGAGATTTTGTGGTGGGGGGAAGCAGCGACC
ACACCTGCAAGCTGTGGAGCCTGGCTTCCGAACGCGTGCATCGCACGTTT
GTTGGACATTCAGGTAACGTCTATGCAGTAAAAATGGTGGCGGGGGATGG
GCGTGCAATTCTAACTGGAGGTGCGGACCGAACTATCCGCTTGTGGGATG
TAGGGAGAGTTAATTGCAAACAGATTTTGCGGTCGGGCTCGACGTGTAAT
GGGCTGGATATAGGCATGGATGGCCATGTGCCCGTCTCAGCGCACCAGGA
TGGAGGTCTTCGTGTGTGGGATCTACGTGCTGGAAACCCTAGTATGATTG
TGCGGGCATTTGAGACGCAAGCAACCTCGGTGCAGTATGGGCAGAATTTT
ACGGTGCTTGCCAACTCTCGTGACAATGTCATTAAAATCGTTGACACGCG
GACGTTTGAGACCCTCCATGTTCTGCGCCATGAGGATTACCGAACCTTTC
TCAACTGGTCCCGGGCTTGTTTCTCCCCTTCTAGTGCCTACGTAGCTGCA
GGATCGGCTAATGGGCAGTTCTTCATCTGGGATGCCGTCACAGGTGATGT
GAAGTCTACCCTGAATGCCGACGCCATGCCATCTTTGAGCGGCAGTGGGG
GACGGATGGGTATAAGGAACAATTCGTTTTCCAGCTCGCATGATGGTGGT
GGCAGTAGTTCCAGTAGTAGTGCCAGTGGTGTGGTGGAGAGTGGAAGGGG
GATCACAAATTGTGCATGGAAAGGGCAGCAATTGGCGACGTGCACCAAGG
GCGGGGACGTATGTCTGTGGGGATGA
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protein sequence of NO12G02170.1

>NO12G02170.1-protein ID=NO12G02170.1-protein|Name=NO12G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MVVAPASSLRSTSIHWRIHILRLLQQQNEEETQPFRGIIQSYTQIARQNQ
ALKLHLEHLEKELVILRHGAAEISGSSVGSGAGTGEGKEDQVRKLHRKVL
RLQEELTDKFRLEVQGTTSQLQMSKEIQDLFQKCQAARAESEASKAEVEG
LRAREPAFVAQAAMATTDLEIVQGELGRARARLDAVEKERTRLRAQNEEL
IQRIVGEKSRNADEMNRMTELVEQMRVQLRAQGVQAGSQGGVNSQKADLA
MSLQSPGRDGLPSRCYQQFKAHATDVNDVAYNENGAWLATAGGDGYVRVW
EERTGRLKTTLHGADVMLGLDFRGDFVVGGSSDHTCKLWSLASERVHRTF
VGHSGNVYAVKMVAGDGRAILTGGADRTIRLWDVGRVNCKQILRSGSTCN
GLDIGMDGHVPVSAHQDGGLRVWDLRAGNPSMIVRAFETQATSVQYGQNF
TVLANSRDNVIKIVDTRTFETLHVLRHEDYRTFLNWSRACFSPSSAYVAA
GSANGQFFIWDAVTGDVKSTLNADAMPSLSGSGGRMGIRNNSFSSSHDGG
GSSSSSSASGVVESGRGITNCAWKGQQLATCTKGGDVCLWG*
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mRNA from alignment at chr12:623645..625637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02170.1 ID=NO12G02170.1|Name=NO12G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at chr12:623645..625637- (Nannochloropsis oceanica)
ATGGTGGTAGCACCCGCCTCATCCTTGAGGTCCACCTCCATACATTGGAG
GATACACATCTTGCGCCTCCTCCAGCAGCAGAACGAGGAGGAGACGCAGC
