NO12G01000.1, NO12G01000.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G01000.1
Unique Name	NO12G01000.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2475
Alignment location	chr12:316797..319765 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:316797..319765 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G01000.1 vs.
Match: EWM25936.1 (hypothetical protein Naga_100134g15 [Nannochloropsis gaditana])

HSP 1 Score: 139.8 bits (351), Expect = 3.000e-29
Identity = 85/194 (43.81%), Postives = 117/194 (60.31%), Query Frame = 0

Query:   42 PTLHAGTMPSNFQHQQHHYHPH--HRKETQQQRQDNG---PAATLAEWRKRTEMGKKRMKMLLDEYHASLSERQATFYREVEAVHQAREVDIVPHNMQSYFTSYWQDERGKRPPTVGQSKAIKLHLQRLSEALEENGWTTTEEKIFKQMVLDEKAAIHARLKLKGRSAPPLWGRMTEAQRAEDSRVEALIDWRK 231
            P     T+PS  + + HH        +     R   G   P +    WR+  E G++R+ +L+++Y  SL+ R+  FY  +EA+H+ RE  ++P NMQSY +SYWQDE G+ PP +  S      L+RL+ ALE+ GWT  EEKIFK +VL EKAAI ARL L+G+   PL GRMTE  R ED +VE ++DWRK
Sbjct:   32 PDASGSTIPSLGEAEDHHEQDQLDGHQPGGTDRATGGVRDPRSGEELWRRCME-GRRRIDLLVEDYQRSLATRRVAFYEMIEALHRDREGHVMPRNMQSY-SSYWQDEMGQCPPRIITSPGYSERLRRLNAALEDGGWTPQEEKIFKALVLKEKAAIQARLGLEGKDI-PLLGRMTETARREDDKVERMLDWRK 222

The following BLAST results are available for this feature:

BLAST of NO12G01000.1 vs.

BLAST of NO12G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25936.1	3.000e-29	43.81	hypothetical protein Naga_100134g15 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G01000	NO12G01000	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01000.1	NO12G01000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01000.1.cds1	NO12G01000.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01000.1.cds2	NO12G01000.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01000.1.cds3	NO12G01000.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01000.1.cds4	NO12G01000.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:316797..319765-
coding sequence from alignment at chr12:316797..319765-

