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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:958777..961399 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03060.1 vs.
Match: XP_005854158.1 (nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 [Nannochloropsis gaditana CCMP526]; EKU22200.1 nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 974.2 bits (2517), Expect = 2.100e-280 Identity = 515/687 (74.96%), Postives = 580/687 (84.43%), Query Frame = 0
Query: 1 MQSSSKSLRRSGLLLLFPCLFWGVVAFLPAPVLPTRDPSSSSSCLHAENNNNKEPNP----LSKLFTPPATTNPFASFGQQVTSFFEKLMSGGGLPPA-SSKALPPPTPKPRRRTGGPVSVVFGATGRAGREIVQALLKEGHDVIAAVRNESKLNDVFGSYALTGTTPAASGQGLLDYVTGVDVTNPATLMEGDVPDVLKEAAHVVVALGPVGGLQPGGGFGFFPGLTSEDVDYKGVVKVVDAVAAAMGAGKKG----GKKVSMEEEEEKRQTLFRFETPEDVAKWQRLDDVIMGGRSSSTLQLNAEKGYATYTGSLVVEDGGFCGTRASGAGVSVDLSGFDGVRLRVRGDGRRYKLNVKTTDTLASENVYQAAFDTMDLEE-GE---GWQTITLPFHRFFPVVRNRVDYRGAPLQSSSQVAVSFGLVYSRFEFNRQANPYYAPGAFALAMQELSLYRSQRPAIVLVSSAGAERNAKVETEEDRKKEIPIVMLNPGGILNWKYRAETYLRASSLPYTILRPCGLVPEKAFGDEPPTGKLQAGQGDVITGRLTRQDLGSAVAASLASPFSVGKTLEIRRDEAADANSKAGVGKRERTTDMTAIELFQPLVKDKDRAVSGQFNLLPFPEAVDPPAPVSKERAQEILNDPRVKAQQERDRALVAEKGMKKEEGGGGRVEEGESPAVSVGA 675
M SS +R L+LLF CL GVVAFLPA VLPTR+ SS S LHAEN +N + P L+ LF+PP+ TNPF + G+Q+T FFEKL G A +S+ALPPP P RR TGGPVSVVFGATGRAGREIVQALL+EGHDV+AAVRNESKLN+VFG+ AL+G TPA+ G GLLDY++G+DVTN ATL G VP VLKEA HVVVALGPVGG+QPGGGFGFFPGLTSEDVD+KGV KV+DAV A G K+G GKK + E EE+++TLFRFETPEDVAKWQRLDDVIMGG+SSS+L+L+ EKGYATYTGSLVVE GGFCGTRASG SVDLSGFDGV LRVRGDG RYKLN+KTT+TLASENVYQAAFDT+ L++ GE GWQTIT+PFHRF+PVVRNRVDY+ APLQ SSQ AVS GLVYSRFEFNRQANPYY PGAF+L+++E++LYRS+RP++VLVSSAGAERNAKVETEEDRK EIPIVMLNPGGILNWKYRAETYLRAS LPYTILRPCGLVPEKAFGDEP TGKLQAGQGD ITGRLTRQDLG AVAA+LASP+S GKT+EIRRDEAADAN+ GVG+R RTT +TA+ELFQPLV DKDRAVSG LLPFPEAVDPP VS ERA+EILNDPRVKAQQ+RDRALV ++K +GGGGRVEE + AVS+ A
Sbjct: 1 MLSSLSGVRCVFLVLLFICLSGGVVAFLPASVLPTRE-SSFPSRLHAENKHNGDNKPGSNGLNTLFSPPSMTNPFEALGKQLTFFFEKLTGGTDTNSAMASRALPPPPPSVRR-TGGPVSVVFGATGRAGREIVQALLREGHDVVAAVRNESKLNEVFGASALSGATPASPGHGLLDYISGIDVTNAATLSSGKVPAVLKEACHVVVALGPVGGVQPGGGFGFFPGLTSEDVDFKGVTKVIDAVVDAKGVVKEGAGEGGKKKAAGEVEERKRTLFRFETPEDVAKWQRLDDVIMGGQSSSSLELDREKGYATYTGSLVVEGGGFCGTRASGGDASVDLSGFDGVTLRVRGDGHRYKLNLKTTETLASENVYQAAFDTLPLQDVGEGAGGWQTITIPFHRFYPVVRNRVDYKAAPLQPSSQAAVSLGLVYSRFEFNRQANPYYDPGAFSLSLEEIALYRSRRPSLVLVSSAGAERNAKVETEEDRKTEIPIVMLNPGGILNWKYRAETYLRASPLPYTILRPCGLVPEKAFGDEPSTGKLQAGQGDTITGRLTRQDLGLAVAAALASPYSAGKTMEIRRDEAADANAMTGVGRRPRTTAVTALELFQPLVADKDRAVSGTSGLLPFPEAVDPPQEVSPERAKEILNDPRVKAQQDRDRALVESGALQKGQGGGGRVEEEPAAAVSMTA 685
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03060.1 ID=NO11G03060.1|Name=NO11G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp ATGCAATCGTCATCCAAAAGTCTGCGCCGCAGCGGATTGCTCCTTCTCTT TCCCTGCTTGTTCTGGGGCGTTGTCGCTTTCCTCCCGGCCCCGGTTTTAC CCACCCGGGACCCCTCCTCCTCGTCCTCGTGCCTGCACGCGGAGAACAAC AACAATAAAGAGCCGAACCCACTGAGCAAACTCTTTACTCCGCCCGCGAC GACCAACCCATTTGCGTCCTTCGGACAGCAAGTCACGTCGTTCTTCGAGA AGCTCATGAGCGGTGGCGGGTTGCCTCCTGCTTCCTCTAAAGCCCTTCCC CCCCCGACACCCAAACCCCGCCGTCGCACCGGTGGGCCCGTTTCGGTTGT CTTTGGTGCCACTGGTCGGGCGGGGCGCGAGATCGTGCAAGCCTTGTTGA AAGAGGGCCATGACGTCATTGCCGCGGTGAGGAATGAGTCGAAACTGAAC GATGTCTTTGGCTCCTACGCCCTGACGGGCACGACGCCCGCGGCCTCGGG GCAAGGACTGTTAGATTATGTGACGGGTGTGGACGTGACAAATCCAGCGA CTTTAATGGAAGGAGACGTACCGGACGTTTTAAAAGAAGCGGCACATGTG GTCGTGGCCTTGGGACCCGTTGGGGGACTGCAGCCCGGGGGAGGTTTTGG ATTTTTCCCAGGACTGACCAGTGAAGATGTGGACTATAAGGGTGTGGTGA AGGTGGTAGATGCCGTGGCGGCCGCCATGGGTGCAGGGAAGAAGGGGGGG AAGAAGGTTTCGATGGAGGAGGAGGAGGAGAAGAGGCAGACATTGTTTCG GTTTGAAACACCTGAGGACGTAGCCAAGTGGCAGCGGTTGGATGACGTGA TCATGGGCGGCCGTTCTTCCTCCACCCTCCAATTAAACGCCGAAAAGGGC TATGCTACCTACACCGGGAGCTTGGTGGTTGAGGATGGGGGGTTTTGCGG TACCAGGGCCTCGGGGGCAGGAGTCTCGGTGGACCTGTCAGGCTTTGACG GCGTCCGTTTACGTGTCCGGGGGGATGGACGACGTTACAAATTAAACGTC AAAACGACCGATACCCTCGCCTCGGAGAATGTGTACCAAGCCGCGTTTGA CACCATGGACCTGGAGGAGGGGGAGGGCTGGCAGACGATTACTCTACCTT TCCATCGGTTCTTCCCCGTGGTCCGGAATCGGGTTGATTACAGAGGAGCC CCCCTCCAGTCTTCCTCTCAGGTAGCCGTTAGCTTCGGTCTCGTCTATTC CCGGTTTGAATTTAATCGACAAGCGAATCCTTACTATGCCCCCGGGGCGT TTGCGTTGGCCATGCAGGAGCTGTCGCTGTACCGCAGCCAAAGGCCGGCG ATTGTGTTGGTGTCGTCGGCGGGGGCGGAACGCAACGCCAAGGTGGAGAC AGAGGAGGATAGGAAAAAGGAGATTCCAATCGTCATGCTTAATCCTGGCG GCATCCTCAACTGGAAGTATCGCGCCGAAACCTACCTTCGTGCGTCCTCC CTCCCCTATACCATCCTCCGACCCTGCGGCCTGGTTCCCGAGAAGGCATT TGGGGACGAGCCTCCCACCGGTAAGCTGCAAGCAGGGCAAGGCGACGTCA TTACGGGGAGGTTGACGAGGCAGGACCTGGGCTCAGCAGTAGCCGCATCG CTGGCTTCGCCGTTCTCGGTGGGCAAGACGTTGGAAATCAGGAGGGACGA