NO12G01000.2, NO12G01000.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01000.2
Unique NameNO12G01000.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2657
Alignment locationchr12:316797..319765 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:316797..319765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01000.2 vs.
Match: XP_005853533.1 (myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU22827.1 myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 137.5 bits (345), Expect = 1.100e-28
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 0 
Query:  258 GYWGHIAGHLPGRTDGQCRSRWYQTFHPHTNRGDWGEEEVGRLERLFEAYGPDWVKIAGEIGTGRTRQQVKQMWARMMRAEAKQARKREKEAQKGKEKEEKVAKKRKKGGATEDYEEDQCRGEGRGGGGR 388
            G+W  +A HLPGR+D QCRSRWYQT HPHTNRGDW EEEVGRL  L E +GP+WVKIAGE+G+GRTRQQVKQM +R++R E ++ + REKE     ++ E+V K++++G             +G+GGGGR
Sbjct:    1 GWWRSVANHLPGRSDVQCRSRWYQTLHPHTNRGDWSEEEVGRLRALVETHGPNWVKIAGEMGSGRTRQQVKQMHSRLVREETRREKAREKE-----KEAERVRKEQREGRGRV--------AQGKGGGGR 117
The following BLAST results are available for this feature:
BLAST of NO12G01000.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853533.11.100e-2856.15myb-like dna-binding domain containing protein, pa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01000NO12G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01000.2NO12G01000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01000.2.cds1NO12G01000.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01000.2.cds2NO12G01000.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01000.2 ID=NO12G01000.2|Name=NO12G01000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2657bp
GCATTGCCTATGTGGTGTTGATGTGTAGGTAGAGAAAGAGATGTCGGAGA
CAGGTGAGGTGATTTCGTGCTTCAGCCCTGACAGTGATTTTGTAAAAGGA
GGATGATGATGCCGTTGCTCCGAGCTACTGCCCCCTCCCTTTCCCTCTTT
CCCTCTTTCGGGAGCAACCACTCACGTAACCAACACGCACCACACCCACA
TCACACAGATTGAGAAGGTATGACACAGCCAGTTGTCGACGGGGGGGGGA
ATGATGAGGATAACTTCCCACCTCCGCCAGACGTGAACCTGCTTGACAAC
GACGGGGACGACGACACTATAGTAGGGCAGCAGCACCATCCACCCACCTT
GCACGCAGGCACTATGCCATCCAACTTCCAACACCAGCAGCACCATTACC