CTTTTCGTGGCATCATTCAGAGCTGTAAGTGTATGTATCCTCGGATTGCG
CTCTTGCTCCCTCCCTTCGAGCAATGAGAACCATTGACGTGAGGCTCCGT
CAATTTCCCTTGTTTTATTCGTGATTTCGGATGCATCAAGTATGACTGCA
TGCCTTGGAGCAGTCTCTTCAGCTCTGCGCAATAAAACTACCTCACAACA
CATAATGTTCCCCCATGTCCACTCACATACCTCAACGTCAGACACACAAA
TCGCCCGGCAGAACCAGGCCCTTAAACTTCATTTGGAGCACCTAGAAAAG
GAGCTAGTCATTTTGCGACATGGAGCTGCAGAAATCAGCGGGAGCAGTGT
AGGAAGCGGGGCCGGAACGGGGGAAGGTAAGGAGGATCAAGTTCGAAAAC
TGCATCGCAAAGTCCTGCGCCTCCAGGAAGAACTTACGGACAAATTCCGT
CTCGAGGTGCAGGGAACGACGTCTCAGCTGCAAATGAGCAAGGAGATCCA
GGATTTGTTTCAAAAATGTCAAGCGGCGCGGGCGGAGTCTGAGGCTTCAA
AAGCTGAGGTGGAGGGACTGCGGGCGCGGGAGCCGGCATTCGTAGCACAG
GCAGCCATGGCGACAACAGATCTGGAGATCGTGCAAGGCGAGTTAGGCCG
CGCGCGGGCGCGATTAGATGCTGTGGAAAAGGAACGCACGAGGCTACGTG
CCCAGAACGAGGAGTTGATTCAGCGGATAGTAGGGGAGAAGTCGCGCAAT
GCCGATGAAATGAACCGAATGACCGAGCTCGTGGAGCAGATGCGGGTCCA
GCTCAGAGCACAGGGCGTACAGGCCGGAAGTCAGGGGGGTGTAAATAGTC
AGAAAGCGGACTTGGCGATGTCTCTCCAGTCGCCGGGGAGAGATGGACTG
CCTTCGCGGTGCTACCAACAATTTAAGGCACACGCCACGGACGTCAACGA
CGTGGCTTACAATGAGAATGGTGCCTGGCTGGCCACCGCGGGTGGAGACG
GGTATGTTCGTGTGTGGGAAGAAAGGACGGGTCGCCTGAAAACGACATTA
CATGGAGCGGATGTGATGCTGGGGTTGGATTTTCGGGGAGATTTTGTGGT
GGGGGGAAGCAGCGACCACACCTGCAAGCTGTGGAGCCTGGCTTCCGAAC
GCGTGCATCGCACGTTTGTTGGACATTCAGGTAACGTCTATGCAGTAAAA
ATGGTGGCGGGGGATGGGCGTGCAATTCTAACTGGAGGTGCGGACCGAAC
TATCCGCTTGTGGGATGTAGGGAGAGTTAATTGCAAACAGATTTTGCGGT
CGGGCTCGACGTGTAATGGGCTGGATATAGGCATGGATGGCCATGTGCCC
GTCTCAGCGCACCAGGATGGAGGTCTTCGTGTGTGGGATCTACGTGCTGG
AAACCCTAGTATGATTGTGCGGGCATTTGAGACGCAAGCAACCTCGGTGC
AGTATGGGCAGAATTTTACGGTGCTTGCCAACTCTCGTGACAATGTCATT
AAAATCGTTGACACGCGGACGTTTGAGACCCTCCATGTTCTGCGCCATGA
GGATTACCGAACCTTTCTCAACTGGTCCCGGGCTTGTTTCTCCCCTTCTA
GTGCCTACGTAGCTGCAGGATCGGCTAATGGGCAGTTCTTCATCTGGGAT
GCCGTCACAGGTGATGTGAAGTCTACCCTGAATGCCGACGCCATGCCATC
TTTGAGCGGCAGTGGGGGACGGATGGGTATAAGGAACAATTCGTTTTCCA
GCTCGCATGATGGTGGTGGCAGTAGTTCCAGTAGTAGTGCCAGTGGTGTG
GTGGAGAGTGGAAGGGGGATCACAAATTGTGCATGGAAAGGGCAGCAATT
GGCGACGTGCACCAAGGGCGGGGACGTATGTCTGTGGGGATGA
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Coding sequence (CDS) from alignment at chr12:623645..625637-