GGCGGCCGATGCGAATTCCAAGGCAGGGGTAGGGAAGAGGGAGAGGACGA CTGACATGACGGCCATTGAGCTCTTCCAACCACTGGTGAAAGACAAAGAC CGCGCCGTGAGCGGACAATTTAATCTGCTCCCATTCCCGGAGGCGGTGGA TCCACCCGCGCCGGTGAGTAAAGAGAGGGCCCAAGAGATTTTGAACGATC CGCGAGTGAAGGCACAGCAGGAAAGGGACCGGGCTTTGGTGGCGGAGAAG GGAATGAAGAAGGAGGAGGGGGGAGGGGGAAGGGTGGAGGAGGGAGAGTC ACCTGCTGTGTCGGTGGGTGCCGCGAAATAA back to topprotein sequence of NO11G03060.1 >NO11G03060.1-protein ID=NO11G03060.1-protein|Name=NO11G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp MQSSSKSLRRSGLLLLFPCLFWGVVAFLPAPVLPTRDPSSSSSCLHAENN NNKEPNPLSKLFTPPATTNPFASFGQQVTSFFEKLMSGGGLPPASSKALP PPTPKPRRRTGGPVSVVFGATGRAGREIVQALLKEGHDVIAAVRNESKLN DVFGSYALTGTTPAASGQGLLDYVTGVDVTNPATLMEGDVPDVLKEAAHV VVALGPVGGLQPGGGFGFFPGLTSEDVDYKGVVKVVDAVAAAMGAGKKGG KKVSMEEEEEKRQTLFRFETPEDVAKWQRLDDVIMGGRSSSTLQLNAEKG YATYTGSLVVEDGGFCGTRASGAGVSVDLSGFDGVRLRVRGDGRRYKLNV KTTDTLASENVYQAAFDTMDLEEGEGWQTITLPFHRFFPVVRNRVDYRGA PLQSSSQVAVSFGLVYSRFEFNRQANPYYAPGAFALAMQELSLYRSQRPA IVLVSSAGAERNAKVETEEDRKKEIPIVMLNPGGILNWKYRAETYLRASS LPYTILRPCGLVPEKAFGDEPPTGKLQAGQGDVITGRLTRQDLGSAVAAS LASPFSVGKTLEIRRDEAADANSKAGVGKRERTTDMTAIELFQPLVKDKD RAVSGQFNLLPFPEAVDPPAPVSKERAQEILNDPRVKAQQERDRALVAEK GMKKEEGGGGRVEEGESPAVSVGAAK* back to topmRNA from alignment at chr11:958777..961399+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03060.1 ID=NO11G03060.1|Name=NO11G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2623bp|location=Sequence derived from alignment at chr11:958777..961399+ (Nannochloropsis oceanica) ATGCAATCGTCATCCAAAAGTCTGCGCCGCAGCGGATTGCTCCTTCTCTT
TCCCTGCTTGTTCTGGGGCGTTGTCGCTTTCCTCCCGGCCCCGGTTTTAC
CCACCCGGGACCCCTCCTCCTCGTCCTCGTGCCTGCACGCGGAGAACAAC
AACAATAAAGAGCCGAACCCACTGAGCAAACTCTTTACTCCGCCCGCGAC
GACCAACCCATTTGCGTCCTTCGGACAGCAAGTCACGTCGTTCTTCGAGA
AGCTCATGAGCGGTGGCGGGTTGCCTCCTGCTTCCTCTAAAGCCCTTCCC
CCCCCGACACCCAAACCCCGCCGTCGCACCGGTGGGCCCGTTTCGGTTGT
CTTTGGTGCCACTGGTCGGGCGGGGCGCGAGATCGTGCAAGCCTTGTTGA
AAGAGGGCCATGACGTCATTGCCGCGGTGAGGAATGAGTCGAAACTGAAC
GATGTCTTTGGCTCCTACGCCCTGACGGGCACGACGCCCGCGGCCTCGGG
GCAAGGACTGTTAGATTATGTGACGGGTGTGGACGTGACAAATCCAGCGA
CTTTAATGGAAGGAGACGTACCGGACGTTTTAAAAGAAGCGGCACATGTG
GTCGTGGCCTTGGGACCCGTTGGGGGACTGCAGCCCGGGGGAGGTTTTGG
ATTTTTCCCAGGACTGACCAGTGAAGATGTGGACTATAAGGGTGTGGTGA