ATCCTCACCACCGCAAGGAGACGCAGCAGCAACGGCAGGACAATGGCCCG
GCGGCGACGCTGGCGGAGTGGAGGAAGCGCACTGAGATGGGGAAGAAGCG
AATGAAGATGCTATTGGACGAATACCATGCATCCCTGTCAGAACGCCAAG
CCACTTTCTACCGAGAAGTGGAAGCCGTGCACCAAGCCCGGGAAGTGGAC
ATAGTGCCACATAATATGCAATCGTATTTCACCTCGTACTGGCAAGACGA
ACGGGGGAAACGCCCCCCAACCGTAGGGCAGTCGAAAGCGATTAAGCTGC
ACCTGCAACGGTTGAGTGAGGCCCTTGAGGAAAATGGATGGACGACCACC
GAGGAGGTCGGTAGGCTGTCGCTGATGTCGTTAGAAGTGTGACCGGGACG
CAACCCTCTCTCTCTCTCTCCCTCTCTATCCATCTCTGGTCTTGCCTTTC
GGAGCAGTCAGAAGCAAAACCTTCCCTCGCCCTCCCTCCTCCATGACTCT
ATTCTCACAACGCCCCCCTCCTTACTTTACTCGCACAGAAAATATTCAAA
CAAATGGTCTTGGATGAGAAAGCGGCGATTCATGCCCGCCTCAAGCTGAA
AGGGAGGAGCGCCCCCCCCCTGTGGGGGAGAATGACTGAGGCGCAACGTG
CAGAGGACTCGCGCGTAGAAGCGCTGATTGACTGGCGCAAGATCTCCGAA
AAGCTGCGTCGACACCACCCCAAGCGCTTGCGTCTCGCGCCTCGGCCCGT
TCTCGCACTCCTTACCCATTGGAAAAACAAAGTGAGCGTCCCCCCGACGT
TCACGGCCGAGGAGAAGGAGAGATTACGGCAGTTAGTGCAGCGGCACAAG
GAGCATGAGTGGGAGGAGGTGGCTAAAAGGATGGGGACCGGTCATTCGGG
TATTCAGTGCTTGAGGGAATATCAGCGAGGAGGAGGAGGAGGTGGAGGAG
GAGAAGGACGAGGAAAGGGAAGAGGAGGAGGAGCGATAACCTCCTCCTTA
AATTCTTTAGCTGCGGCTTCTTCCGCGCATATCAAACATGGGCTTTGGAC
GAGGGATGAAGACGGAAGGCTGGCCGCTGCAGTGGGGATGTACGCGGACA
ATTGGTCTTTGGTCTCTGATCATGTTGCCACCCGCACGGCGTCCCAATGC
CGTCATCGGCAGAACAGTTTGCTCATGGACAAAACGCCGTTCAGTCGAGA
GGAGCAAAAACGATTAATTTTGGCGACCAAGGCCTATGCACCTGAGGTGT
GGAAGGCGGTGCAGGAGGGGAAGCAGAGACCGACGGAAAGCAACCTGATG
GCGCATGAGGGAGGGGGATCTGGAGGTTATTGGGGTCACATTGCGGGGCA
TTTGCCAGGCAGGACGGATGGACAGTGCCGTTCGCGGTGGTACCAGACGT
TTCACCCCCACACCAACCGGGGGGACTGGGGGGAGGAGGAGGTGGGGAGG
CTGGAACGGTTATTTGAAGCCTATGGGCCGGATTGGGTCAAAATTGCGGG
AGAGATTGGAACGGGTCGAACGCGGCAACAGGTCAAGCAGATGTGGGCAC
GGATGATGAGAGCAGAAGCGAAGCAGGCGAGGAAGAGGGAGAAAGAGGCA
CAGAAGGGAAAGGAGAAGGAGGAGAAGGTAGCAAAGAAGAGGAAGAAGGG
TGGTGCTACGGAAGACTACGAGGAGGACCAATGTAGAGGAGAAGGAAGAG
GAGGAGGAGGAAGAGAGGTCCATGCGTCCGGTGCAACGAGGAGCAAGGGG
GAAAGGCTCCGCAAGTCTAAGCTGACGGCGGCGGAAATGGCTACGGAGAA
GAAGAGGAAAGGGGAGCAGGTCCGGGAGCGACGGGCTTCGGGACTGGCCA
AGTCAAGGAAACGAGGACGAGGGATGCGTTTGGAAGAGGAGGAGAGTGAC
AGCAATGATGAGGAGGGAGAGGAAGGGGAGGAGGAGGAGGATAAGGAAGG
GGGGGGGAGGAGGAAGAAGGGGAGGGTGCTAGACACGTAAAGGGGAAGAG
