NO11G02580.2, NO11G02580.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02580.2
Unique NameNO11G02580.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1462
Alignment locationchr11:809696..811918 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:809696..811918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02580.2 vs.
Match: EWM24942.1 (signal peptidase complex catalytic subunit sec11c [Nannochloropsis gaditana])

HSP 1 Score: 329.7 bits (844), Expect = 5.300e-87
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHEKEDGKIELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYV 169
            MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVH+KEDGK+ELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYV
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYV 168
The following BLAST results are available for this feature:
BLAST of NO11G02580.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24942.15.300e-8798.81signal peptidase complex catalytic subunit sec11c ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02580NO11G02580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02580.2NO11G02580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02580.2.cds1NO11G02580.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02580.2.cds2NO11G02580.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02580.2.cds3NO11G02580.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02580.2.cds4NO11G02580.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02580.2 ID=NO11G02580.2|Name=NO11G02580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp
TAATAAATGCCACCGCCCTGAATCCTTCGACTGCAGACCTTTTTTTCACG
ATCGGCATCGGCTTGCAAGGCTATGACTAGTTTTCTCCTCTACTCTGGGC
ATGCGAAACACCAGCTAAAGCAAGGCTCCTGCCTAACTCTCCCTCCCTCC
CATCCATCCTGCCCCGCTCCCTCTCTCCCCCGTTTCCACGATTCCACATA
AACACCAGCGCACCGCAAACCGCATTAGCCATGGAAGAAATTGTTCAAGG
ACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTCCTGT
CGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGATTTGG
AAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGGTGCT
CAGTGGGTCTATGGAACCCGCCTTTCAGAGGGGCGACATATTATTTCTAA
ACAATCAAGATGATCCGATCCGCGTAGGAGAGATCGTGGTGTTCAAGATC
AAGGACCGTGACATTCCCATCGTCCATCGTGTACTGGAGGTGCACGAGAA
GGAGGACGGCAAGATCGAGTTGCTGACCAAAGGAGACAACAATCGTGTTG
GCGACCGAGGCCTTTACGCGCCTGGCCAGCTATGGTTGAACCGTGAGGAT
ATCCTGGGACGGGCTGCCGGGACATTGAGGTACCTGGGCATGGTTACCAT
CATTCTCAACGACTATCCCATGCTCAAGTACGTATGAGTCCTTTCTTTCA
GCCGTTGTCTGCCCATGTACCCACCCGTTTTTTAACTGTCGCCTTCTTTC
CCGCGCCCTTCCCTTACCTTAGAAACAAAGAACTCATAAAGTCATGTATC
CCCCCAAACCTCCCTTCCTTCTTTCCTCCCTCCATCCATCTTTCTACCTG
CAGATATGTGCTGGTGGGTATAATGGGGCTCTTCGTACTAACAAATAAAG
AGAGTTGATGAATCTTCCGCCACTGAAACAAGAAGAGCATAGCGGCTCTG
CGGTAGCATGGGAAGACAGACAATGGAGCCCGTAGGCAAGCGCAGACGTG
AGAAACAAAAGGAGCGGAGGGAGTGAAATGAGAAATAGAAGAGTGGATGG
ATGGATGGATGAAGGGATTGATAGACACAATAGGCTAGGGTGAAAGGGGG
CGAGGAGTGGAGAGAGGAATAGCAAAGGAGGTTAAGCAAAGAAACCGACA
GAAATAAAAATGTGCATATCAGACAAACGTCAGTCACATCGAGCCCCAAG
CGAGTGCACGTTTCTATCGTCTTCGTCGCAGTGGGGAGAGGGGAAAGAGA
GGACGATGAAACGACACCCACAAAGAAGCAGTGAAAGAAAGAAAAGAAAT
GATGACGATAACATGCAAATTACAGCCTTTGAAAGCAGTCTGAACGGTCG
ATCATGTTGGGAGACATCCTTCACGTTTTCGCAGTCCCTCGCGTCAGACC
CTTGCACACTGT
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protein sequence of NO11G02580.2