>NO12G02170.1 ID=NO12G02170.1|Name=NO12G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr12:623645..625637- (Nannochloropsis oceanica)
ATGGTGGTAGCACCCGCCTCATCCTTGAGGTCCACCTCCATACATTGGAG
GATACACATCTTGCGCCTCCTCCAGCAGCAGAACGAGGAGGAGACGCAGC
CTTTTCGTGGCATCATTCAGAGCTACACACAAATCGCCCGGCAGAACCAG
GCCCTTAAACTTCATTTGGAGCACCTAGAAAAGGAGCTAGTCATTTTGCG
ACATGGAGCTGCAGAAATCAGCGGGAGCAGTGTAGGAAGCGGGGCCGGAA
CGGGGGAAGGTAAGGAGGATCAAGTTCGAAAACTGCATCGCAAAGTCCTG
CGCCTCCAGGAAGAACTTACGGACAAATTCCGTCTCGAGGTGCAGGGAAC
GACGTCTCAGCTGCAAATGAGCAAGGAGATCCAGGATTTGTTTCAAAAAT
GTCAAGCGGCGCGGGCGGAGTCTGAGGCTTCAAAAGCTGAGGTGGAGGGA
CTGCGGGCGCGGGAGCCGGCATTCGTAGCACAGGCAGCCATGGCGACAAC
AGATCTGGAGATCGTGCAAGGCGAGTTAGGCCGCGCGCGGGCGCGATTAG
ATGCTGTGGAAAAGGAACGCACGAGGCTACGTGCCCAGAACGAGGAGTTG
ATTCAGCGGATAGTAGGGGAGAAGTCGCGCAATGCCGATGAAATGAACCG
AATGACCGAGCTCGTGGAGCAGATGCGGGTCCAGCTCAGAGCACAGGGCG
TACAGGCCGGAAGTCAGGGGGGTGTAAATAGTCAGAAAGCGGACTTGGCG
ATGTCTCTCCAGTCGCCGGGGAGAGATGGACTGCCTTCGCGGTGCTACCA
ACAATTTAAGGCACACGCCACGGACGTCAACGACGTGGCTTACAATGAGA
ATGGTGCCTGGCTGGCCACCGCGGGTGGAGACGGGTATGTTCGTGTGTGG
GAAGAAAGGACGGGTCGCCTGAAAACGACATTACATGGAGCGGATGTGAT
GCTGGGGTTGGATTTTCGGGGAGATTTTGTGGTGGGGGGAAGCAGCGACC
ACACCTGCAAGCTGTGGAGCCTGGCTTCCGAACGCGTGCATCGCACGTTT
GTTGGACATTCAGGTAACGTCTATGCAGTAAAAATGGTGGCGGGGGATGG
GCGTGCAATTCTAACTGGAGGTGCGGACCGAACTATCCGCTTGTGGGATG
TAGGGAGAGTTAATTGCAAACAGATTTTGCGGTCGGGCTCGACGTGTAAT
GGGCTGGATATAGGCATGGATGGCCATGTGCCCGTCTCAGCGCACCAGGA
TGGAGGTCTTCGTGTGTGGGATCTACGTGCTGGAAACCCTAGTATGATTG
TGCGGGCATTTGAGACGCAAGCAACCTCGGTGCAGTATGGGCAGAATTTT
ACGGTGCTTGCCAACTCTCGTGACAATGTCATTAAAATCGTTGACACGCG
GACGTTTGAGACCCTCCATGTTCTGCGCCATGAGGATTACCGAACCTTTC
TCAACTGGTCCCGGGCTTGTTTCTCCCCTTCTAGTGCCTACGTAGCTGCA
GGATCGGCTAATGGGCAGTTCTTCATCTGGGATGCCGTCACAGGTGATGT
GAAGTCTACCCTGAATGCCGACGCCATGCCATCTTTGAGCGGCAGTGGGG
GACGGATGGGTATAAGGAACAATTCGTTTTCCAGCTCGCATGATGGTGGT
GGCAGTAGTTCCAGTAGTAGTGCCAGTGGTGTGGTGGAGAGTGGAAGGGG
GATCACAAATTGTGCATGGAAAGGGCAGCAATTGGCGACGTGCACCAAGG
GCGGGGACGTATGTCTGTGGGGATGA
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Synonyms
Publications