AGGTGGTAGATGCCGTGGCGGCCGCCATGGGTGCAGGGAAGAAGGGGGGG
AAGAAGGTTTCGATGGAGGAGGAGGAGGAGAAGAGGCAGACATTGTTTCG
GTTTGAAACACCTGAGGACGTAGCCAAGTGGCAGCGGTTGGATGACGTGA
TCATGGGGTGAGTAAGACGTGAGAAAGGAAGGGAGTGAGTGAGAGGGAGA
GCTAGTTGGGAGGAAGAGGGGCATCATGCAGGGGGGATGTCACAAGCATG
CCTGACAGCGTTACCCCCCAGACCTCACACATTTCTCCCCGACCTTTGCT
CATTTTCCCCGCTTCCACGCAGCGGCCGTTCTTCCTCCACCCTCCAATTA
AACGCCGAAAAGGGCTATGCTACCTACACCGGGAGCTTGGTGGTTGAGGA
TGGGGGGTTTTGCGGTACCAGGGCCTCGGGGGCAGGAGTCTCGGTGGACC
TGTCAGGCTTTGACGGCGTCCGTTTACGTGTCCGGGGGGATGGACGACGT
TACAAATTAAACGTCAAAACGACCGATACCCTCGCCTCGGAGAATGTGTA
CCAAGCCGCGTTTGACACCATGGACCTGGAGGAGGGGGAGGGCTGGCAGA
CGATTACTCTACCTTTCCATCGGTTCTTCCCCGTGGTCCGGAATCGGGTT
GATTACAGAGGAGCCCCCCTCCAGTCTTCCTCTCAGGTAGCCGTTAGCTT
CGGTCTCGTCTATTCCCGGTTTGAATTTAATCGACAAGCGAATCCTTACT
ATGCCCCCGGGGCGTTTGCGTTGGCCATGCAGGAGCTGTCGCTGTACCGC
AGCCAAAGGCCGGCGATTGTGTTGGTGTCGTCGGCGGGGGCGGAACGCAA
CGCCAAGGTGGAGACAGAGGAGGATAGGAAAAAGGTAGGTCGCCGTGTCC
TTCGCGCCTTCTTTCCTGCACTTCCTCCCTCCTCTCCTCCCTTCAATCGT
CCAAAAATGCTTGTCATGCATATTTTCACCTCCCTCCCTCCCTCTCTTCT
TCGTAGGAGATTCCAATCGTCATGCTTAATCCTGGCGGCATCCTCAACTG
GAAGTATCGGTAAGCCACGAGTGGAGAAGGGAGGGCAGAAGGGAGGGAGG
GAGGGAGGGAAAGAGGGAGGCTCCGACAGGCAGGGCGCTAGACCTCCCTC
CCTCCACGTCCACGTCCCTCAGCACGGACGGATGCCTTTTTGCCCCCACC
TGATTTCCGATGCCACTCCTCCTCGATGTGCTGGCACATCACCATTCAAG
GAATAGAATTTGGGACCAACAGTTTTTCGGCAACCACTATCGCTCACTCC
TCCCCTTCCTCCTCCTCCCTCCTTCCCTCCCTCGCCTCCTCCTCCCTCCT
TCTCTCCCTCGCAGCGCCGAAACCTACCTTCGTGCGTCCTCCCTCCCCTA
TACCATCCTCCGACCCTGCGGCCTGGTTCCCGAGAAGGCATTTGGGGACG
AGCCTCCCACCGGTAAGCTGCAAGCAGGGCAAGGCGACGTCATTACGGGG
AGGTTGACGAGGCAGGACCTGGGCTCAGCAGTAGCCGCATCGCTGGCTTC
GCCGTTCTCGGTGGGCAAGACGTTGGAAATCAGGAGGGACGAGGCGGCCG
ATGCGAATTCCAAGGCAGGGGTAGGGAAGAGGGAGAGGACGACTGACATG
ACGGCCATTGAGCTCTTCCAACCACTGGTGAAAGACAAAGACCGCGCCGT
GAGCGGACAATTTAATCTGCTCCCATTCCCGGAGGCGGTGGATCCACCCG
CGCCGGTGAGTAAAGAGAGGGCCCAAGAGATTTTGAACGATCCGCGAGTG
AAGGCACAGCAGGAAAGGGACCGGGCTTTGGTGGCGGAGAAGGGAATGAA
GAAGGAGGAGGGGGGAGGGGGAAGGGTGGAGGAGGGAGAGTCACCTGCTG