mRNA sequence

>NO12G01000.1 ID=NO12G01000.1|Name=NO12G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2475bp
GCATTGCCTATGTGGTGTTGATGTGTAGGTAGAGAAAGAGATGTCGGAGA
CAGGTGAGGTGATTTCGTGCTTCAGCCCTGACAGTGATTTTGTAAAAGGA
GGATGATGATGCCGTTGCTCCGAGCTACTGCCCCCTCCCTTTCCCTCTTT
CCCTCTTTCGGGAGCAACCACTCACGTAACCAACACGCACCACACCCACA
TCACACAGATTGAGAAGGTATGACACAGCCAGTTGTCGACGGGGGGGGGA
ATGATGAGGATAACTTCCCACCTCCGCCAGACGTGAACCTGCTTGACAAC
GACGGGGACGACGACACTATAGTAGGGCAGCAGCACCATCCACCCACCTT
GCACGCAGGCACTATGCCATCCAACTTCCAACACCAGCAGCACCATTACC
ATCCTCACCACCGCAAGGAGACGCAGCAGCAACGGCAGGACAATGGCCCG
GCGGCGACGCTGGCGGAGTGGAGGAAGCGCACTGAGATGGGGAAGAAGCG
AATGAAGATGCTATTGGACGAATACCATGCATCCCTGTCAGAACGCCAAG
CCACTTTCTACCGAGAAGTGGAAGCCGTGCACCAAGCCCGGGAAGTGGAC
ATAGTGCCACATAATATGCAATCGTATTTCACCTCGTACTGGCAAGACGA
ACGGGGGAAACGCCCCCCAACCGTAGGGCAGTCGAAAGCGATTAAGCTGC
ACCTGCAACGGTTGAGTGAGGCCCTTGAGGAAAATGGATGGACGACCACC
GAGGAGAAAATATTCAAACAAATGGTCTTGGATGAGAAAGCGGCGATTCA
TGCCCGCCTCAAGCTGAAAGGGAGGAGCGCCCCCCCCCTGTGGGGGAGAA
TGACTGAGGCGCAACGTGCAGAGGACTCGCGCGTAGAAGCGCTGATTGAC
TGGCGCAAGATCTCCGAAAAGCTGCGTCGACACCACCCCAAGCGCTTGCG
TCTCGCGCCTCGGCCCGTTCTCGCACTCCTTACCCATTGGAAAAACAAAG
TGAGCGTCCCCCCGACGTTCACGGCCGAGGAGAAGGAGAGATTACGGCAG
TTAGTGCAGCGGCACAAGGAGCATGAGTGGGAGGAGGTGGCTAAAAGGAT
GGGGACCGGTCATTCGGGTATTCAGTGCTTGAGGGAATATCAGCGAGGAG
GAGGAGGAGGTGGAGGAGGAGAAGGACGAGGAAAGGGAAGAGGAGGAGGA
GCGATAACCTCCTCCTTAAATTCTTTAGCTGCGGCTTCTTCCGCGCATAT
CAAACATGGGCTTTGGACGAGGGATGAAGACGGAAGGCTGGCCGCTGCAG
TGGGGATGTACGCGGACAATTGGTCTTTGGTCTCTGATCATGTTGCCACC
CGCACGGCGTCCCAATGCCGTCATCGGCAGAACAGTTTGCTCATGGACAA
AACGCCGTTCAGTCGAGAGGAGCAAAAACGATTAATTTTGGCGACCAAGG
CCTATGCACCTGAGGTGTGGAAGGCGGTGCAGGAGGGGAAGCAGAGACCG
ACGGAAAGCAACCTGATGGCGCATGAGGGAGGGGGATCTGGAGGTTATTG
GGGTCACATTGCGGGGCATTTGCCAGGCAGGACGGATGGACAGTGCCGTT
CGCGGTGGTACCAGACGTTTCACCCCCACACCAACCGGGGGGACTGGGGG
GAGGAGGAGGTGGGGAGGCTGGAACGGTTATTTGAAGCCTATGGGCCGGA
TTGGGTCAAAATTGCGGGAGAGATTGGAACGGGTCGAACGCGGCAACAGG
TCAAGCAGATGTGGGCACGGATGATGAGAGCAGAAGCGAAGCAGGCGAGG
AAGAGGGAGAAAGAGGCACAGAAGGGAAAGGAGAAGGAGGAGAAGGTAGC
AAAGAAGAGGAAGAAGGGTGGTGCTACGGAAGACTACGAGGAGGACCAAT
GTAGAGGAGAAGGAAGAGGAGGAGGAGGAAGAGAGGTCCATGCGTCCGGT
GCAACGAGGAGCAAGGGGGAAAGGCTCCGCAAGTCTAAGCTGACGGCGGC
GGAAATGGCTACGGAGAAGAAGAGGAAAGGGGAGCAGGTCCGGGAGCGAC
GGGCTTCGGGACTGGCCAAGTCAAGGAAACGAGGACGAGGGATGCGTTTG
GAAGAGGAGGAGAGTGACAGCAATGATGAGGAGGGAGAGGAAGGGGAGGA
GGAGGAGGATAAGGAAGGGGGGGGGAGGAGGAAGAAGGGGAGGGTGCTAG
ACACGTAAAGGGGAAGAGGAGGAGGAGAGGGAGCGTGGGCAGTGGTGATG
GAATAAGAGGAGGACGAGGAGGAGGAAGCGGGAAAGGAGTGCAGGGGATA
GAGAAAGTGACTGCGGAGATGGGAGGATTGGCGGTGACGACAAGAACGAG
GAGGGGGGAGGGCGGGAAGGGGTTTTACCGGCCTTGCCCACCGCACCGCT
GCCCCCGTTGGATGCGAACGAGCAGGAGGTGGATGTGAGGGGGTTGTAGG
GTGTAGGAGGATCGTCACGTGGATC

