NO12G01800.1, NO12G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01800.1
Unique NameNO12G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr12:526865..527656 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:526865..527656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01800.1 vs.
Match: XP_008618606.1 (hypothetical protein SDRG_14268 [Saprolegnia diclina VS20]; EQC27993.1 hypothetical protein SDRG_14268 [Saprolegnia diclina VS20])

HSP 1 Score: 147.9 bits (372), Expect = 4.400e-32
Identity = 88/238 (36.97%), Postives = 133/238 (55.88%), Query Frame = 0 
Query:    8 ALDRLSQAVGAKAMYKRCEPLLLGGFQDGADWARRRGALLTLSMTAKGCDTALQFHLPELLPLLISFVRDPHPRVRYACQVCLTRLCDDLPNEPDGRPFQKQYGGIVLPAVIISLTDPGNQAYPRILASAALAVSSFAVPNKCTPKVLKPHLEPLLRSLFHLLDTAALFVKEESMTAVAMVAAVAEEAFRPFFATFVPIVKMLLSEATRDSDGTMCLLGMKALEAFAMIGDAVGREAF 246
            AL RL+  VG K M     PL+    Q  A W +R  AL  L +  +G +T L   LP LLP ++  + DPHPRVRYA   CL +  +D  +   G+ FQ ++G  ++P +I ++++   +A  R  A AA  + +F  P  C P  + P L+PLL +LF  L +    V+E+++TAVA +A V  +AF  ++  F+P+ K +L  A         LL  KA+E+ A+IG AVG++AF
Sbjct:  337 ALLRLTNDVGGKVMLPIALPLVAQALQAPA-WQKRHAALYALGLMGEGANTLLYKELPSLLPAIVQRLEDPHPRVRYAALFCLGQFTEDFGSVERGKNFQAKFGADIIPELIPAISE--REAVLRNRALAANVICTFCHPEHCKPANVLPFLDPLLSTLFAALGSCPREVQEQAITAVACIATVVGDAFVGYYNVFMPVAKQVLLHA---HGKQFALLRGKAMESVALIGQAVGKDAF 568
The following BLAST results are available for this feature:
BLAST of NO12G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008618606.14.400e-3236.97hypothetical protein SDRG_14268 [Saprolegnia dicli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01800NO12G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01800.1NO12G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01800.1.cds1NO12G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01800.1 ID=NO12G01800.1|Name=NO12G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGGCGGAGGCAGCTTTATTTGCGCTGGATCGGTTGAGTCAAGCGGTGGG
AGCCAAGGCAATGTATAAACGCTGCGAGCCCTTGCTTTTGGGGGGTTTTC
AAGACGGAGCGGACTGGGCACGCCGGCGAGGAGCCCTGTTGACTTTGTCT
ATGACTGCGAAAGGATGTGATACGGCATTACAGTTTCATTTGCCGGAGCT
CTTACCTTTACTTATTAGTTTTGTCCGGGATCCTCACCCACGCGTGCGGT
ATGCCTGTCAAGTGTGTCTCACCCGGTTGTGCGATGACTTGCCAAATGAG
CCAGATGGTCGGCCTTTCCAAAAGCAGTACGGGGGCATCGTCCTACCTGC
TGTGATTATCTCCTTGACAGATCCCGGTAACCAGGCTTACCCGCGTATCC
TGGCTAGTGCGGCATTGGCCGTCTCCTCGTTTGCGGTCCCTAATAAATGC
ACTCCCAAAGTTCTCAAGCCTCATTTGGAGCCATTGCTCCGATCACTTTT
TCATTTGTTGGACACGGCAGCCCTGTTTGTGAAGGAGGAGTCGATGACGG
CAGTGGCGATGGTTGCCGCAGTTGCCGAGGAAGCCTTTCGTCCATTCTTC
GCCACGTTTGTGCCGATTGTCAAGATGTTGTTGAGTGAGGCGACGAGGGA
TAGCGATGGAACGATGTGTTTACTGGGGATGAAGGCACTGGAGGCGTTTG
CCATGATAGGGGATGCGGTGGGCAGGGAAGCGTTCCGAAAGACGCGCATG
ACATTTTGCAACTCATTTCAGGCTGTAACCAGACGCTATTGA
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protein sequence of NO12G01800.1