>NO11G02580.2-protein ID=NO11G02580.2-protein|Name=NO11G02580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSE
SPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHR
VLEVHEKEDGKIELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLR
YLGMVTIILNDYPMLKYV*
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mRNA from alignment at chr11:809696..811918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02580.2 ID=NO11G02580.2|Name=NO11G02580.2|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp|location=Sequence derived from alignment at chr11:809696..811918- (Nannochloropsis oceanica)
TAATAAATGCCACCGCCCTGAATCCTTCGACTGCAGACCTTTTTTTCACG
ATCGGCATCGGCTTGCAAGGCTATGACTAGTTTTCTCCTCTACTCTGGGC
ATGCGAAACACCAGCTAAAGCAAGGCTCCTGCCTAACTCTCCCTCCCTCC
CATCCATCCTGCCCCGCTCCCTCTCTCCCCCGTTTCCACGATTCCACATA
AACACCAGCGCACCGCAAACCGCATTAGCCATGGAAGAAATTGTTCAAGG
ACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTCCTGT
CGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGATTTGG
AAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGGTGCT
CAGGTACGTGTACAAAGCGACGCGTCTTTTTACTTTCCCGTCTCTCGCTC
CGCCGCTGTGCGTGTGCTAAGAGTACGTCCTTGATTGGCAGGGGGGACCG
CGCCTGCACGCTAGGTCCTATGGCTCCTGTGTGCTTTTACCAACCTTCCC
GCGAAGGCCAATGAAAAAGGGCCTGCCGGAGATATGACGTTTCAACGATC
AGTCGCATCGCGCTCCCCCCCCTTTCGCGCGATACATTGTCTCGTCCTCC
TCATTCCTTCCTCTCTCCGCCTATGCATCCACAGTGGGTCTATGGAACCC
GCCTTTCAGAGGGGCGACATATTATTTCTAAACAATCAAGATGATCCGAT
CCGCGTAGGAGAGATCGTGGTGTTCAAGATCAAGGACCGTGACATTCCCA
TCGTCCATCGTGTACTGGAGGTGCACGAGAAGTGAGTGGAGCGAGGGAGG
GGAAGAGGGAAGAGGGAAGAAGGGAGGGCTGATAAATTAGCCGCCAGTTG
AGCAATGCAGCTGTTTTTGGATGCCGCTAGGGTCTTGACTCAGATATCAA
CATACACACACACACACATATACACACACACACACACACACACACACACA
TCTATCCATCCAACTCTGCAGGGAGGACGGCAAGATCGAGTTGCTGACCA
AAGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGCCAG
CTATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGGTATGTTTA
TCTGAGTGCGGGGAAGTGTGTGGGTGGAAATATGCAGGCTGCCCTCGCAT
TTCTCCTCGAATGGACTAGCACACATTCCTTTGTTATTTGGGTCTTCTCC
GCAGGCTAATCATTTGATTATCTCACCATGTACAGGACATTGAGGTACCT
GGGCATGGTTACCATCATTCTCAACGACTATCCCATGCTCAAGTACGTAT
GAGTCCTTTCTTTCAGCCGTTGTCTGCCCATGTACCCACCCGTTTTTTAA
CTGTCGCCTTCTTTCCCGCGCCCTTCCCTTACCTTAGAAACAAAGAACTC
ATAAAGTCATGTATCCCCCCAAACCTCCCTTCCTTCTTTCCTCCCTCCAT
CCATCTTTCTACCTGCAGATATGTGCTGGTGGGTATAATGGGGCTCTTCG
TACTAACAAATAAAGAGGTATGCCTCACATAGGGGGGGGGAAGGATAAGG
GGAGGAAAAGGGGAGGGAGAACGAGATTGCGTGCACAATTTATTCAGACT
GTCATCCACACACGCCTCCACTAATTCTCTCCTCATTGGCAAAATTAAAT
TGTACCACTGCAGAGTTGATGAATCTTCCGCCACTGAAACAAGAAGAGCA
TAGCGGCTCTGCGGTAGCATGGGAAGACAGACAATGGAGCCCGTAGGCAA
GCGCAGACGTGAGAAACAAAAGGAGCGGAGGGAGTGAAATGAGAAATAGA
AGAGTGGATGGATGGATGGATGAAGGGATTGATAGACACAATAGGCTAGG
GTGAAAGGGGGCGAGGAGTGGAGAGAGGAATAGCAAAGGAGGTTAAGCAA
AGAAACCGACAGAAATAAAAATGTGCATATCAGACAAACGTCAGTCACAT
CGAGCCCCAAGCGAGTGCACGTTTCTATCGTCTTCGTCGCAGTGGGGAGA
GGGGAAAGAGAGGACGATGAAACGACACCCACAAAGAAGCAGTGAAAGAA
AGAAAAGAAATGATGACGATAACATGCAAATTACAGCCTTTGAAAGCAGT
CTGAACGGTCGATCATGTTGGGAGACATCCTTCACGTTTTCGCAGTCCCT
CGCGTCAGACCCTTGCACACTGT
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Coding sequence (CDS) from alignment at chr11:809696..811918-

>NO11G02580.2 ID=NO11G02580.2|Name=NO11G02580.2|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at chr11:809696..811918- (Nannochloropsis oceanica)
ATGGAAGAAATTGTTCAAGGACAGCTTTCGGAGCTCAAAAAGCTGTGGCG
GTCTCCGCGGATGCTCCTGTCGCAATCTCTGAACCTGGCCATGATCGTTT
TCTCCGCCCTGATGATTTGGAAGGGGCTCATGTTTCTGACCAAGAGCGAG
AGTCCCGTTGTCGTGGTGCTCAGTGGGTCTATGGAACCCGCCTTTCAGAG
GGGCGACATATTATTTCTAAACAATCAAGATGATCCGATCCGCGTAGGAG
AGATCGTGGTGTTCAAGATCAAGGACCGTGACATTCCCATCGTCCATCGT
GTACTGGAGGTGCACGAGAAGGAGGACGGCAAGATCGAGTTGCTGACCAA
AGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGCCAGC
TATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGGACATTGAGG
TACCTGGGCATGGTTACCATCATTCTCAACGACTATCCCATGCTCAAGTA
CGTATGA
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Synonyms
Publications