protein sequence of NO12G01000.1

>NO12G01000.1-protein ID=NO12G01000.1-protein|Name=NO12G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=663bp
MTQPVVDGGGNDEDNFPPPPDVNLLDNDGDDDTIVGQQHHPPTLHAGTMP
SNFQHQQHHYHPHHRKETQQQRQDNGPAATLAEWRKRTEMGKKRMKMLLD
EYHASLSERQATFYREVEAVHQAREVDIVPHNMQSYFTSYWQDERGKRPP
TVGQSKAIKLHLQRLSEALEENGWTTTEEKIFKQMVLDEKAAIHARLKLK
GRSAPPLWGRMTEAQRAEDSRVEALIDWRKISEKLRRHHPKRLRLAPRPV
LALLTHWKNKVSVPPTFTAEEKERLRQLVQRHKEHEWEEVAKRMGTGHSG
IQCLREYQRGGGGGGGGEGRGKGRGGGAITSSLNSLAAASSAHIKHGLWT
RDEDGRLAAAVGMYADNWSLVSDHVATRTASQCRHRQNSLLMDKTPFSRE
EQKRLILATKAYAPEVWKAVQEGKQRPTESNLMAHEGGGSGGYWGHIAGH
LPGRTDGQCRSRWYQTFHPHTNRGDWGEEEVGRLERLFEAYGPDWVKIAG
EIGTGRTRQQVKQMWARMMRAEAKQARKREKEAQKGKEKEEKVAKKRKKG
GATEDYEEDQCRGEGRGGGGREVHASGATRSKGERLRKSKLTAAEMATEK
KRKGEQVRERRASGLAKSRKRGRGMRLEEEESDSNDEEGEEGEEEEDKEG
GGRRKKGRVLDT*

