NO12G00410.3, NO12G00410.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G00410.3
Unique Name	NO12G00410.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1786
Alignment location	chr12:147145..149877 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:147145..149877 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO12G00410.3 vs.
Match: EWM25983.1 (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 525.8 bits (1353), Expect = 1.100e-145
Identity = 292/355 (82.25%), Postives = 306/355 (86.20%), Query Frame = 0

Query:    1 MGRDYYQVLGVSRGADDKEIKKAYRKEALRWHPDKNPDNQEQAQSKFQDISQAFEVLSDPEKKKIYDMYGEEGLKMGGGEGPPPNGPGGGMG-GGMPEGFAGFARAGGGG-MGTGRGGGS---FGGFSDPADIFAQFFGTSSAFDADGFSFDDLGGGGGRGVGRRGGVGGMPGMSQSMGGMGGIPFGMGMGGGFGGPGASPPRKS-PPRKAEPVEYNFNVTLEDLHTGGKNKKMRITKKIWDAASGKFLHTTVDKDIPIKKGWKNGTKITFEREGDELPGVIPADIVFVLNTKPHPRFEREGDDLVYTATVPLEQALTGVEVTIQTLDGRTLKVGRWVAREGGREGMVEGRRWCV 350
            MG+DYYQVLGVSRGADDKEIKKAYRKEALRWHPDKNPDNQEQAQ+KFQDISQAFEVLSDPEKKKIYDMYGE+GLKMGGGE PP  GPGG  G GG PEGFAGFAR GGGG  G GRGGG    FGGFSDPADIFAQFFGTSSAFDADGFSFDDLGGG G    R  G+GGM       GGMGG+PFGMG GG FGGPGASPPR S PP+KAEP+EYNFNVTLEDL+TGGK KKMRITKKIWDAASGKFLHTTVDK+IPIKKGWKNGTKITFEREGDELPGVIPADIVF+LNTKPHPRFEREGDDLVY ATV LEQALTGVEV++QTLDGR LKV +     GGRE    G  WC+
Sbjct:    1 MGKDYYQVLGVSRGADDKEIKKAYRKEALRWHPDKNPDNQEQAQAKFQDISQAFEVLSDPEKKKIYDMYGEDGLKMGGGEAPP-EGPGGTGGMGGFPEGFAGFARGGGGGGRGGGRGGGGQFHFGGFSDPADIFAQFFGTSSAFDADGFSFDDLGGGRGGARQRVRGMGGM-------GGMGGVPFGMGPGG-FGGPGASPPRSSGPPKKAEPLEYNFNVTLEDLYTGGKQKKMRITKKIWDAASGKFLHTTVDKEIPIKKGWKNGTKITFEREGDELPGVIPADIVFILNTKPHPRFEREGDDLVYAATVTLEQALTGVEVSVQTLDGRVLKVVK-----GGRE-RGRGAVWCM 340

The following BLAST results are available for this feature:

BLAST of NO12G00410.3 vs.

BLAST of NO12G00410.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25983.1	1.100e-145	82.25	heat shock protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G00410	NO12G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G00410.3	NO12G00410.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G00410.3.cds1	NO12G00410.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00410.3.cds2	NO12G00410.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00410.3.cds3	NO12G00410.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00410.3.cds4	NO12G00410.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00410.3.cds5	NO12G00410.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00410.3.cds6	NO12G00410.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:147145..149877+
coding sequence from alignment at chr12:147145..149877+

