NO12G00150.1, NO12G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00150.1
Unique NameNO12G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1161
Alignment locationchr12:36851..38011 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:36851..38011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00150NO12G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00150.1NO12G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00150.1.cds1NO12G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00150.1 ID=NO12G00150.1|Name=NO12G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
ATGGAGAACAACCTTCTTCCCCCCGGGTCCCCTAAACCCTGCGATGGTTA
CTGGGTCCACTTTATCATTGTGTGCATAATTGTCTTCTCGACTACGGGGT
ATATGGTGGTGGAATTCTACAGTTCTAGCAAGCATTCTCCGAAAGAAGAC
GACCCCGAGGCCGTTATTGGCACCATAGTGGGGACTGGGCTGGATCAGCC
GACCGCGGGCGTGATTGCGGTGGTGCCCCTCTGGACTGTGACGCAGGCGG
CGAGACTGGAGGAAGAGAACGCTAAGAAGGCGATGTTTGCCAGGATGAAA
AGCTTGTTGATGGAGCTCTCGATCCTCTTTGTAATGTGCATGGCCTGCCT
GCTGGTCAGCTCGATACTTTACACAATCGGAACGTACGATGTGGGGTCCA
TGTTGATGGCGGCCACGCTAACTCGCAAGTATGTGGACGAGCAAGACGTC
AAGACCGCCATTGACCTTTCGAAGGGCACCAACGGGAAGAACAAGCGCCA
GTATAAGGAGCAGCGAGCCTTGTATCCCACTTTTTTAGGCCGCACATTTC
TGGTGCCGATACTGCGTGAATATGAGAATTGGGATTTTGTCGATACCTTC
ATGGCCAAAGAATGGGGTAGGATGGGCGACAACGAGCTAATTAAAGACGA
GGGTTTGATCGGCAGCGTTTTGGCTGACCTCTTTAGCCAGGAGGCGGAGG
GCGAGGCAGCCCGGAGCCCCATCTATTCGACGGTCTTTGAAGAGCTCGGT
GGGACAGTTGTTGGTGGACTGCTGGCTAAGAACGCGGAGGGGGCGGAGGC
TGTGACGCCTTTCACTATGATTAAGATCACCAAGCAGCGTTGGAATCTGG
CCCGTGTTCTCGGCATCACCTTATCGGTGCGCTGCCAGCGAGGCGTCCCT
TCATCTACATCCACGACGTCTTCCGCCCGATTTGGCCGCCTCCGGAGCGA
GTCAGTCTTCTCCCGCGGCGCTTCTTCCTCCACCATCGACGTGGACGGGG
CGGGAGCGCTGGTGGGCGATGCCTGTTCTACGTTGAAAAAGGGGGACGTG
ACTTGTACCAAGGTAAACAATTTTTACTGGAATCTTAGGCGTGTGTTTTC
GGTGAAGAGCCGCAGCCCCGTCTCCTCCCGTGCAAGCTCTCAGTCTATAT
GTGTGAAGTAA
back to top

protein sequence of NO12G00150.1

>NO12G00150.1-protein ID=NO12G00150.1-protein|Name=NO12G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MENNLLPPGSPKPCDGYWVHFIIVCIIVFSTTGYMVVEFYSSSKHSPKED
DPEAVIGTIVGTGLDQPTAGVIAVVPLWTVTQAARLEEENAKKAMFARMK
SLLMELSILFVMCMACLLVSSILYTIGTYDVGSMLMAATLTRKYVDEQDV
KTAIDLSKGTNGKNKRQYKEQRALYPTFLGRTFLVPILREYENWDFVDTF
MAKEWGRMGDNELIKDEGLIGSVLADLFSQEAEGEAARSPIYSTVFEELG
GTVVGGLLAKNAEGAEAVTPFTMIKITKQRWNLARVLGITLSVRCQRGVP
SSTSTTSSARFGRLRSESVFSRGASSSTIDVDGAGALVGDACSTLKKGDV
TCTKVNNFYWNLRRVFSVKSRSPVSSRASSQSICVK*
back to top