mRNA from alignment at chr12:316797..319765-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G01000.1 ID=NO12G01000.1|Name=NO12G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2969bp|location=Sequence derived from alignment at chr12:316797..319765- (Nannochloropsis oceanica)
GCATTGCCTATGTGGTGTTGATGTGTAGGTAGAGAAAGAGATGTCGGAGA
CAGGTGAGGTGATTTCGTGCTTCAGCCCTGACAGTGATTTTGTAAAAGGA
GGATGATGATGCCGTTGCTCCGAGCTACTGCCCCCTCCCTTTCCCTCTTT
CCCTCTTTCGGGAGCAACCACTCACGTAACCAACACGCACCACACCCACA
TCACACAGATTGAGAAGGTATGACACAGCCAGTTGTCGACGGGGGGGGGA
ATGATGAGGATAACTTCCCACCTCCGCCAGACGTGAACCTGCTTGACAAC
GACGGGGACGACGACACTATAGTAGGGCAGCAGCACCATCCACCCACCTT
GCACGCAGGCACTATGCCATCCAACTTCCAACACCAGCAGCACCATTACC
ATCCTCACCACCGCAAGGAGACGCAGCAGCAACGGCAGGACAATGGCCCG
GCGGCGACGCTGGCGGAGTGGAGGAAGCGCACTGAGATGGGGAAGAAGCG
AATGAAGATGCTATTGGACGAATACCATGTACGTGCCGCGTCAAAGGCGC
AAGCAGCGGCAGCGGCGGGGAACGAGGGGAAACTGTAGACGATCAAGGGG
GTGGGAAGAAGGCGCGACAAGCGGAACAGACTGTCTCAGCTCACAACGCA
CCCTCTCTCCTCTCCATTCCCACTCACACATATACACAAAGGCATCCCTG
TCAGAACGCCAAGCCACTTTCTACCGAGAAGTGGAAGCCGTGCACCAAGC
CCGGGAAGTGGACATAGTGCCACATAATATGCAATCGTATTTCACCTCGT
ACTGGCAAGACGAACGGGGGAAACGCCCCCCAACCGTAGGGCAGTCGAAA
GCGATTAAGCTGCACCTGCAACGGTTGAGTGAGGCCCTTGAGGAAAATGG
ATGGACGACCACCGAGGAGGTCGGTAGGCTGTCGCTGATGTCGTTAGAAG
TGTGACCGGGACGCAACCCTCTCTCTCTCTCTCCCTCTCTATCCATCTCT
GGTCTTGCCTTTCGGAGCAGTCAGAAGCAAAACCTTCCCTCGCCCTCCCT
CCTCCATGACTCTATTCTCACAACGCCCCCCTCCTTACTTTACTCGCACA
GAAAATATTCAAACAAATGGTCTTGGATGAGAAAGCGGCGATTCATGCCC
GCCTCAAGCTGAAAGGGAGGAGCGCCCCCCCCCTGTGGGGGAGAATGACT
GAGGCGCAACGTGCAGAGGACTCGCGCGTAGAAGCGCTGATTGACTGGCG
CAAGGTAAGTGCAAAGGGGGACAAGGGGTGGAAGGGGGGGAGGGAGAATG
GTCTTGCGCAACCTAAGGAAGGCACGTGGTGCCTTCATTGATGTGCTTTC
TTGCGACGTTTGTCTCGCTCGCTGCACACTCACCTTTCCTCCTCCTCCTT
CAGATCTCCGAAAAGCTGCGTCGACACCACCCCAAGCGCTTGCGTCTCGC
GCCTCGGCCCGTTCTCGCACTCCTTACCCATTGGAAAAACAAAGTGAGCG
TCCCCCCGACGTTCACGGCCGAGGAGAAGGAGAGATTACGGCAGTTAGTG
CAGCGGCACAAGGAGCATGAGTGGGAGGAGGTGGCTAAAAGGATGGGGAC
CGGTCATTCGGGTATTCAGTGCTTGAGGGAATATCAGCGAGGAGGAGGAG
GAGGTGGAGGAGGAGAAGGACGAGGAAAGGGAAGAGGAGGAGGAGCGATA
ACCTCCTCCTTAAATTCTTTAGCTGCGGCTTCTTCCGCGCATATCAAACA
TGGGCTTTGGACGAGGGATGAAGACGGAAGGCTGGCCGCTGCAGTGGGGA
TGTACGCGGACAATTGGTCTTTGGTCTCTGATCATGTTGCCACCCGCACG
GCGTCCCAATGCCGTCATCGGCAGAACAGTTTGCTCATGGACAAAACGCC
GTTCAGTCGAGAGGAGCAAAAACGATTAATTTTGGCGACCAAGGCCTATG
CACCTGAGGTGTGGAAGGCGGTGCAGGAGGGGAAGCAGAGACCGACGGAA
AGCAACCTGATGGCGCATGAGGGAGGGGGATCTGGAGGTTATTGGGGTCA
CATTGCGGGGCATTTGCCAGGCAGGACGGATGGACAGTGCCGTTCGCGGT
GGTACCAGACGTTTCACCCCCACACCAACCGGGGGGACTGGGGGGAGGAG
GAGGTGGGGAGGCTGGAACGGTTATTTGAAGCCTATGGGCCGGATTGGGT
CAAAATTGCGGGAGAGATTGGAACGGGTCGAACGCGGCAACAGGTCAAGC
AGATGTGGGCACGGATGATGAGAGCAGAAGCGAAGCAGGCGAGGAAGAGG
GAGAAAGAGGCACAGAAGGGAAAGGAGAAGGAGGAGAAGGTAGCAAAGAA
GAGGAAGAAGGGTGGTGCTACGGAAGACTACGAGGAGGACCAATGTAGAG
GAGAAGGAAGAGGAGGAGGAGGAAGAGAGGTCCATGCGTCCGGTGCAACG
AGGAGCAAGGGGGAAAGGCTCCGCAAGTCTAAGCTGACGGCGGCGGAAAT
GGCTACGGAGAAGAAGAGGAAAGGGGAGCAGGTCCGGGAGCGACGGGCTT
CGGGACTGGCCAAGTCAAGGAAACGAGGACGAGGGATGCGTTTGGAAGAG
GAGGAGAGTGACAGCAATGATGAGGAGGGAGAGGAAGGGGAGGAGGAGGA
GGATAAGGAAGGGGGGGGGAGGAGGAAGAAGGGGAGGGTGCTAGACACGT
AAAGGGGAAGAGGAGGAGGAGAGGGAGCGTGGGCAGTGGTGATGGAATAA
GAGGAGGACGAGGAGGAGGAAGCGGGAAAGGAGTGCAGGGGATAGAGAAA
GTGACTGCGGAGATGGGAGGATTGGCGGTGACGACAAGAACGAGGAGGGG
GGAGGGCGGGAAGGGGTTTTACCGGCCTTGCCCACCGCACCGCTGCCCCC
GTTGGATGCGAACGAGCAGGAGGTGGATGTGAGGGGGTTGTAGGGTGTAG
GAGGATCGTCACGTGGATC