mRNA sequence

>NO12G00410.3 ID=NO12G00410.3|Name=NO12G00410.3|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
ACAGACCGTGACCACGTGACCACGCTCTGGTCGAATCGTGTCCTTAGGTC
CTCCTTCTCCCGCAGGCCAACCAGTCTCAAGCGTGGCACCGTCAAGCCAA
GCGGAAGGGCACACACATAACGTGCTTGCCCTCCAAAACCAAGTCTAGGC
CACAGCCATAGCGACGCCAAGCAACCGTGGAAACCGCACCAGCAGTAGCA
GTAGCAGCGGCAACAGAAAGCGCTCGCGTGATACTCCGGACGGAGAACAA
GGCGCAAAGAGGGCAGGGAGCCGCAGTAGCAGCAGCAGCGGTACCAGGGG
CACCAGCACGAGACAAGGCAAGAACGACGGAGGAAGGATGGGAAGGGATT
ACTACCAAGTGCTAGGTGTCAGCCGTGGGGCAGACGACAAGGAGATCAAG
AAGGCGTACCGTAAGGAAGCACTCAGATGGCACCCCGACAAGAACCCGGA
CAATCAAGAGCAGGCTCAAAGCAAATTTCAAGATATATCGCAGGCGTTTG
AAGTGCTCTCGGATCCGGAGAAGAAGAAGATCTACGATATGTACGGGGAA
GAGGGCTTGAAGATGGGGGGGGGAGAAGGGCCACCGCCCAATGGGCCAGG
GGGAGGAATGGGGGGAGGGATGCCTGAGGGATTTGCGGGATTTGCACGGG
CAGGAGGAGGAGGGATGGGGACAGGAAGGGGAGGAGGGTCCTTTGGCGGA
TTTTCGGATCCCGCGGATATTTTTGCGCAGTTTTTTGGCACCTCGAGCGC
CTTCGACGCGGACGGGTTCAGTTTCGACGATTTGGGAGGAGGAGGAGGGA
GGGGGGTAGGACGACGGGGAGGAGTCGGGGGGATGCCGGGCATGTCTCAG
AGCATGGGGGGGATGGGGGGGATACCCTTTGGTATGGGCATGGGCGGTGG
TTTCGGCGGCCCTGGTGCTTCTCCCCCTCGAAAAAGCCCGCCCCGAAAGG
CCGAGCCCGTTGAATACAATTTTAACGTCACCCTCGAGGATTTGCACACT
GGGGGCAAGAACAAAAAGATGCGCATCACCAAGAAGATCTGGGACGCGGC
CTCAGGCAAATTTCTCCACACGACCGTGGACAAGGACATTCCTATCAAGA
AAGGGTGGAAAAATGGCACTAAAATCACCTTCGAGCGCGAGGGAGACGAG
CTCCCCGGTGTCATTCCCGCCGATATTGTCTTTGTCCTTAATACGAAGCC
CCATCCTCGCTTTGAACGAGAGGGCGATGACCTGGTGTACACGGCAACGG
TGCCGTTGGAGCAGGCGTTGACAGGCGTGGAGGTAACAATTCAAACGTTA
GACGGACGGACTTTGAAGGTAGGTAGGTGGGTAGCGAGGGAGGGAGGGAG
GGAGGGCATGGTGGAGGGAAGAAGGTGGTGTGTCCGTTGTCTTGCGATCA
ACTTAATCATTCTCCTTGTCCACTCCCTCCCTCTGCTTCTCCCTCCACCT
CTTTCTCCCTCCATTTAGGTGAGCGAGCCGCATGTCACACCAGGGACAGT
AAAGATCCTCCGCGGGGAAGGCATGCCGTTGCAGAAATCACCAGATCGGA
AGGGAAATTTGAAAGTGAAGTTCAACATCGTCTTCCCGACCTTGACCGAC
TCTCAGAAGCGGGAGATCCGGGCGGTATTGAAGGGAGGGAGGGGGTGAGA
GGGAAGGAGGGAGGGAGGGAGGAGGGGAGTACGGGGCGTTGGGCTGGAAG
GGCAGGGGCGAGGAGGTGGTTACCACCAAGACATAAAGAAGGAAAGACGA
CACCGACGCCAACGCTAACGGAAACAAAAAACACGT

protein sequence of NO12G00410.3

>NO12G00410.3-protein ID=NO12G00410.3-protein|Name=NO12G00410.3|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MGRDYYQVLGVSRGADDKEIKKAYRKEALRWHPDKNPDNQEQAQSKFQDI
SQAFEVLSDPEKKKIYDMYGEEGLKMGGGEGPPPNGPGGGMGGGMPEGFA
GFARAGGGGMGTGRGGGSFGGFSDPADIFAQFFGTSSAFDADGFSFDDLG
GGGGRGVGRRGGVGGMPGMSQSMGGMGGIPFGMGMGGGFGGPGASPPRKS
PPRKAEPVEYNFNVTLEDLHTGGKNKKMRITKKIWDAASGKFLHTTVDKD
IPIKKGWKNGTKITFEREGDELPGVIPADIVFVLNTKPHPRFEREGDDLV
YTATVPLEQALTGVEVTIQTLDGRTLKVGRWVAREGGREGMVEGRRWCVR
CLAINLIILLVHSLPLLLPPPLSPSI*