GAGGAGGAGAGGGAGCGTGGGCAGTGGTGATGGAATAAGAGGAGGACGAG
GAGGAGGAAGCGGGAAAGGAGTGCAGGGGATAGAGAAAGTGACTGCGGAG
ATGGGAGGATTGGCGGTGACGACAAGAACGAGGAGGGGGGAGGGCGGGAA
GGGGTTTTACCGGCCTTGCCCACCGCACCGCTGCCCCCGTTGGATGCGAA
CGAGCAGGAGGTGGATGTGAGGGGGTTGTAGGGTGTAGGAGGATCGTCAC
GTGGATC
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protein sequence of NO12G01000.2

>NO12G01000.2-protein ID=NO12G01000.2-protein|Name=NO12G01000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MVLDEKAAIHARLKLKGRSAPPLWGRMTEAQRAEDSRVEALIDWRKISEK
LRRHHPKRLRLAPRPVLALLTHWKNKVSVPPTFTAEEKERLRQLVQRHKE
HEWEEVAKRMGTGHSGIQCLREYQRGGGGGGGGEGRGKGRGGGAITSSLN
SLAAASSAHIKHGLWTRDEDGRLAAAVGMYADNWSLVSDHVATRTASQCR
HRQNSLLMDKTPFSREEQKRLILATKAYAPEVWKAVQEGKQRPTESNLMA
HEGGGSGGYWGHIAGHLPGRTDGQCRSRWYQTFHPHTNRGDWGEEEVGRL
ERLFEAYGPDWVKIAGEIGTGRTRQQVKQMWARMMRAEAKQARKREKEAQ
KGKEKEEKVAKKRKKGGATEDYEEDQCRGEGRGGGGREVHASGATRSKGE
RLRKSKLTAAEMATEKKRKGEQVRERRASGLAKSRKRGRGMRLEEEESDS
NDEEGEEGEEEEDKEGGGRRKKGRVLDT*
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mRNA from alignment at chr12:316797..319765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01000.2 ID=NO12G01000.2|Name=NO12G01000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2969bp|location=Sequence derived from alignment at chr12:316797..319765- (Nannochloropsis oceanica)
GCATTGCCTATGTGGTGTTGATGTGTAGGTAGAGAAAGAGATGTCGGAGA
CAGGTGAGGTGATTTCGTGCTTCAGCCCTGACAGTGATTTTGTAAAAGGA
GGATGATGATGCCGTTGCTCCGAGCTACTGCCCCCTCCCTTTCCCTCTTT
CCCTCTTTCGGGAGCAACCACTCACGTAACCAACACGCACCACACCCACA
TCACACAGATTGAGAAGGTATGACACAGCCAGTTGTCGACGGGGGGGGGA
ATGATGAGGATAACTTCCCACCTCCGCCAGACGTGAACCTGCTTGACAAC
GACGGGGACGACGACACTATAGTAGGGCAGCAGCACCATCCACCCACCTT
GCACGCAGGCACTATGCCATCCAACTTCCAACACCAGCAGCACCATTACC
ATCCTCACCACCGCAAGGAGACGCAGCAGCAACGGCAGGACAATGGCCCG
GCGGCGACGCTGGCGGAGTGGAGGAAGCGCACTGAGATGGGGAAGAAGCG
AATGAAGATGCTATTGGACGAATACCATGTACGTGCCGCGTCAAAGGCGC
AAGCAGCGGCAGCGGCGGGGAACGAGGGGAAACTGTAGACGATCAAGGGG
GTGGGAAGAAGGCGCGACAAGCGGAACAGACTGTCTCAGCTCACAACGCA
CCCTCTCTCCTCTCCATTCCCACTCACACATATACACAAAGGCATCCCTG
TCAGAACGCCAAGCCACTTTCTACCGAGAAGTGGAAGCCGTGCACCAAGC
