NO11G03350.1, NO11G03350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03350.1
Unique NameNO11G03350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr11:1069381..1071281 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1069381..1071281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03350.1 vs.
Match: EWM24858.1 (chromatin modifying protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 312.8 bits (800), Expect = 8.800e-82
Identity = 162/186 (87.10%), Postives = 175/186 (94.09%), Query Frame = 0 
Query:    1 MNRIFGQKKAQAPMPTLGEASGKIDGRVKGLDEKIKGMEDELRKYQGLIKRSTGAAQANHKRRALDVLKRKKMFEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKTEVKKVKIDDIEDLTDDLADMMEDMNEVNDALGRNYGVSDDIDEADLDAELAGLEDELEGVGEEEADAAG 187
            MNRIFGQKK QAP P+LG+ASGKIDGR+KGLD+KIK ++DELRK+QGLIKRS+GA QANHKRRA+DVLKRKKM+EQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALK E KKVKIDDIEDLTDDLADMMEDMNE+NDALGRNYGVSD+IDEADLDAELAGLEDELEG+GE E    G
Sbjct:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRG 186
The following BLAST results are available for this feature:
BLAST of NO11G03350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24858.18.800e-8287.10chromatin modifying protein 5 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03350NO11G03350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03350.1NO11G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03350.1.cds1NO11G03350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03350.1.cds2NO11G03350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03350.1.cds3NO11G03350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03350.1.cds4NO11G03350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03350.1.cds5NO11G03350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03350.1.cds6NO11G03350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03350.1.cds7NO11G03350.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03350.1 ID=NO11G03350.1|Name=NO11G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGAATCGTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCT
GGGCGAGGCATCCGGGAAAATTGATGGCCGCGTCAAGGGACTCGACGAAA
AGATCAAGGGCATGGAAGACGAGTTGAGGAAGTACCAAGGTTTGATCAAG
AGAAGCACGGGTGCGGCACAAGCCAATCATAAGCGACGGGCCCTCGATGT
TCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGGGATCAGCTCGCGGCCC
AGTCGTTTAATGTCGATCAGACAAATTTCGCCTTGGAGAGCGTCAAGGAC
ACCATCACCACGGTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGAC
GGAGGTCAAGAAGGTCAAGATCGACGACATTGAGGACCTGACTGACGACC
TGGCCGACATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGT
AATTACGGCGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCT
GGCCGGGTTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGCTGACG
CCGCCGGGGCGACTGCGGAGACCACACCGTCGTATCTCCTGCCCAGCGAG
CCTCTCAACACGCCTGAGCCCAAGGCGACCACAGACGAGTTCGGTCTGCC
CGTCGCGCCGCTGCACAATTAG
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protein sequence of NO11G03350.1

>NO11G03350.1-protein ID=NO11G03350.1-protein|Name=NO11G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MNRIFGQKKAQAPMPTLGEASGKIDGRVKGLDEKIKGMEDELRKYQGLIK
RSTGAAQANHKRRALDVLKRKKMFEQQRDQLAAQSFNVDQTNFALESVKD
TITTVDAMKGAHKALKTEVKKVKIDDIEDLTDDLADMMEDMNEVNDALGR
NYGVSDDIDEADLDAELAGLEDELEGVGEEEADAAGATAETTPSYLLPSE
PLNTPEPKATTDEFGLPVAPLHN*