mRNA from alignment at chr12:147145..149877+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G00410.3 ID=NO12G00410.3|Name=NO12G00410.3|organism=Nannochloropsis oceanica|type=mRNA|length=2733bp|location=Sequence derived from alignment at chr12:147145..149877+ (Nannochloropsis oceanica)
ACAGACCGTGACCACGTGACCACGCTCTGGTCGAATCGTGTCCTTAGGTC
CTCCTTCTCCCGCAGGCCAACCAGTCTCAAGCGTGGCACCGTCAAGCCAA
GCGGAAGGGCACACACATAACGTGCTTGCCCTCCAAAACCAAGTCTAGGC
CACAGCCATAGCGACGCCAAGCAACCGTGGAAACCGCACCAGCAGTAGCA
GTAGCAGCGGCAACAGAAAGCGCTCGCGTGATACTCCGGACGGAGAACAA
GGCGCAAAGAGGGCAGGGAGCCGCAGTAGCAGCAGCAGCGGTACCAGGGG
CACCAGCACGAGACAAGGCAAGAACGACGGAGGAAGGATGGGAAGGGATT
ACTACCAAGTGCTAGGTGTCAGCCGTGGGGCAGACGACAAGGAGATCAAG
AAGGCGTACCGTAAGGAAGGTAAGAGAGGGAAGGATAGAGATGAGGGTAG
GAGGGGGGAGTTACTTACCGGACTACATGATCATCCGCTCACCCTCCCCT
TTTCCTTGCCTCCCTTTCTCCTTCCAGCACTCAGATGGCACCCCGACAAG
AACCCGGACAATCAAGAGCAGGCTCAAAGCAAATTTCAAGATATATCGCA
GGCGTTTGAAGTGCTCTCGGATCCGGAGAAGAAGAAGGTGAGGGGAGACA
GGAGGGAGGGATGAAAGGAGGGAAGGTCGCCAACAAACACCGGAGTGAGG
CTCTCATCGCAATTTTGCTTCTTCTACATTTTGCCATCCGGGGAGCAGAT
GACAGCCACAGAGACTTGACAAGGTAAAATGTCTCTCTTTTCAGCTCACC
TCTCTTCTTCTCCTGTCCTCCCTCCCCTCCCTGCAGATCTACGATATGTA
CGGGGAAGAGGGCTTGAAGATGGGGGGGGGAGAAGGGCCACCGCCCAATG
GGCCAGGGGGAGGAATGGGGGGAGGGATGCCTGAGGGATTTGCGGGATTT
GCACGGGCAGGAGGAGGAGGGATGGGGACAGGAAGGGGAGGAGGGTCCTT
TGGCGGATTTTCGGATCCCGCGGATATTTTTGCGCAGGTAGGGAAGGAGG
GAGGGAGGGGAGGAATGAGGGAGGGAGGGTGGTGAATCTTCTGTAGTACT
TGAGAAAGCGATTCTCATTTTGAAAATTGTACTTCATTGAAAGCCTCTTC
CTTTATGGGAGTATTGACCGTCATTCATCTTTCCCTCCCTCCTCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCACCGACAGTTTTTTGG
CACCTCGAGCGCCTTCGACGCGGACGGGTTCAGTTTCGACGATTTGGGAG
GAGGAGGAGGGAGGGGGGTAGGACGACGGGGAGGAGTCGGGGGGATGCCG
GGCATGTCTCAGAGCATGGGGGGGATGGGGGGGATACCCTTTGGTGAGGG
AGGGAGGGAGGGAGGGAGGGATGGATGGAGGGAGGGAGGGAGGGAGGGAT
GGAGGGATGGAGGGATGGAGGGATGGAGGGATGGAGGGATGGAGGGATGG
AGGGACGGAGGGAGGGAGGAGAGGGAGGAAAGGACATATTCGCCATTGTA
CGTGGTCTATTCACTCGTCATACTTATCTCTCCCGCCCGCCCTCCCTTCC
TCCCTCCCTTCTTCAGGTATGGGCATGGGCGGTGGTTTCGGCGGCCCTGG
TGCTTCTCCCCCTCGAAAAAGCCCGCCCCGAAAGGCCGAGCCCGTTGAAT
ACAATTTTAACGTCACCCTCGAGGATTTGCACACTGGGGGCAAGAACAAA
AAGATGCGCATCACCAAGAAGGTAAACGCCTCATTCCCCTCCATCATCAC
GTTCGCAGTCCTGTCCTCCCTTCCCTCCCTTCCCCCCTCCCTCCCTTTTC
TCCTTGTCGGCCTTCCTCCTTCCATCCTCTCCTCCCTCCCTCCTCTCCAT
GCTTCGCCCTCCCTTTCCGTTCAACCACGCCGATCCCGACACCCCTCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGATCTGGGACGCGGCCTC
AGGCAAATTTCTCCACACGACCGTGGACAAGGACATTCCTATCAAGAAAG
GGTGGAAAAATGGCACTAAAATCACCTTCGAGCGCGAGGGAGACGAGCTC
CCCGGTGTCATTCCCGCCGATATTGTCTTTGTCCTTAATACGAAGCCCCA
TCCTCGCTTTGAACGAGAGGGCGATGACCTGGTGTACACGGCAACGGTGC
CGTTGGAGCAGGCGTTGACAGGCGTGGAGGTAACAATTCAAACGTTAGAC
GGACGGACTTTGAAGGTAGGTAGGTGGGTAGCGAGGGAGGGAGGGAGGGA
GGGCATGGTGGAGGGAAGAAGGTGGTGTGTCCGTTGTCTTGCGATCAACT
TAATCATTCTCCTTGTCCACTCCCTCCCTCTGCTTCTCCCTCCACCTCTT
TCTCCCTCCATTTAGGTGAGCGAGCCGCATGTCACACCAGGGACAGTAAA
GATCCTCCGCGGGGAAGGCATGCCGTTGCAGAAATCACCAGATCGGAAGG
GAAATTTGAAAGTGAAGTTCAACATCGTCTTCCCGACCTTGACCGACTCT
CAGAAGCGGGAGATCCGGGCGGTATTGAAGGGAGGGAGGGGGTGAGAGGG
AAGGAGGGAGGGAGGGAGGAGGGGAGTACGGGGCGTTGGGCTGGAAGGGC
AGGGGCGAGGAGGTGGTTACCACCAAGACATAAAGAAGGAAAGACGACAC
CGACGCCAACGCTAACGGAAACAAAAAACACGT