CCGGGAAGTGGACATAGTGCCACATAATATGCAATCGTATTTCACCTCGT
ACTGGCAAGACGAACGGGGGAAACGCCCCCCAACCGTAGGGCAGTCGAAA
GCGATTAAGCTGCACCTGCAACGGTTGAGTGAGGCCCTTGAGGAAAATGG
ATGGACGACCACCGAGGAGGTCGGTAGGCTGTCGCTGATGTCGTTAGAAG
TGTGACCGGGACGCAACCCTCTCTCTCTCTCTCCCTCTCTATCCATCTCT
GGTCTTGCCTTTCGGAGCAGTCAGAAGCAAAACCTTCCCTCGCCCTCCCT
CCTCCATGACTCTATTCTCACAACGCCCCCCTCCTTACTTTACTCGCACA
GAAAATATTCAAACAAATGGTCTTGGATGAGAAAGCGGCGATTCATGCCC
GCCTCAAGCTGAAAGGGAGGAGCGCCCCCCCCCTGTGGGGGAGAATGACT
GAGGCGCAACGTGCAGAGGACTCGCGCGTAGAAGCGCTGATTGACTGGCG
CAAGGTAAGTGCAAAGGGGGACAAGGGGTGGAAGGGGGGGAGGGAGAATG
GTCTTGCGCAACCTAAGGAAGGCACGTGGTGCCTTCATTGATGTGCTTTC
TTGCGACGTTTGTCTCGCTCGCTGCACACTCACCTTTCCTCCTCCTCCTT
CAGATCTCCGAAAAGCTGCGTCGACACCACCCCAAGCGCTTGCGTCTCGC
GCCTCGGCCCGTTCTCGCACTCCTTACCCATTGGAAAAACAAAGTGAGCG
TCCCCCCGACGTTCACGGCCGAGGAGAAGGAGAGATTACGGCAGTTAGTG
CAGCGGCACAAGGAGCATGAGTGGGAGGAGGTGGCTAAAAGGATGGGGAC
CGGTCATTCGGGTATTCAGTGCTTGAGGGAATATCAGCGAGGAGGAGGAG
GAGGTGGAGGAGGAGAAGGACGAGGAAAGGGAAGAGGAGGAGGAGCGATA
ACCTCCTCCTTAAATTCTTTAGCTGCGGCTTCTTCCGCGCATATCAAACA
TGGGCTTTGGACGAGGGATGAAGACGGAAGGCTGGCCGCTGCAGTGGGGA
TGTACGCGGACAATTGGTCTTTGGTCTCTGATCATGTTGCCACCCGCACG
GCGTCCCAATGCCGTCATCGGCAGAACAGTTTGCTCATGGACAAAACGCC
GTTCAGTCGAGAGGAGCAAAAACGATTAATTTTGGCGACCAAGGCCTATG
CACCTGAGGTGTGGAAGGCGGTGCAGGAGGGGAAGCAGAGACCGACGGAA
AGCAACCTGATGGCGCATGAGGGAGGGGGATCTGGAGGTTATTGGGGTCA
CATTGCGGGGCATTTGCCAGGCAGGACGGATGGACAGTGCCGTTCGCGGT
GGTACCAGACGTTTCACCCCCACACCAACCGGGGGGACTGGGGGGAGGAG
GAGGTGGGGAGGCTGGAACGGTTATTTGAAGCCTATGGGCCGGATTGGGT
CAAAATTGCGGGAGAGATTGGAACGGGTCGAACGCGGCAACAGGTCAAGC
AGATGTGGGCACGGATGATGAGAGCAGAAGCGAAGCAGGCGAGGAAGAGG
GAGAAAGAGGCACAGAAGGGAAAGGAGAAGGAGGAGAAGGTAGCAAAGAA
GAGGAAGAAGGGTGGTGCTACGGAAGACTACGAGGAGGACCAATGTAGAG
GAGAAGGAAGAGGAGGAGGAGGAAGAGAGGTCCATGCGTCCGGTGCAACG
AGGAGCAAGGGGGAAAGGCTCCGCAAGTCTAAGCTGACGGCGGCGGAAAT
GGCTACGGAGAAGAAGAGGAAAGGGGAGCAGGTCCGGGAGCGACGGGCTT
CGGGACTGGCCAAGTCAAGGAAACGAGGACGAGGGATGCGTTTGGAAGAG
GAGGAGAGTGACAGCAATGATGAGGAGGGAGAGGAAGGGGAGGAGGAGGA
GGATAAGGAAGGGGGGGGGAGGAGGAAGAAGGGGAGGGTGCTAGACACGT
AAAGGGGAAGAGGAGGAGGAGAGGGAGCGTGGGCAGTGGTGATGGAATAA