>NO12G01800.1-protein ID=NO12G01800.1-protein|Name=NO12G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MAEAALFALDRLSQAVGAKAMYKRCEPLLLGGFQDGADWARRRGALLTLS
MTAKGCDTALQFHLPELLPLLISFVRDPHPRVRYACQVCLTRLCDDLPNE
PDGRPFQKQYGGIVLPAVIISLTDPGNQAYPRILASAALAVSSFAVPNKC
TPKVLKPHLEPLLRSLFHLLDTAALFVKEESMTAVAMVAAVAEEAFRPFF
ATFVPIVKMLLSEATRDSDGTMCLLGMKALEAFAMIGDAVGREAFRKTRM
TFCNSFQAVTRRY*
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mRNA from alignment at chr12:526865..527656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01800.1 ID=NO12G01800.1|Name=NO12G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at chr12:526865..527656+ (Nannochloropsis oceanica)
ATGGCGGAGGCAGCTTTATTTGCGCTGGATCGGTTGAGTCAAGCGGTGGG
AGCCAAGGCAATGTATAAACGCTGCGAGCCCTTGCTTTTGGGGGGTTTTC
AAGACGGAGCGGACTGGGCACGCCGGCGAGGAGCCCTGTTGACTTTGTCT
ATGACTGCGAAAGGATGTGATACGGCATTACAGTTTCATTTGCCGGAGCT
CTTACCTTTACTTATTAGTTTTGTCCGGGATCCTCACCCACGCGTGCGGT
ATGCCTGTCAAGTGTGTCTCACCCGGTTGTGCGATGACTTGCCAAATGAG
CCAGATGGTCGGCCTTTCCAAAAGCAGTACGGGGGCATCGTCCTACCTGC
TGTGATTATCTCCTTGACAGATCCCGGTAACCAGGCTTACCCGCGTATCC
TGGCTAGTGCGGCATTGGCCGTCTCCTCGTTTGCGGTCCCTAATAAATGC
ACTCCCAAAGTTCTCAAGCCTCATTTGGAGCCATTGCTCCGATCACTTTT
TCATTTGTTGGACACGGCAGCCCTGTTTGTGAAGGAGGAGTCGATGACGG
CAGTGGCGATGGTTGCCGCAGTTGCCGAGGAAGCCTTTCGTCCATTCTTC
GCCACGTTTGTGCCGATTGTCAAGATGTTGTTGAGTGAGGCGACGAGGGA
TAGCGATGGAACGATGTGTTTACTGGGGATGAAGGCACTGGAGGCGTTTG
CCATGATAGGGGATGCGGTGGGCAGGGAAGCGTTCCGAAAGACGCGCATG
ACATTTTGCAACTCATTTCAGGCTGTAACCAGACGCTATTGA
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Coding sequence (CDS) from alignment at chr12:526865..527656+

>NO12G01800.1 ID=NO12G01800.1|Name=NO12G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr12:526865..527656+ (Nannochloropsis oceanica)
ATGGCGGAGGCAGCTTTATTTGCGCTGGATCGGTTGAGTCAAGCGGTGGG
AGCCAAGGCAATGTATAAACGCTGCGAGCCCTTGCTTTTGGGGGGTTTTC
AAGACGGAGCGGACTGGGCACGCCGGCGAGGAGCCCTGTTGACTTTGTCT
ATGACTGCGAAAGGATGTGATACGGCATTACAGTTTCATTTGCCGGAGCT
CTTACCTTTACTTATTAGTTTTGTCCGGGATCCTCACCCACGCGTGCGGT
ATGCCTGTCAAGTGTGTCTCACCCGGTTGTGCGATGACTTGCCAAATGAG
CCAGATGGTCGGCCTTTCCAAAAGCAGTACGGGGGCATCGTCCTACCTGC
TGTGATTATCTCCTTGACAGATCCCGGTAACCAGGCTTACCCGCGTATCC
TGGCTAGTGCGGCATTGGCCGTCTCCTCGTTTGCGGTCCCTAATAAATGC
ACTCCCAAAGTTCTCAAGCCTCATTTGGAGCCATTGCTCCGATCACTTTT
TCATTTGTTGGACACGGCAGCCCTGTTTGTGAAGGAGGAGTCGATGACGG
CAGTGGCGATGGTTGCCGCAGTTGCCGAGGAAGCCTTTCGTCCATTCTTC
GCCACGTTTGTGCCGATTGTCAAGATGTTGTTGAGTGAGGCGACGAGGGA
TAGCGATGGAACGATGTGTTTACTGGGGATGAAGGCACTGGAGGCGTTTG
CCATGATAGGGGATGCGGTGGGCAGGGAAGCGTTCCGAAAGACGCGCATG
ACATTTTGCAACTCATTTCAGGCTGTAACCAGACGCTATTGA
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Synonyms
Publications