Coding sequence (CDS) from alignment at chr12:147145..149877+

>NO12G00410.3 ID=NO12G00410.3|Name=NO12G00410.3|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr12:147145..149877+ (Nannochloropsis oceanica)
ATGGGAAGGGATTACTACCAAGTGCTAGGTGTCAGCCGTGGGGCAGACGA
CAAGGAGATCAAGAAGGCGTACCGTAAGGAAGCACTCAGATGGCACCCCG
ACAAGAACCCGGACAATCAAGAGCAGGCTCAAAGCAAATTTCAAGATATA
TCGCAGGCGTTTGAAGTGCTCTCGGATCCGGAGAAGAAGAAGATCTACGA
TATGTACGGGGAAGAGGGCTTGAAGATGGGGGGGGGAGAAGGGCCACCGC
CCAATGGGCCAGGGGGAGGAATGGGGGGAGGGATGCCTGAGGGATTTGCG
GGATTTGCACGGGCAGGAGGAGGAGGGATGGGGACAGGAAGGGGAGGAGG
GTCCTTTGGCGGATTTTCGGATCCCGCGGATATTTTTGCGCAGTTTTTTG
GCACCTCGAGCGCCTTCGACGCGGACGGGTTCAGTTTCGACGATTTGGGA
GGAGGAGGAGGGAGGGGGGTAGGACGACGGGGAGGAGTCGGGGGGATGCC
GGGCATGTCTCAGAGCATGGGGGGGATGGGGGGGATACCCTTTGGTATGG
GCATGGGCGGTGGTTTCGGCGGCCCTGGTGCTTCTCCCCCTCGAAAAAGC
CCGCCCCGAAAGGCCGAGCCCGTTGAATACAATTTTAACGTCACCCTCGA
GGATTTGCACACTGGGGGCAAGAACAAAAAGATGCGCATCACCAAGAAGA
TCTGGGACGCGGCCTCAGGCAAATTTCTCCACACGACCGTGGACAAGGAC
ATTCCTATCAAGAAAGGGTGGAAAAATGGCACTAAAATCACCTTCGAGCG
CGAGGGAGACGAGCTCCCCGGTGTCATTCCCGCCGATATTGTCTTTGTCC
TTAATACGAAGCCCCATCCTCGCTTTGAACGAGAGGGCGATGACCTGGTG
TACACGGCAACGGTGCCGTTGGAGCAGGCGTTGACAGGCGTGGAGGTAAC
AATTCAAACGTTAGACGGACGGACTTTGAAGGTAGGTAGGTGGGTAGCGA
GGGAGGGAGGGAGGGAGGGCATGGTGGAGGGAAGAAGGTGGTGTGTCCGT
TGTCTTGCGATCAACTTAATCATTCTCCTTGTCCACTCCCTCCCTCTGCT
TCTCCCTCCACCTCTTTCTCCCTCCATTTAG

Synonyms

Publications