Coding sequence (CDS) from alignment at chr12:316797..319765-

>NO12G01000.1 ID=NO12G01000.1|Name=NO12G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at chr12:316797..319765- (Nannochloropsis oceanica)
ATGACACAGCCAGTTGTCGACGGGGGGGGGAATGATGAGGATAACTTCCC
ACCTCCGCCAGACGTGAACCTGCTTGACAACGACGGGGACGACGACACTA
TAGTAGGGCAGCAGCACCATCCACCCACCTTGCACGCAGGCACTATGCCA
TCCAACTTCCAACACCAGCAGCACCATTACCATCCTCACCACCGCAAGGA
GACGCAGCAGCAACGGCAGGACAATGGCCCGGCGGCGACGCTGGCGGAGT
GGAGGAAGCGCACTGAGATGGGGAAGAAGCGAATGAAGATGCTATTGGAC
GAATACCATGCATCCCTGTCAGAACGCCAAGCCACTTTCTACCGAGAAGT
GGAAGCCGTGCACCAAGCCCGGGAAGTGGACATAGTGCCACATAATATGC
AATCGTATTTCACCTCGTACTGGCAAGACGAACGGGGGAAACGCCCCCCA
ACCGTAGGGCAGTCGAAAGCGATTAAGCTGCACCTGCAACGGTTGAGTGA
GGCCCTTGAGGAAAATGGATGGACGACCACCGAGGAGAAAATATTCAAAC
AAATGGTCTTGGATGAGAAAGCGGCGATTCATGCCCGCCTCAAGCTGAAA
GGGAGGAGCGCCCCCCCCCTGTGGGGGAGAATGACTGAGGCGCAACGTGC
AGAGGACTCGCGCGTAGAAGCGCTGATTGACTGGCGCAAGATCTCCGAAA
AGCTGCGTCGACACCACCCCAAGCGCTTGCGTCTCGCGCCTCGGCCCGTT
CTCGCACTCCTTACCCATTGGAAAAACAAAGTGAGCGTCCCCCCGACGTT
CACGGCCGAGGAGAAGGAGAGATTACGGCAGTTAGTGCAGCGGCACAAGG
AGCATGAGTGGGAGGAGGTGGCTAAAAGGATGGGGACCGGTCATTCGGGT
ATTCAGTGCTTGAGGGAATATCAGCGAGGAGGAGGAGGAGGTGGAGGAGG
AGAAGGACGAGGAAAGGGAAGAGGAGGAGGAGCGATAACCTCCTCCTTAA
ATTCTTTAGCTGCGGCTTCTTCCGCGCATATCAAACATGGGCTTTGGACG
AGGGATGAAGACGGAAGGCTGGCCGCTGCAGTGGGGATGTACGCGGACAA
TTGGTCTTTGGTCTCTGATCATGTTGCCACCCGCACGGCGTCCCAATGCC
GTCATCGGCAGAACAGTTTGCTCATGGACAAAACGCCGTTCAGTCGAGAG
GAGCAAAAACGATTAATTTTGGCGACCAAGGCCTATGCACCTGAGGTGTG
GAAGGCGGTGCAGGAGGGGAAGCAGAGACCGACGGAAAGCAACCTGATGG
CGCATGAGGGAGGGGGATCTGGAGGTTATTGGGGTCACATTGCGGGGCAT
TTGCCAGGCAGGACGGATGGACAGTGCCGTTCGCGGTGGTACCAGACGTT
TCACCCCCACACCAACCGGGGGGACTGGGGGGAGGAGGAGGTGGGGAGGC
TGGAACGGTTATTTGAAGCCTATGGGCCGGATTGGGTCAAAATTGCGGGA
GAGATTGGAACGGGTCGAACGCGGCAACAGGTCAAGCAGATGTGGGCACG
GATGATGAGAGCAGAAGCGAAGCAGGCGAGGAAGAGGGAGAAAGAGGCAC
AGAAGGGAAAGGAGAAGGAGGAGAAGGTAGCAAAGAAGAGGAAGAAGGGT
GGTGCTACGGAAGACTACGAGGAGGACCAATGTAGAGGAGAAGGAAGAGG
AGGAGGAGGAAGAGAGGTCCATGCGTCCGGTGCAACGAGGAGCAAGGGGG
AAAGGCTCCGCAAGTCTAAGCTGACGGCGGCGGAAATGGCTACGGAGAAG
AAGAGGAAAGGGGAGCAGGTCCGGGAGCGACGGGCTTCGGGACTGGCCAA
GTCAAGGAAACGAGGACGAGGGATGCGTTTGGAAGAGGAGGAGAGTGACA
GCAATGATGAGGAGGGAGAGGAAGGGGAGGAGGAGGAGGATAAGGAAGGG
GGGGGGAGGAGGAAGAAGGGGAGGGTGCTAGACACGTAA

Synonyms

Publications