NO12G00830.1, NO12G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00830.1
Unique NameNO12G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length520
Alignment locationchr12:274939..276619 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:274939..276619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00830.1 vs.
Match: XP_005856039.1 (ke2 family protein [Nannochloropsis gaditana CCMP526]; EKU20332.1 ke2 family protein [Nannochloropsis gaditana CCMP526]; EWM25937.1 ke2 family protein [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 7.900e-46
Identity = 104/132 (78.79%), Postives = 119/132 (90.15%), Query Frame = 0 
Query:    1 MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAAGALKGVM 133
            MSA  +D+AL  YKALEA+TQELMARRQ+ +QQANENGMVQQEL+ LE+G+NV+KMMGPVLLRVE+EDAKQNV KRL+LIK +MEDFD KIQ KQK+AEELG+KIM MQQELQAKTADAA+AAA  ALKGVM
Sbjct:    1 MSASAMDEALASYKALEADTQELMARRQVTLQQANENGMVQQELDGLEAGENVYKMMGPVLLRVELEDAKQNVAKRLDLIKSTMEDFDQKIQGKQKDAEELGTKIMTMQQELQAKTADAAKAAAQDALKGVM 132
The following BLAST results are available for this feature:
BLAST of NO12G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856039.17.900e-4678.79ke2 family protein [Nannochloropsis gaditana CCMP5... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00830NO12G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00830.1NO12G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00830.1.cds1NO12G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00830.1.cds2NO12G00830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00830.1.cds3NO12G00830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00830.1.cds4NO12G00830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00830.1 ID=NO12G00830.1|Name=NO12G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=520bp
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGGAGTTAGAGGCCTTGG
AAAGCGGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTG
GAGGTGGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAA
GGGCTCGATGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAAGGAGG
CTGAGGAGCTCGGCAGCAAGATCATGGGCATGCAACAAGAATTACAAGCC
AAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGGGTGCCTTGAAAGGGGT
CATGGGTTAAAGGAATACAATGCATGCGTGTGTGTTTGCATGTGTGGGTG
TACAAAGAACCAAAACGCCA
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protein sequence of NO12G00830.1

>NO12G00830.1-protein ID=NO12G00830.1-protein|Name=NO12G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESG
DNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEE
LGSKIMGMQQELQAKTADAARAAAAGALKGVMG*
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mRNA from alignment at chr12:274939..276619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00830.1 ID=NO12G00830.1|Name=NO12G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at chr12:274939..276619- (Nannochloropsis oceanica)
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGGTAGGGGAGTGGGGAG
AGGATGAAGGGTGGGAGGATGAAGAGGAAGGAGAATGACGAGGTATCTGA
TCATCGGACAAGATGCACGACTTTCGTTTTGGAGGTCGCTGCAAGCGATG
GAGAGGGGAGGACTGGAGGGAGAGACGGGAGGACGTATGGGAAGGAAATA
AGGGACAACGGTCTTCGATCGAGCCGTGTTTCGACTCCAAGATGTAGCGC
TGTGAGGCGGCTTGGCTTAGCAGACATATACATGGCGAGCGGGAGAGGCG
AAGGGAGATGATAGAAGCACTAGTTGGGCAGGCCGAGAAGAAAAGGACGG
GCAATTGTGTTTCTTTTGCCGCATGGATTCAACCGTGTCGAACTTACAAG
TTTCTCCACCAGTGATGGTGCTAAATGGAAATACGGATACACCTCGACAC
TGGTGTATCTGTGGCTTGGATGGCTGAAGTCGTTGCCGCCATGGGCAGGT
CTTATGACCGTCTGTTGGCCAGCCCTATAATTCCTTAATCCACTCCCTCT
CTGAGATGACTGAAGGGGGTAATAGAGATGAGAAGAACGATAACGAATCC
AAGCACAATTTTTAAAAGGGGAAGGATGATAAGAATGGAAGCACGTGGAA
TATCAGTCAAGCCATCACCTACAATTCCGATTGTCCCTTCATCGTCCACT
CCTCCACTTACACTTATGCCCAGAAAATCACCCACGCACAATTTGTCTGA
AATTCTATTCAACCCTCCTTAACCTCTTCGTACTGTTATTCTCACCGCCA
CCCAACCGCCCACAACATGAAAAATACAGGAGTTAGAGGCCTTGGAAAGC
GGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTGGAGGT
GGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAAGGGCT
CGATGTTAGTTGAAGGGGGAAAGAGGGAGAGAAGGAACGAGGGATGGTGC
AATGGGGGCAACGCAGTAGTCTACAAATGATCTCGTTTCTCATTTTTTCT
CTTGTATCATTCAGGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAA
GGAGGCTGAGGAGCTCGGCAGCAAGGTAAGCTAATCTTGTATAAAACTGT
GAAACTACACGTGTACGTGTGCAGAGTAGTGTGCGTGCATCTGCTTTCGA
CCAAGAGTTGTGCCCTGCTATCAGTCAATCTGGCTTCCGCGCATTTCGTT
TTGTCTTGGACTGGATAAAGGAGGCTACCAGCGATTCACTCTCCACTGTC
GTAGATGTTCTCATAATCTCACAATGCCACCCTCCTTTCCTCCCTCCTTC
CTTTCCTCCCTCCTCCTCTCTCCCTTCCTAGATCATGGGCATGCAACAAG
AATTACAAGCCAAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGGGTGCC
TTGAAAGGGGTCATGGGTTAAAGGAATACAATGCATGCGTGTGTGTTTGC
ATGTGTGGGTGTACAAAGAACCAAAACGCCA
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Coding sequence (CDS) from alignment at chr12:274939..276619-

>NO12G00830.1 ID=NO12G00830.1|Name=NO12G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at chr12:274939..276619- (Nannochloropsis oceanica)
ATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAGGCCCTGGA
GGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAATGCAGCAAG
CAAATGAGAATGGCATGGTGCAGCAGGAGTTAGAGGCCTTGGAAAGCGGC
GACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTGGAGGTGGA
GGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAAGGGCTCGA
TGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAAGGAGGCTGAGGAG
CTCGGCAGCAAGATCATGGGCATGCAACAAGAATTACAAGCCAAGACAGC
CGATGCCGCCCGGGCTGCAGCCGCGGGTGCCTTGAAAGGGGTCATGGGTT
AA
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Synonyms
Publications