NO12G01860.1, NO12G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01860.1
Unique NameNO12G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr12:535569..537521 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:535569..537521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01860.1 vs.
Match: XP_005856121.1 (methyltransferase type 11 [Nannochloropsis gaditana CCMP526]; EKU20257.1 methyltransferase type 11 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 575.1 bits (1481), Expect = 1.500e-160
Identity = 274/349 (78.51%), Postives = 302/349 (86.53%), Query Frame = 0 
Query:   10 NGIKENVIEYYGSKLKTNADLKTTACCTATVPKKLRRLLKDVHDEVLEKFYGCGSPLPEGLEGCTVLDIGSGSGRDCFVASQLVGPNGTVIGVDMTDEQLAVARAHVDWHMQRYGYSKPNVTFLKGVIEDLLSVGIQDATVDVCVSNCVLNLSPNKPQVLSEIFRVLKPGGELYFSDVFCDRRLPAALKGDQEVLGECLGGALYIEDFRRLLVDLGCKDFRVMDKAEIQVTDEGIAAKVGLARFHSLTLRCFKLPGLEDRCEEFGQFATYKGTMTGMPVAFDLDDSHRFETGRAVAVCGNTALMLTDTRFAPHFKVVGDTSVHYGLFQGSGVCAPPPEESSNSKFGACC 359
            + +KENV EYYGSKL+TNADLKTTACC A++PKKLR LLKD+H+ VLEKFYGCGSPLPEGLEGCTVLD+GSGSGRD FVAS+LVG +GTVIGVDMT+EQLAVARAHVDWHM+RYGY K NVTF  GVIEDL S+GI DA+VDVCVSNCVLNLSP+K QVL EIFRVLKPGGELYFSDVFCDRRLP  L+ DQEVLGECLGGALYIED RRLL +LGCKD+R+M++ EIQ+TDE IAAKVGLARF SLTLRCFKLP LEDRCE+FGQFATY GT+   PV+F+LD  H+FE GRA AVCGNTA MLT TRFAPHF V GDTSVHYGLF  SGV    P  +  S FGACC
Sbjct:    6 SNVKENVREYYGSKLQTNADLKTTACCAASIPKKLRALLKDIHENVLEKFYGCGSPLPEGLEGCTVLDLGSGSGRDSFVASRLVGAHGTVIGVDMTEEQLAVARAHVDWHMERYGYDKANVTFRHGVIEDLASMGIADASVDVCVSNCVLNLSPDKAQVLREIFRVLKPGGELYFSDVFCDRRLPGTLREDQEVLGECLGGALYIEDVRRLLAELGCKDYRIMEQTEIQITDEAIAAKVGLARFFSLTLRCFKLPELEDRCEDFGQFATYLGTLD--PVSFELDQGHQFEAGRARAVCGNTAAMLTHTRFAPHFSVTGDTSVHYGLFGSSGVLVSSP-HTIGSTFGACC 351
The following BLAST results are available for this feature:
BLAST of NO12G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856121.11.500e-16078.51methyltransferase type 11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01860NO12G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01860.1NO12G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01860.1.cds1NO12G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01860.1.cds2NO12G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01860.1.cds3NO12G01860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01860.1.cds4NO12G01860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01860.1.cds5NO12G01860.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01860.1 ID=NO12G01860.1|Name=NO12G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
AGGGTCCAAATTATCTGTCCCTAGCAGCCATGTCATTATCGGTGGCCGCG
GAGGCGAATGGTATCAAGGAGAACGTCATAGAGTACTACGGTTCCAAGCT
TAAAACAAACGCCGACCTCAAGACTACTGCTTGTTGTACCGCCACCGTTC
CTAAGAAGCTCCGAAGACTCCTCAAAGATGTGCACGACGAAGTTCTCGAA
AAGTTTTACGGGTGCGGCAGCCCTCTGCCTGAGGGCCTGGAGGGATGCAC
GGTGCTGGATATTGGCTCCGGCTCGGGCCGGGATTGCTTCGTTGCCTCAC
AGCTTGTAGGTCCGAACGGCACGGTGATCGGCGTGGACATGACGGACGAG
CAGCTCGCCGTCGCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGG
GTACAGCAAGCCCAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTAC
TTTCCGTGGGGATCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGT
GTGTTGAACCTCTCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAG
GGTGCTGAAGCCAGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATC
GGCGCTTGCCGGCGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGT
CTAGGTGGGGCGTTGTATATTGAGGATTTCCGTCGCCTCCTTGTTGACTT
AGGCTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCG
ACGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACG
TTGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGG
ACAGTTTGCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTG
ACTTGGACGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGT
GGGAATACGGCCTTGATGCTAACCGACACGCGCTTCGCCCCGCACTTTAA
GGTGGTGGGAGATACGTCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTG
TGTGTGCCCCCCCTCCTGAAGAGTCATCGAACAGCAAATTTGGAGCGTGT
TGTTGAGCGAGGGAGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAA
TGGCTTAACTGAAGGGATCGAGGAAATCCGAGCAAGTAATTTGTGGGTAG
AAAACGTTTTAAAAAAAATGACAGGAAGGATTTAAAGAAATGAATGAAAC
AAACAAATATGTTAAACAA
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protein sequence of NO12G01860.1

>NO12G01860.1-protein ID=NO12G01860.1-protein|Name=NO12G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSLSVAAEANGIKENVIEYYGSKLKTNADLKTTACCTATVPKKLRRLLKD
VHDEVLEKFYGCGSPLPEGLEGCTVLDIGSGSGRDCFVASQLVGPNGTVI
GVDMTDEQLAVARAHVDWHMQRYGYSKPNVTFLKGVIEDLLSVGIQDATV
DVCVSNCVLNLSPNKPQVLSEIFRVLKPGGELYFSDVFCDRRLPAALKGD
QEVLGECLGGALYIEDFRRLLVDLGCKDFRVMDKAEIQVTDEGIAAKVGL
ARFHSLTLRCFKLPGLEDRCEEFGQFATYKGTMTGMPVAFDLDDSHRFET
GRAVAVCGNTALMLTDTRFAPHFKVVGDTSVHYGLFQGSGVCAPPPEESS
NSKFGACC*
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mRNA from alignment at chr12:535569..537521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01860.1 ID=NO12G01860.1|Name=NO12G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr12:535569..537521- (Nannochloropsis oceanica)
AGGGTCCAAATTATCTGTCCCTAGCAGCCATGTCATTATCGGTGGCCGCG
GAGGCGAATGGTATCAAGGAGAACGTCATAGAGTAAGTGCTATCTTATCG
TCGTCAACATCCCCTCCACCACCCTCTCCTCATAGTGAATAGTGAACAGG
AGTATGACGGTAGTGTAGCTTTGGGTTGTCTGGAAGACAGTTCCTAGAAA
AGCCGCTTAGATGATTATTACGAGGGTGGCGCACGAAATGATGTTCGATC
AAAGCGTACGGCGTGCCCTCTCTCTTCGAACCGACCTTATCATACACTTT
CTACATACAACACAGGTACTACGGTTCCAAGCTTAAAACAAACGCCGACC
TCAAGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAGA
CTCCTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCGG
CAGCCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGCT
CCGGCTCGGGCCGGGATTGCTTCGTTGGTACGTGTCTATTTCTTGATTGA
AGAATCAGGATTAGGAGGATCATGCGGTCGGTCGAGCACTCGGGGACGGA
AACGCATTCCGTGCGAGGGGATGTAGGTGACAGGCGGGATTGAGCATTTC
TTCTGCTTGCTATATGCGCGTCGTCCATCTTCCACATTTTTCTGCATCGT
TGCTTACTATCCTTGCCCTCCTTTCGTCATAGCCTCACAGCTTGTAGGTC
CGAACGGCACGGTGATCGGCGTGGACATGACGGACGAGCAGCTCGCCGTC
GCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGGGTACAGCAAGCC
CAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTACTTTCCGTGGGGA
TCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGTGTGTTGAACCTC
TCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGGTGCTGAAGCC
AGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGGCGCTTGCCGG
CGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCTAGGTGGGGCG
TTGTATATTGGTACGTTGAGAGGGAGGGAGGGAGGGAGGGAGTAGAACCC
ATCACCTCACGCATCCGCCCTTCTCTCCCTCCGCACTTCCCTCCTTCCCT
CCCTCCCTTCCCCCTAAAAAGAGGATTTCCGTCGCCTCCTTGTTGACTTA
GGCTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCGA
CGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACGT
TGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGGA
CAGTTTGCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTGA
CTTGGACGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGTG
GGAATACGGCCTTGATGGTACGTGGATGAAGAGGGAGTGGTAGAGGGAGA
GAGTGTGGAGTGCTTGTGATGTGAGTCGCCAACTTGTGTACATGCATTTG
TGCCATCAACCTGGTCTTGCTCTAAATTAACTCCCCTTTCTCCCCCGTAC
AGCTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATACG
TCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCTCC
TGAAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAGCGAGGGAGA
AGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAATGGCTTAACTGAAGGG
ATCGAGGAAATCCGAGCAAGTAATTTGTGGGTAGAAAACGTTTTAAAAAA
AATGACAGGAAGGATTTAAAGAAATGAATGAAACAAACAAATATGTTAAA
CAA
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Coding sequence (CDS) from alignment at chr12:535569..537521-

>NO12G01860.1 ID=NO12G01860.1|Name=NO12G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr12:535569..537521- (Nannochloropsis oceanica)
ATGTCATTATCGGTGGCCGCGGAGGCGAATGGTATCAAGGAGAACGTCAT
AGAGTACTACGGTTCCAAGCTTAAAACAAACGCCGACCTCAAGACTACTG
CTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAGACTCCTCAAAGAT
GTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCGGCAGCCCTCTGCC
TGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGCTCCGGCTCGGGCC
GGGATTGCTTCGTTGCCTCACAGCTTGTAGGTCCGAACGGCACGGTGATC
GGCGTGGACATGACGGACGAGCAGCTCGCCGTCGCCCGCGCCCACGTGGA
TTGGCACATGCAACGCTACGGGTACAGCAAGCCCAATGTCACTTTCCTCA
AAGGCGTCATCGAAGACTTACTTTCCGTGGGGATCCAAGACGCGACTGTG
GACGTATGCGTCAGCAATTGTGTGTTGAACCTCTCCCCGAACAAGCCTCA
AGTTTTATCAGAGATTTTCAGGGTGCTGAAGCCAGGGGGCGAGTTGTACT
TTTCCGATGTTTTTTGCGATCGGCGCTTGCCGGCGGCTTTAAAGGGGGAT
CAAGAGGTTCTGGGAGAGTGTCTAGGTGGGGCGTTGTATATTGAGGATTT
CCGTCGCCTCCTTGTTGACTTAGGCTGCAAAGACTTCCGGGTCATGGACA
AGGCAGAGATCCAAGTGACCGACGAGGGCATAGCGGCTAAAGTGGGCCTT
GCCCGATTTCATTCCCTGACGTTGCGTTGTTTCAAGCTGCCGGGGCTTGA
GGACCGGTGTGAGGAGTTCGGACAGTTTGCGACGTACAAGGGGACGATGA
CGGGGATGCCGGTGGCGTTTGACTTGGACGACTCGCACCGGTTTGAGACG
GGGCGGGCGGTGGCTGTGTGTGGGAATACGGCCTTGATGCTAACCGACAC
GCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATACGTCGGTGCATTACG
GCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCTCCTGAAGAGTCATCG
AACAGCAAATTTGGAGCGTGTTGTTGA
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Synonyms
Publications