mRNA from alignment at chr12:36851..38011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00150.1 ID=NO12G00150.1|Name=NO12G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at chr12:36851..38011+ (Nannochloropsis oceanica)
ATGGAGAACAACCTTCTTCCCCCCGGGTCCCCTAAACCCTGCGATGGTTA
CTGGGTCCACTTTATCATTGTGTGCATAATTGTCTTCTCGACTACGGGGT
ATATGGTGGTGGAATTCTACAGTTCTAGCAAGCATTCTCCGAAAGAAGAC
GACCCCGAGGCCGTTATTGGCACCATAGTGGGGACTGGGCTGGATCAGCC
GACCGCGGGCGTGATTGCGGTGGTGCCCCTCTGGACTGTGACGCAGGCGG
CGAGACTGGAGGAAGAGAACGCTAAGAAGGCGATGTTTGCCAGGATGAAA
AGCTTGTTGATGGAGCTCTCGATCCTCTTTGTAATGTGCATGGCCTGCCT
GCTGGTCAGCTCGATACTTTACACAATCGGAACGTACGATGTGGGGTCCA
TGTTGATGGCGGCCACGCTAACTCGCAAGTATGTGGACGAGCAAGACGTC
AAGACCGCCATTGACCTTTCGAAGGGCACCAACGGGAAGAACAAGCGCCA
GTATAAGGAGCAGCGAGCCTTGTATCCCACTTTTTTAGGCCGCACATTTC
TGGTGCCGATACTGCGTGAATATGAGAATTGGGATTTTGTCGATACCTTC
ATGGCCAAAGAATGGGGTAGGATGGGCGACAACGAGCTAATTAAAGACGA
GGGTTTGATCGGCAGCGTTTTGGCTGACCTCTTTAGCCAGGAGGCGGAGG
GCGAGGCAGCCCGGAGCCCCATCTATTCGACGGTCTTTGAAGAGCTCGGT
GGGACAGTTGTTGGTGGACTGCTGGCTAAGAACGCGGAGGGGGCGGAGGC
TGTGACGCCTTTCACTATGATTAAGATCACCAAGCAGCGTTGGAATCTGG
CCCGTGTTCTCGGCATCACCTTATCGGTGCGCTGCCAGCGAGGCGTCCCT
TCATCTACATCCACGACGTCTTCCGCCCGATTTGGCCGCCTCCGGAGCGA
GTCAGTCTTCTCCCGCGGCGCTTCTTCCTCCACCATCGACGTGGACGGGG
CGGGAGCGCTGGTGGGCGATGCCTGTTCTACGTTGAAAAAGGGGGACGTG
ACTTGTACCAAGGTAAACAATTTTTACTGGAATCTTAGGCGTGTGTTTTC
GGTGAAGAGCCGCAGCCCCGTCTCCTCCCGTGCAAGCTCTCAGTCTATAT
GTGTGAAGTAA
back to top

Coding sequence (CDS) from alignment at chr12:36851..38011+

>NO12G00150.1 ID=NO12G00150.1|Name=NO12G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at chr12:36851..38011+ (Nannochloropsis oceanica)
ATGGAGAACAACCTTCTTCCCCCCGGGTCCCCTAAACCCTGCGATGGTTA
CTGGGTCCACTTTATCATTGTGTGCATAATTGTCTTCTCGACTACGGGGT
ATATGGTGGTGGAATTCTACAGTTCTAGCAAGCATTCTCCGAAAGAAGAC
GACCCCGAGGCCGTTATTGGCACCATAGTGGGGACTGGGCTGGATCAGCC
GACCGCGGGCGTGATTGCGGTGGTGCCCCTCTGGACTGTGACGCAGGCGG
CGAGACTGGAGGAAGAGAACGCTAAGAAGGCGATGTTTGCCAGGATGAAA
AGCTTGTTGATGGAGCTCTCGATCCTCTTTGTAATGTGCATGGCCTGCCT
GCTGGTCAGCTCGATACTTTACACAATCGGAACGTACGATGTGGGGTCCA
TGTTGATGGCGGCCACGCTAACTCGCAAGTATGTGGACGAGCAAGACGTC
AAGACCGCCATTGACCTTTCGAAGGGCACCAACGGGAAGAACAAGCGCCA
GTATAAGGAGCAGCGAGCCTTGTATCCCACTTTTTTAGGCCGCACATTTC
TGGTGCCGATACTGCGTGAATATGAGAATTGGGATTTTGTCGATACCTTC
ATGGCCAAAGAATGGGGTAGGATGGGCGACAACGAGCTAATTAAAGACGA
GGGTTTGATCGGCAGCGTTTTGGCTGACCTCTTTAGCCAGGAGGCGGAGG
GCGAGGCAGCCCGGAGCCCCATCTATTCGACGGTCTTTGAAGAGCTCGGT
GGGACAGTTGTTGGTGGACTGCTGGCTAAGAACGCGGAGGGGGCGGAGGC
TGTGACGCCTTTCACTATGATTAAGATCACCAAGCAGCGTTGGAATCTGG
CCCGTGTTCTCGGCATCACCTTATCGGTGCGCTGCCAGCGAGGCGTCCCT
TCATCTACATCCACGACGTCTTCCGCCCGATTTGGCCGCCTCCGGAGCGA
GTCAGTCTTCTCCCGCGGCGCTTCTTCCTCCACCATCGACGTGGACGGGG
CGGGAGCGCTGGTGGGCGATGCCTGTTCTACGTTGAAAAAGGGGGACGTG
ACTTGTACCAAGGTAAACAATTTTTACTGGAATCTTAGGCGTGTGTTTTC
GGTGAAGAGCCGCAGCCCCGTCTCCTCCCGTGCAAGCTCTCAGTCTATAT
GTGTGAAGTAA
back to top
Synonyms
Publications