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mRNA from alignment at chr11:1069381..1071281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03350.1 ID=NO11G03350.1|Name=NO11G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp|location=Sequence derived from alignment at chr11:1069381..1071281+ (Nannochloropsis oceanica)
ATGAATCGTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCT
GGGTAAGAAAAAGCGGGTTTGAGGGAGGGACCGAGGCAAGGGAGGGACCG
AGGCAAGGGAAGGAGCCACGTAAAAAGGCAGGGCATGACAGGATGCTTGA
GACTGCGGTATTACAAGGCATACAGACATAAATAATCCCTATGCACCTCC
ATTTGGAGTGCATGGAAGTGGAAGAGTGAGTGAGAATTTGTCTTGTAGAG
GCGAATCACGTCAACCTAGCCAGGGTCTCGCTTGCCTGCTGGCGCATAAG
GCAAAGCGAACGGCAAACTTGCACTCCCTCACACACCCACTCTATTCCTA
TCCGTCGCTTATATCTTTACAGGCGAGGCATCCGGGAAAATTGATGGCCG
CGTCAAGGGACTCGACGAAAAGGTAGGAATACTACACTGGGTTGACTCAA
ACCGCTTTTTCTACCTCTCATTCATTCCTCCCTCTTTTCCTCCTTCCTTT
CTACCTCCCCCTTGTCACACTTTTAGATCAAGGGCATGGAAGACGAGTTG
AGGAAGTACCAAGGTTTGATCAAGAGAAGCACGGGTGCGGCACAAGCCAA
TCATAAGCGACGGGCCCTCGATGTACGTCTTTAGTGGGAGGGAGGAAGTG
AGGGAGGGAGCGAGGATGAACACAAAATGGGCGAGCGAGACGTGATCGTG
AGTGTGTTACAGGATCATGCCCTGATGCTATATTGTCTTAACCACGTGTG
TATGTGTGCCATCATTATCGCATAATCACAAGCATTCTGCCATCGTCTCA
ACCCTTGGGTGGATGGGTGACGTACTCATTGTCGCACCCCTCCCTCCCTC
CCTCCCTCCCTCTCTCCCTGCCTCCCTCCCTCTCTTTTTCCTTCCCGCCT
TCCCAATCCCACAGGTTCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGG
GATCAGCTCGCGGCCCAGTCGTTTAATGTCGATCAGACAAATTTCGCCTT
GGAGAGCGTCAAGGTAAGACTAAGACATTACTCGGCCTCACGCCACCACC
AGCCTTCTTACATTCCTTTCTCCCTCCTCACTCCCCAGGACACCATCACC
ACGGTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGACGGAGGTCAA
GAAGGTCAAGATCGACGACATTGAGGTACAAAGGGAGAGAGCGCAAGCCG
AGGGAGGGATCAAGGGAAGGAGGGGGGGGGGAGGGTGATGCCGCCGCCGG
GTCTCTGGTTTAAAAAAAAGAGGGTTGATAAGAAGGCTCCATCACTCCTG
CAGAGCGTTCTCGCTACCAGTAGAAGAAGCGTATTTTGCAAGTATTGAGG
CATGGAAGCATCGCATTGCCTTGAGCTCGTTAGACCAAACACGCACCGTC
CGCCCTCCTTCCCTCCCTCCCTCCCTCCCCAGGACCTGACTGACGACCTG
GCCGACATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGTAA
TTACGGCGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCTGG
CCGGGTTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGGTGAGGCA
TGCGGGAGGGGAGAGGGTGGAGAGACGGACGGGAGGGAGGGAGGAGGGGA
TGGGGATGAGATCACCCACCTTGGTGTTTCTCAGCTGCCGAAGCCGTCAT
TGACTTATTTCTCACGATCCCTCCCTCCCTCCCTCCTGTCCCCCTTCCTC
GCCTTATCACCTCTTCCTCACAGCTGACGCCGCCGGGGCGACTGCGGAGA
CCACACCGTCGTATCTCCTGCCCAGCGAGCCTCTCAACACGCCTGAGCCC
AAGGCGACCACAGACGAGTTCGGTCTGCCCGTCGCGCCGCTGCACAATTA
G
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Coding sequence (CDS) from alignment at chr11:1069381..1071281+

>NO11G03350.1 ID=NO11G03350.1|Name=NO11G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr11:1069381..1071281+ (Nannochloropsis oceanica)
ATGAATCGTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCT
GGGCGAGGCATCCGGGAAAATTGATGGCCGCGTCAAGGGACTCGACGAAA
AGATCAAGGGCATGGAAGACGAGTTGAGGAAGTACCAAGGTTTGATCAAG
AGAAGCACGGGTGCGGCACAAGCCAATCATAAGCGACGGGCCCTCGATGT
TCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGGGATCAGCTCGCGGCCC
AGTCGTTTAATGTCGATCAGACAAATTTCGCCTTGGAGAGCGTCAAGGAC
ACCATCACCACGGTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGAC
GGAGGTCAAGAAGGTCAAGATCGACGACATTGAGGACCTGACTGACGACC
TGGCCGACATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGT
AATTACGGCGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCT
GGCCGGGTTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGCTGACG
CCGCCGGGGCGACTGCGGAGACCACACCGTCGTATCTCCTGCCCAGCGAG
CCTCTCAACACGCCTGAGCCCAAGGCGACCACAGACGAGTTCGGTCTGCC
CGTCGCGCCGCTGCACAATTAG
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Synonyms
Publications