GAGGAGGACGAGGAGGAGGAAGCGGGAAAGGAGTGCAGGGGATAGAGAAA
GTGACTGCGGAGATGGGAGGATTGGCGGTGACGACAAGAACGAGGAGGGG
GGAGGGCGGGAAGGGGTTTTACCGGCCTTGCCCACCGCACCGCTGCCCCC
GTTGGATGCGAACGAGCAGGAGGTGGATGTGAGGGGGTTGTAGGGTGTAG
GAGGATCGTCACGTGGATC
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Coding sequence (CDS) from alignment at chr12:316797..319765-

>NO12G01000.2 ID=NO12G01000.2|Name=NO12G01000.2|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr12:316797..319765- (Nannochloropsis oceanica)
ATGGTCTTGGATGAGAAAGCGGCGATTCATGCCCGCCTCAAGCTGAAAGG
GAGGAGCGCCCCCCCCCTGTGGGGGAGAATGACTGAGGCGCAACGTGCAG
AGGACTCGCGCGTAGAAGCGCTGATTGACTGGCGCAAGATCTCCGAAAAG
CTGCGTCGACACCACCCCAAGCGCTTGCGTCTCGCGCCTCGGCCCGTTCT
CGCACTCCTTACCCATTGGAAAAACAAAGTGAGCGTCCCCCCGACGTTCA
CGGCCGAGGAGAAGGAGAGATTACGGCAGTTAGTGCAGCGGCACAAGGAG
CATGAGTGGGAGGAGGTGGCTAAAAGGATGGGGACCGGTCATTCGGGTAT
TCAGTGCTTGAGGGAATATCAGCGAGGAGGAGGAGGAGGTGGAGGAGGAG
AAGGACGAGGAAAGGGAAGAGGAGGAGGAGCGATAACCTCCTCCTTAAAT
TCTTTAGCTGCGGCTTCTTCCGCGCATATCAAACATGGGCTTTGGACGAG
GGATGAAGACGGAAGGCTGGCCGCTGCAGTGGGGATGTACGCGGACAATT
GGTCTTTGGTCTCTGATCATGTTGCCACCCGCACGGCGTCCCAATGCCGT
CATCGGCAGAACAGTTTGCTCATGGACAAAACGCCGTTCAGTCGAGAGGA
GCAAAAACGATTAATTTTGGCGACCAAGGCCTATGCACCTGAGGTGTGGA
AGGCGGTGCAGGAGGGGAAGCAGAGACCGACGGAAAGCAACCTGATGGCG
CATGAGGGAGGGGGATCTGGAGGTTATTGGGGTCACATTGCGGGGCATTT
GCCAGGCAGGACGGATGGACAGTGCCGTTCGCGGTGGTACCAGACGTTTC
ACCCCCACACCAACCGGGGGGACTGGGGGGAGGAGGAGGTGGGGAGGCTG
GAACGGTTATTTGAAGCCTATGGGCCGGATTGGGTCAAAATTGCGGGAGA
GATTGGAACGGGTCGAACGCGGCAACAGGTCAAGCAGATGTGGGCACGGA
TGATGAGAGCAGAAGCGAAGCAGGCGAGGAAGAGGGAGAAAGAGGCACAG
AAGGGAAAGGAGAAGGAGGAGAAGGTAGCAAAGAAGAGGAAGAAGGGTGG
TGCTACGGAAGACTACGAGGAGGACCAATGTAGAGGAGAAGGAAGAGGAG
GAGGAGGAAGAGAGGTCCATGCGTCCGGTGCAACGAGGAGCAAGGGGGAA
AGGCTCCGCAAGTCTAAGCTGACGGCGGCGGAAATGGCTACGGAGAAGAA
GAGGAAAGGGGAGCAGGTCCGGGAGCGACGGGCTTCGGGACTGGCCAAGT
CAAGGAAACGAGGACGAGGGATGCGTTTGGAAGAGGAGGAGAGTGACAGC
AATGATGAGGAGGGAGAGGAAGGGGAGGAGGAGGAGGATAAGGAAGGGGG
GGGGAGGAGGAAGAAGGGGAGGGTGCTAGACACGTAA
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Synonyms
Publications