NO11G03050.1, NO11G03050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03050.1
Unique NameNO11G03050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length732
Alignment locationchr11:957022..958000 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:957022..958000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03050.1 vs.
Match: ACP49049.1 (Ankyrin [Sulfolobus islandicus Y.N.15.51])

HSP 1 Score: 100.1 bits (248), Expect = 9.800e-18
Identity = 68/167 (40.72%), Postives = 91/167 (54.49%), Query Frame = 0 
Query:   30 PLMLAVYHGSLSDICFLLRHGDYDPAAAHNAYGESLLHLAAASPSPNVSTVLKEFMEGGAMTNVNCKDNARRTPLHVTVAATGPAGVNTPTVVNALVSRGADVDAEDEEGQTPLHVPVSAGRLQVTRLLLSYKAKVGGKDKGGRTPLALAVSMGDVNLVRMLLAHGA 197
            PL +A + G +  +  LL  G  DP A  N  G++ LH+AA     +V  VL   +E GA  + N KDN  +TPLH+       A      VV  L+ RGAD +A+D  GQTPLH+    G + V R+LL   A    KD  G+TPL +A   G V++VR+LL HGA
Sbjct:  174 PLHMAAHKGDVDVVRVLLERGA-DPNAKDNN-GQTPLHMAAQEGDVDVVRVL---LERGA--DPNAKDNNGQTPLHMA------AHKGDVDVVRVLLERGADPNAKDNNGQTPLHMAAHKGHVDVVRVLLERGADPNAKDNNGQTPLHMAAHKGHVDVVRVLLEHGA 327
The following BLAST results are available for this feature:
BLAST of NO11G03050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ACP49049.19.800e-1840.72Ankyrin [Sulfolobus islandicus Y.N.15.51][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03050NO11G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03050.1NO11G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03050.1.cds1NO11G03050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03050.1.cds2NO11G03050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03050.1.cds3NO11G03050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03050.1 ID=NO11G03050.1|Name=NO11G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
ATGTCTTTTTTGGGGAGGGCTACAGACACCGCCCCTCTCCTCAAATTCCA
AGACACGGGCTTCTCCTCCCCCTCGGCTGACGCCGGCCCATTGATGCTCG
CCGTCTATCATGGCTCCCTTTCCGATATCTGCTTTCTTCTTCGACACGGC
GATTATGACCCGGCCGCTGCGCATAATGCCTACGGGGAATCTCTCCTTCA
CCTGGCGGCCGCTTCCCCCTCCCCCAACGTCTCCACTGTCCTTAAAGAGT
TTATGGAGGGAGGAGCGATGACGAATGTTAATTGCAAGGACAACGCGCGC
CGAACTCCTTTGCATGTGACAGTAGCGGCCACGGGCCCGGCGGGAGTGAA
TACGCCGACGGTCGTTAATGCATTGGTTTCGAGGGGCGCTGATGTAGATG
CAGAGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGA
CGCCTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGG
CAAGGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAG
ACGTGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGA
GAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAG
GAGGAGGGAAATTGAGGAGGTACTTCGGGAGCATATCTGGAAGCAAGAGG
AAATGCATCAAAAAGAGGAGGCCTTAGAATAG
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protein sequence of NO11G03050.1

>NO11G03050.1-protein ID=NO11G03050.1-protein|Name=NO11G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MSFLGRATDTAPLLKFQDTGFSSPSADAGPLMLAVYHGSLSDICFLLRHG
DYDPAAAHNAYGESLLHLAAASPSPNVSTVLKEFMEGGAMTNVNCKDNAR
RTPLHVTVAATGPAGVNTPTVVNALVSRGADVDAEDEEGQTPLHVPVSAG
RLQVTRLLLSYKAKVGGKDKGGRTPLALAVSMGDVNLVRMLLAHGARVEG
EELKEGGRGEGGEEEGRRREIEEVLREHIWKQEEMHQKEEALE*
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mRNA from alignment at chr11:957022..958000+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03050.1 ID=NO11G03050.1|Name=NO11G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=979bp|location=Sequence derived from alignment at chr11:957022..958000+ (Nannochloropsis oceanica)
ATGTCTTTTTTGGGGAGGGTAAGGACAGAAAAGTAGAAATGGGTAGTATC
TTAAGCTTGCTGGACTCTACGAAAACAGATCGTATATATTTGACTTCCTC
TCCTCTTTAACCCCTCCTCGCTTTTTTCTTTCACCAGGCTACAGACACCG
CCCCTCTCCTCAAATTCCAAGACACGGGCTTCTCCTCCCCCTCGGCTGAC
GCCGGCCCATTGATGCTCGCCGTCTATCATGGCTCCCTTTCCGATATCTG
CTTTCTTCTTCGACACGGCGATTATGACCCGGCCGCTGCGCATAATGCCT
ACGGGGAATCTCTCCTTCACCTGGCGGCCGCTTCCCCCTCCCCCAACGTC
TCCACTGTCCTTAAAGAGTTTATGGAGGGAGGAGCGATGACGAATGTTAA
TTGCAAGGACAACGCGCGCCGAACTCCTTTGCATGTGACAGTAGCGGCCA
CGGGCCCGGCGGGAGTGAATACGCCGACGGTCGTTAATGCATTGGTTTCG
AGGGGCGCTGATGTAGATGCAGAGGTAAGGAGAGAGAGAGGGAAGGAGGG
TGGATGAAGGGAGAAGATTGCCAGGCATGAAAGAGGAAGGTTGTATACGA
GCTCATCAACTCTCTCACTATGTCGCTCTTAATCTCTCAAACGCACACAA
AGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGACGC
CTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGGCAA
GGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAGACG
TGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGAGAG
GAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAGGAG
GAGGGAAATTGAGGAGGTACTTCGGGAGCATATCTGGAAGCAAGAGGAAA
TGCATCAAAAAGAGGAGGCCTTAGAATAG
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Coding sequence (CDS) from alignment at chr11:957022..958000+

>NO11G03050.1 ID=NO11G03050.1|Name=NO11G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr11:957022..958000+ (Nannochloropsis oceanica)
ATGTCTTTTTTGGGGAGGGCTACAGACACCGCCCCTCTCCTCAAATTCCA
AGACACGGGCTTCTCCTCCCCCTCGGCTGACGCCGGCCCATTGATGCTCG
CCGTCTATCATGGCTCCCTTTCCGATATCTGCTTTCTTCTTCGACACGGC
GATTATGACCCGGCCGCTGCGCATAATGCCTACGGGGAATCTCTCCTTCA
CCTGGCGGCCGCTTCCCCCTCCCCCAACGTCTCCACTGTCCTTAAAGAGT
TTATGGAGGGAGGAGCGATGACGAATGTTAATTGCAAGGACAACGCGCGC
CGAACTCCTTTGCATGTGACAGTAGCGGCCACGGGCCCGGCGGGAGTGAA
TACGCCGACGGTCGTTAATGCATTGGTTTCGAGGGGCGCTGATGTAGATG
CAGAGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGA
CGCCTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGG
CAAGGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAG
ACGTGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGA
GAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAG
GAGGAGGGAAATTGAGGAGGTACTTCGGGAGCATATCTGGAAGCAAGAGG
AAATGCATCAAAAAGAGGAGGCCTTAGAATAG
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Synonyms
Publications