TGTCGGTGGGTGCCGCGAAATAA back to topCoding sequence (CDS) from alignment at chr11:958777..961399+ >NO11G03060.1 ID=NO11G03060.1|Name=NO11G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=2031bp|location=Sequence derived from alignment at chr11:958777..961399+ (Nannochloropsis oceanica) ATGCAATCGTCATCCAAAAGTCTGCGCCGCAGCGGATTGCTCCTTCTCTT TCCCTGCTTGTTCTGGGGCGTTGTCGCTTTCCTCCCGGCCCCGGTTTTAC CCACCCGGGACCCCTCCTCCTCGTCCTCGTGCCTGCACGCGGAGAACAAC AACAATAAAGAGCCGAACCCACTGAGCAAACTCTTTACTCCGCCCGCGAC GACCAACCCATTTGCGTCCTTCGGACAGCAAGTCACGTCGTTCTTCGAGA AGCTCATGAGCGGTGGCGGGTTGCCTCCTGCTTCCTCTAAAGCCCTTCCC CCCCCGACACCCAAACCCCGCCGTCGCACCGGTGGGCCCGTTTCGGTTGT CTTTGGTGCCACTGGTCGGGCGGGGCGCGAGATCGTGCAAGCCTTGTTGA AAGAGGGCCATGACGTCATTGCCGCGGTGAGGAATGAGTCGAAACTGAAC GATGTCTTTGGCTCCTACGCCCTGACGGGCACGACGCCCGCGGCCTCGGG GCAAGGACTGTTAGATTATGTGACGGGTGTGGACGTGACAAATCCAGCGA CTTTAATGGAAGGAGACGTACCGGACGTTTTAAAAGAAGCGGCACATGTG GTCGTGGCCTTGGGACCCGTTGGGGGACTGCAGCCCGGGGGAGGTTTTGG ATTTTTCCCAGGACTGACCAGTGAAGATGTGGACTATAAGGGTGTGGTGA AGGTGGTAGATGCCGTGGCGGCCGCCATGGGTGCAGGGAAGAAGGGGGGG AAGAAGGTTTCGATGGAGGAGGAGGAGGAGAAGAGGCAGACATTGTTTCG GTTTGAAACACCTGAGGACGTAGCCAAGTGGCAGCGGTTGGATGACGTGA TCATGGGCGGCCGTTCTTCCTCCACCCTCCAATTAAACGCCGAAAAGGGC TATGCTACCTACACCGGGAGCTTGGTGGTTGAGGATGGGGGGTTTTGCGG TACCAGGGCCTCGGGGGCAGGAGTCTCGGTGGACCTGTCAGGCTTTGACG GCGTCCGTTTACGTGTCCGGGGGGATGGACGACGTTACAAATTAAACGTC AAAACGACCGATACCCTCGCCTCGGAGAATGTGTACCAAGCCGCGTTTGA CACCATGGACCTGGAGGAGGGGGAGGGCTGGCAGACGATTACTCTACCTT TCCATCGGTTCTTCCCCGTGGTCCGGAATCGGGTTGATTACAGAGGAGCC CCCCTCCAGTCTTCCTCTCAGGTAGCCGTTAGCTTCGGTCTCGTCTATTC CCGGTTTGAATTTAATCGACAAGCGAATCCTTACTATGCCCCCGGGGCGT TTGCGTTGGCCATGCAGGAGCTGTCGCTGTACCGCAGCCAAAGGCCGGCG ATTGTGTTGGTGTCGTCGGCGGGGGCGGAACGCAACGCCAAGGTGGAGAC AGAGGAGGATAGGAAAAAGGAGATTCCAATCGTCATGCTTAATCCTGGCG GCATCCTCAACTGGAAGTATCGCGCCGAAACCTACCTTCGTGCGTCCTCC CTCCCCTATACCATCCTCCGACCCTGCGGCCTGGTTCCCGAGAAGGCATT TGGGGACGAGCCTCCCACCGGTAAGCTGCAAGCAGGGCAAGGCGACGTCA TTACGGGGAGGTTGACGAGGCAGGACCTGGGCTCAGCAGTAGCCGCATCG CTGGCTTCGCCGTTCTCGGTGGGCAAGACGTTGGAAATCAGGAGGGACGA GGCGGCCGATGCGAATTCCAAGGCAGGGGTAGGGAAGAGGGAGAGGACGA CTGACATGACGGCCATTGAGCTCTTCCAACCACTGGTGAAAGACAAAGAC CGCGCCGTGAGCGGACAATTTAATCTGCTCCCATTCCCGGAGGCGGTGGA TCCACCCGCGCCGGTGAGTAAAGAGAGGGCCCAAGAGATTTTGAACGATC CGCGAGTGAAGGCACAGCAGGAAAGGGACCGGGCTTTGGTGGCGGAGAAG GGAATGAAGAAGGAGGAGGGGGGAGGGGGAAGGGTGGAGGAGGGAGAGTC ACCTGCTGTGTCGGTGGGTGCCGCGAAATAA back to top
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